BAC Information

Click to search

BAC

Clone NameB6Ng01-219D17
Chromosome14 (Build37)
Map Location 15,438,983 - 15,589,864
singlet/doubletdoublet
Overlap geneLOC100042147, Slc4a7
Upstream geneSynpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152
Downstream geneNek10, Lrrc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219D17.bB6Ng01-219D17.g
ACCGA035133GA035134
length1,1851,110
definitionB6Ng01-219D17.b B6Ng01-219D17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,588,665 - 15,589,864)(15,438,983 - 15,440,093)
sequence
gaattcatcaattccagataggaggtcattacgatcttttgctttataag
ccacatcatgaaaaatctataaaaaagaagaaactgagtagagagatttt
acagtggaaagaaaaatctacctatactaaactgcactttaggtacagaa
acactggaatagagcaatggtacatgttaacagcacacactgctcacgag
gacatgccttcagtttccagaactgttaggtggctcacagctatctgtgc
taagttcagttctgaagactatatgacacaatcttatgcactccataggg
cctgcactaacatgtgcacatacctccctccttcctgcacatacacatgt
taaataaataacaaaaatagagtcacacacacacaccaataacataaaat
ctcctcagcagcaggcatccactccacctggcaatacttagctcattatt
agtattaataacgaccaaccaaaaaactgacgtgttaatacaaagaaaaa
acatttcacaaataaacagcaatttgttacaaattaattcataacaataa
tatcaggtcattctatttctgtcactaaagtgttatttatcctgaatgaa
taactatgaacaaagaagttattttgtttaacaaatatttactggttact
tatgatttgttaggtgcagtgctgtatgtgacaaaacaaaacaaaacaaa
acaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacacaatgca
gtctttccaggcagaacagtgagttaaataattgcccagaacagcaagct
tccaagtgaaacaaatgttcataaaacaaaaaacaagcaaacaaaaaaat
taagcaaagtgcagaacagaaagttgacagagaaaaatagacagcccaga
aaatgtctgcctatcagaaagactggtaaccctgataattgaatacagag
gcaggagaatttgtgtgagtttgattatagtctgggctaggcagcaagac
tttgtaaaaacaacacacacaaacagagtgatatttgagggaaatcatgc
cacgggtagaacagtgtagggtgatgttaaaacagttctgctgctgaagt
ggaaccctaggtgatctggctccgtaagaacttcatatcccaatcatcct
acagccactaacgtcagagcactgggttagaacct
gaattcatgctgaaaactcacgagggctgccagaagaaaagcacaaatgt
gcatgagcacagaggacgtttgtccttctgactgtggtcaaagtgatgtg
atcagtcaccttgccaggactcatcaggctaataactaagggctatgcat
ttgcctttgtgccatctgaacttcaataaagacataagcagaaaaactaa
aatgacttgtcatggccataagaaggaaatatatgaccatttcaacttgc
tcttatctccttaatatggtccatattaaaattaatttatcttgtggaca
ttccagctgccactcttaaagctgaaagtacactttctaaaaccaggcac
aaaggtccacagttcacctctgtgctttctggagctgatcttttcttttt
ctatttttttctgggttgtttgtttgtttgttttagatagggactcacga
tgtagccgtggctgtgctacaattcactctgtagaccaggctagccacaa
acaaggagatcccctgaatgcctctgcctcttgagtgctgagactaaagg
agtataccactatacctggctgatcttgacatttttttaaaaagaattat
tttatataatacatacacacacacacatatatatacatacatatacatga
atatatatatgaatacactgtagctgtcttcagaaacaccagaaaagggc
atcggatacccgctacagatggttgtgagccaccatgtggttgctgggaa
ttgaactcagacctctggaagatgagtcagtgctcttaactgctgagtca
tctctccagtccttgatcgtgactaaatcctaaatatggtagctttcttt
cttcagacctaacctgttttcactttgctagtcaatcctactaccaaaag
ccacaggcccaaccttggtttctatttcaataaaaccaatgatttcaaga
ctgctgggcttaaggactgcctcatcaattgaattttgagttactaggca
ctattgttctctttcagtagaagtcagagggcaaactgtagcttcctagg
gcttacagggatcaatccatggccatttgatgtcaccaatttgtcctcaa
gttgaactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_15588665_15589864
seq2: B6Ng01-219D17.b_44_1228 (reverse)

seq1  AGGTTCTTACCAAGTGCTCTGAGTGTAGTGGGCCTGTAGGATGGATTGGG  50
      ||||||| ||| ||||||||||   ||||||  ||||||||| |||||||
seq2  AGGTTCTAACCCAGTGCTCTGACGTTAGTGG--CTGTAGGAT-GATTGGG  47

seq1  ATATGAAGTCTTCACGGGAGCAGACCAACTAGGGGTCCACCTCAGCAGCA  100
      |||||||||  | ||||   |||| || |||||| ||||| |||||||||
seq2  ATATGAAGTTCTTACGGAGCCAGATCACCTAGGGTTCCACTTCAGCAGCA  97

seq1  AGGACTTGTTTTACCATCAACCCTACACTG-TCTACCCGTGGCATGATTT  149
        ||  ||||||| |||| ||||||||||| |||||||||||||||||||
seq2  --GAACTGTTTTAACATC-ACCCTACACTGTTCTACCCGTGGCATGATTT  144

seq1  CCCCTCAAATATCACCTCTGTTTTGTGTGTGTTTGTTTTTACAAAGTCTT  199
       ||||||||||||| ||||| |||||||||| ||||||||||||||||||
seq2  -CCCTCAAATATCA-CTCTG-TTTGTGTGTG-TTGTTTTTACAAAGTCTT  190

seq1  GCTGCCTAGCCCAGACTATAATCAAACTCACACAAATTCTCCTGCCTCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTAGCCCAGACTATAATCAAACTCACACAAATTCTCCTGCCTCTG  240

seq1  TATTCAATTATCAGGGTTACCAGTCTTTTCTGATAGGCAGACATTTTCTT  299
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  TATTCAATTATCAGGGTTACCAGTC-TTTCTGATAGGCAGACATTTTCTG  289

seq1  GGCTGTCTATTTTTCTCTGTCAACTTTCTGTTCTGCACTTTGCTTAATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCTATTTTTCTCTGTCAACTTTCTGTTCTGCACTTTGCTTAATTT  339

seq1  TTTTGTTTGCTTGTTTTTTGTTTTATGAACATTTGTTTCACTTGGAAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGCTTGTTTTTTGTTTTATGAACATTTGTTTCACTTGGAAGCT  389

seq1  TGCTGTTCTGGGCAATTATTTAACTCACTGTTCTGCCTGGAAAGACTGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCTGGGCAATTATTTAACTCACTGTTCTGCCTGGAAAGACTGCA  439

seq1  TTGTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG  499
      |||     ||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-----TGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG  484

seq1  TTTTGTTTTGTTTTGTTTTGTCACATACAGCACTGCACCTAACAAATCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTTTGTCACATACAGCACTGCACCTAACAAATCAT  534

seq1  AAGTAACCAGTAAATATTTGTTAAACAAAATAACTTCTTTGTTCATAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACCAGTAAATATTTGTTAAACAAAATAACTTCTTTGTTCATAGTT  584

seq1  ATTCATTCAGGATAAATAACACTTTAGTGACAGAAATAGAATGACCTGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCAGGATAAATAACACTTTAGTGACAGAAATAGAATGACCTGAT  634

seq1  ATTATTGTTATGAATTAATTTGTAACAAATTGCTGTTTATTTGTGAAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTTATGAATTAATTTGTAACAAATTGCTGTTTATTTGTGAAATG  684

seq1  TTTTTTCTTTGTATTAACACGTCAGTTTTTTGGTTGGTCGTTATTAATAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTGTATTAACACGTCAGTTTTTTGGTTGGTCGTTATTAATAC  734

seq1  TAATAATGAGCTAAGTATTGCCAGGTGGAGTGGATGCCTGCTGCTGAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGAGCTAAGTATTGCCAGGTGGAGTGGATGCCTGCTGCTGAGGA  784

seq1  GATTTTATGTTATTGGTGTGTGTGTGTGACTCTATTTTTGTTATTTATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATGTTATTGGTGTGTGTGTGTGACTCTATTTTTGTTATTTATTT  834

seq1  AACATGTGTATGTGCAGGAAGGAGGGAGGTATGTGCACATGTTAGTGCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGTATGTGCAGGAAGGAGGGAGGTATGTGCACATGTTAGTGCAG  884

seq1  GCCCTATGGAGTGCATAAGATTGTGTCATATAGTCTTCAGAACTGAACTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATGGAGTGCATAAGATTGTGTCATATAGTCTTCAGAACTGAACTT  934

seq1  AGCACAGATAGCTGTGAGCCACCTAACAGTTCTGGAAACTGAAGGCATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGATAGCTGTGAGCCACCTAACAGTTCTGGAAACTGAAGGCATGT  984

seq1  CCTCGTGAGCAGTGTGTGCTGTTAACATGTACCATTGCTCTATTCCAGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTGAGCAGTGTGTGCTGTTAACATGTACCATTGCTCTATTCCAGTG  1034

seq1  TTTCTGTACCTAAAGTGCAGTTTAGTATAGGTAGATTTTTCTTTCCACTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTACCTAAAGTGCAGTTTAGTATAGGTAGATTTTTCTTTCCACTG  1084

seq1  TAAAATCTCTCTACTCAGTTTCTTCTTTTTTATAGATTTTTCATGATGTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTCTCTACTCAGTTTCTTCTTTTTTATAGATTTTTCATGATGTG  1134

seq1  GCTTATAAAGCAAAAGATCGTAATGACCTCCTATCTGGAATTGATGAATT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAAAGCAAAAGATCGTAATGACCTCCTATCTGGAATTGATGAATT  1184

seq1  C  1200
      |
seq2  C  1185

seq1: chr14_15438983_15440093
seq2: B6Ng01-219D17.g_70_1179

seq1  GAATTCATGCTGAAAACTCACGAGGGCTGCCAGAAGAAAAGCACAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTGAAAACTCACGAGGGCTGCCAGAAGAAAAGCACAAATGT  50

seq1  GCATGAGCACAGAGGACGTTTGTCCTTCTGACTGTGGTCAAAGTGATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGCACAGAGGACGTTTGTCCTTCTGACTGTGGTCAAAGTGATGTG  100

seq1  ATCAGTCACCTTGCCAGGACTCATCAGGCTAATAACTAAGGGCTATGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCACCTTGCCAGGACTCATCAGGCTAATAACTAAGGGCTATGCAT  150

seq1  TTGCCTTTGTGCCATCTGAACTTCAATAAAGACATAAGCAGAAAAACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTGTGCCATCTGAACTTCAATAAAGACATAAGCAGAAAAACTAA  200

seq1  AATGACTTGTCATGGCCATAAGAAGGAAATATATGACCATTTCAACTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTGTCATGGCCATAAGAAGGAAATATATGACCATTTCAACTTGC  250

seq1  TCTTATCTCCTTAATATGGTCCATATTAAAATTAATTTATCTTGTGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTCCTTAATATGGTCCATATTAAAATTAATTTATCTTGTGGACA  300

seq1  TTCCAGCTGCCACTCTTAAAGCTGAAAGTACACTTTCTAAAACCAGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTGCCACTCTTAAAGCTGAAAGTACACTTTCTAAAACCAGGCAC  350

seq1  AAAGGTCCACAGTTCACCTCTGTGCTTTCTGGAGCTGATCTTTTCTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCCACAGTTCACCTCTGTGCTTTCTGGAGCTGATCTTTTCTTTTT  400

seq1  CTATTTTTTTCTGGGTTGTTTGTTTGTTTGTTTTAGATAGGGACTCACGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTTTCTGGGTTGTTTGTTTGTTTGTTTTAGATAGGGACTCACGA  450

seq1  TGTAGCCGTGGCTGTGCTACAATTCACTCTGTAGACCAGGCTAGCCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCGTGGCTGTGCTACAATTCACTCTGTAGACCAGGCTAGCCACAA  500

seq1  ACAAGGAGATCCCCTGAATGCCTCTGCCTCTTGAGTGCTGAGACTAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAGATCCCCTGAATGCCTCTGCCTCTTGAGTGCTGAGACTAAAGG  550

seq1  AGTATACCACTATACCTGGCTGATCTTGACATTTTTTTAAAAAGAATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACCACTATACCTGGCTGATCTTGACATTTTTTTAAAAAGAATTAT  600

seq1  TTTATATAATACATACACACACACACATATATATACATACATATACATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAATACATACACACACACACATATATATACATACATATACATGA  650

seq1  ATATATATATGAATACACTGTAGCTGTCTTCAGAAACACCAGAAAAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATGAATACACTGTAGCTGTCTTCAGAAACACCAGAAAAGGGC  700

seq1  ATCGGATACCCGCTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGATACCCGCTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAA  750

seq1  TTGAACTCAGACCTCTGGAAGATGAGTCAGTGCTCTTAACTGCTGAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCAGACCTCTGGAAGATGAGTCAGTGCTCTTAACTGCTGAGTCA  800

seq1  TCTCTCCAGTCCTTGATCGTGACTAAATCCTAAATATGGTAGCTTTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGTCCTTGATCGTGACTAAATCCTAAATATGGTAGCTTTCTTT  850

seq1  CTTCAGACCTAACCTGTTTTCAC-TTGCTAGTCAATCCTACTACCAAAAG  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTCAGACCTAACCTGTTTTCACTTTGCTAGTCAATCCTACTACCAAAAG  900

seq1  CCACAGGCCCAACCTTGGTTTCTATTTCAATAAAACCAATGATTTCAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCCCAACCTTGGTTTCTATTTCAATAAAACCAATGATTTCAAGA  950

seq1  CTGCTGGGCTTAAGGACTGCCTCATCAATTGAATTTTGAGTTACTAAGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  CTGCTGGGCTTAAGGACTGCCTCATCAATTGAATTTTGAGTTACTA--GG  998

seq1  CACTATTGTTCTCTTTCAGGTAGAAGTCAGAGGGCAAACTGTAGCCTTCC  1049
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  CACTATTGTTCTCTTTCA-GTAGAAGTCAGAGGGCAAACTGTAG-CTTCC  1046

seq1  TAGGGC-TACAGGAATCAATCCATTGGCCATTTGATGTCACCATTTTGT-  1097
      |||||| |||||| ||||||||| ||||||||||||||||||| ||||| 
seq2  TAGGGCTTACAGGGATCAATCCA-TGGCCATTTGATGTCACCAATTTGTC  1095

seq1  CTCAAGTTG-ACTGA  1111
      ||||||||| |||||
seq2  CTCAAGTTGAACTGA  1110