BAC Information

Click to search

BAC

Clone NameB6Ng01-220A05
Chromosome14 (Build37)
Map Location 85,163,811 - 85,271,006
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220A05.bB6Ng01-220A05.g
ACCGA035681GA035682
length1,016790
definitionB6Ng01-220A05.b B6Ng01-220A05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,163,811 - 85,164,477)(85,270,216 - 85,271,006)
sequence
gaattctttgttccttctgagccccattttttaatggggttgtttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggatagggaaagatgctttcccaatctgtaggtggtctc
tttgtcttattgacggtgtcttttgccttgcaaaaactttggagtttcat
tacgtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgtacaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtcgctgggttgatgtgaagttctttgat
ccatttagatttgaccttagtacaaggagataatgatggatcgattcgca
ttcttctacatgataacaaccagttgtgcctgcaccatttgtagagaatg
ctgtcttttgcaatttgaaattttcttaaaattcttaaaatttcagctat
taacacactaatttgctttctaggttctgtgcttattttaagccgattat
agaaatcccattaccttgataataataatcgcttattattttgttaccat
aggcacatgcctgtgtgtgtgtatctctgtctctgtatctgactttgtca
ctctatctctgtctctatctcccgtgagcgtctgtgtgtgtgtgtgtgaa
acaaaacatggggtccgttttttgacaaaacaaaacatagcaaaacaaca
agttcatctgaaaactaattaggagtgtttatgtgtgggagaaaccctaa
ttaaaactcagactaatggagtcattgttgagtattgcctcctataagaa
gggtccaggtgatgggaagagtggagggctctgttccatgtataagcctc
acacagcatctgactgtcatgcaagtccattttctgcctgtgttcttttc
ccaccaccttctgactctccagatccagggaattatcccagcacaggtgt
ccacagatgggtcagg
gaattcaaagcaccatttctacttaggggctcatagcgtctttcatgtgc
tatgataatgagactttgattttattcggaatgcagctcatgctagctta
gccactacatttctcataatttatttttgaaacctactattgatataaag
aagtagtgctgaagtaccctaaaatgatcttgaaagcttaaaataatttg
tctgtggttaaataaaaataagagacatatgggataaatgagtcttcaat
acagttttatgtgagtaaaagcatacgattattctcttggatcaggagtc
tgccagaactgagtacattaaagtaaaccagatttgtaagatgtgtcttg
atttatatgtttatttattcttcgcctataagagaccgtaacagatatcc
ccaagcaagactagaagactttctgtagactatgtgtgtccagtgaatta
aaaaaaaaaaaagagcaaaacccgaagcctgaagccttagaaaagaaaca
cagatctccttccttctatacatatgtgtataagtacaaaaatgcaatgc
acatatggaaggataaacacttgtacattaattgctttgagcttgatgat
gttatatgaagggagaacaaaattctgaattatgttttcatatccaagac
tcatttcaaaacatctaagatcagtaagtttttttttcctgtcttcctca
tgtgcatgtgtatgagcatgcttatataggtcaaaagtcaatattgggtg
tgactctggaagacctgactatcatatatatatatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85163811_85164477
seq2: B6Ng01-220A05.b_73_739

seq1  TAATGGGGTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGGTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATAT  50

seq1  ATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTC  100
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  ATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGGAAAGATGCTTTC  100

seq1  CCAATCTGTTGGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGC  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTGTAGGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGC  150

seq1  AGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACA  200
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAACTTTGGAGTTTCATTACGTCCCATTTGTCAATTCTCGATCTTACA  200

seq1  GCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATC  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCACAAGCCATTGCTGTTCTGTACAGGAATTTTTCCCCTGTGCCCATATC  250

seq1  TTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  TTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCGCTGGGT  300

seq1  TTATGTGAAGTTCTTTGATCCATTTAGATTTGACCTTAGTACAAGGAGAT  350
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGAAGTTCTTTGATCCATTTAGATTTGACCTTAGTACAAGGAGAT  350

seq1  AAGTATGGATCGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCA  400
      ||  ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATGATGGATCGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCT  400

seq1  GCACCATTTGTTGAAAATGCTGTCTTTTAGAATTTAAAATTTTCTTAAAA  450
      ||||||||||| || |||||||||||||  ||||| ||||||||||||||
seq2  GCACCATTTGTAGAGAATGCTGTCTTTTGCAATTTGAAATTTTCTTAAAA  450

seq1  TTCTTAAAATTTCAGCTATTAACACACTAATTTGCTTTCTAGCTTCTGTG  500
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCTTAAAATTTCAGCTATTAACACACTAATTTGCTTTCTAGGTTCTGTG  500

seq1  CTTATTTTAAGCCGATTATAGTAATCCCATTTCCTTGATATTTAGAATCT  550
      ||||||||||||||||||||| ||||||||| |||||||| | | |||| 
seq2  CTTATTTTAAGCCGATTATAGAAATCCCATTACCTTGATAATAATAATCG  550

seq1  CTTATTATTTTGTTACCATGGGCACATGTTTGTGTGTGTGTATCTCTGTC  600
      ||||||||||||||||||| ||||||||  ||||||||||||||||||||
seq2  CTTATTATTTTGTTACCATAGGCACATGCCTGTGTGTGTGTATCTCTGTC  600

seq1  TCTGTATCTGTCTTTGTCTCTCTATCTCTGTCTCTCTCTCCTGTGTGTGT  650
      |||||||||| ||||||| |||||||||||||||| ||||| ||| | ||
seq2  TCTGTATCTGACTTTGTCACTCTATCTCTGTCTCTATCTCCCGTGAGCGT  650

seq1  CTGTGTGTGTGTGTGTG  667
      |||||||||||||||||
seq2  CTGTGTGTGTGTGTGTG  667

seq1: chr14_85270216_85271006
seq2: B6Ng01-220A05.g_67_856 (reverse)

seq1  CACACATATATATATATGATAGTCAGGTCTTCCAGAGTCACACCCAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATATATATATGATAGTCAGGTCTTCCAGAGTCACACCCAATAT  50

seq1  TGACTTTTGACCTATATATGCATGCTCATACACATGCACATGAGGAAGAC  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGACTTTTGACCTATATAAGCATGCTCATACACATGCACATGAGGAAGAC  100

seq1  AGGAAAAAAAAACTTACTGATTTTAGATGTTTTGAAATGAGTCTTGGATA  150
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGAAAAAAAAACTTACTGATCTTAGATGTTTTGAAATGAGTCTTGGATA  150

seq1  TGAAAACATAATTCAGAATTTTGTTCTCCCTTCATATAACATCATCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACATAATTCAGAATTTTGTTCTCCCTTCATATAACATCATCAAGC  200

seq1  TCAAAGCAATTAATGTACAAGTGTTTATCCTTCCATATGTGCATTGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCAATTAATGTACAAGTGTTTATCCTTCCATATGTGCATTGCATT  250

seq1  TTTGTACTTATACACATATGTATAGAAGGAAGGAGATCTGTGTTTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTGTACTTATACACATATGTATAGAAGGAAGGAGATCTGTGTTTCTTTT  300

seq1  CTAAGGCTTCAGGCTTCGGGTTTTGCTCTTTTTTTTTTTTTAATTCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCTTCAGGCTTCGGGTTTTGCTCTTTTTTTTTTTTTAATTCACTG  350

seq1  GACACACATAGTCTACAGAAAGTCTTCTAGTCTTGCTTGGGGATATCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACATAGTCTACAGAAAGTCTTCTAGTCTTGCTTGGGGATATCTGT  400

seq1  TACTGTCTCTTCTAGGAGAAGAATAAATAAACATATAAATCAAGACACAT  450
      ||| ||||||| |||| |||||||||||||||||||||||||||||||||
seq2  TACGGTCTCTTATAGGCGAAGAATAAATAAACATATAAATCAAGACACAT  450

seq1  CTTACAAATCTGGTTTACTTTAATGTACTCAGTTCTGGCAGACTCCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAATCTGGTTTACTTTAATGTACTCAGTTCTGGCAGACTCCTGAT  500

seq1  CCAAGAGAATAATCCTATGCTTTTACTCACATAAAACTGTATTGAAGACT  550
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCAAGAGAATAATCGTATGCTTTTACTCACATAAAACTGTATTGAAGACT  550

seq1  CATTTATCCCATATGTCTCTTATTTTTATTTAACCACAGACAAATTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATCCCATATGTCTCTTATTTTTATTTAACCACAGACAAATTATTT  600

seq1  TAAGCTTTCAAGATCATTTTAGGGTACTACAGCACTACTTCTTTATATCA  650
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAGCTTTCAAGATCATTTTAGGGTACTTCAGCACTACTTCTTTATATCA  650

seq1  ATAGTAGGTTTCAAAAATAAATTATGAGAAATGTAGTGGCTAAGCTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGGTTTCAAAAATAAATTATGAGAAATGTAGTGGCTAAGCTAGCA  700

seq1  TGAGCTGCATACTGAATAAAATCAAAGTCTCATTATCATAGCACATGAAA  750
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCATTCCGAATAAAATCAAAGTCTCATTATCATAGCACATGAAA  750

seq1  GACGCTATGAGCCCCTAAGTAGAAATGGTGCTTTTGAATTC  791
      ||||||||||||||||||||||||||||||| |||||||||
seq2  GACGCTATGAGCCCCTAAGTAGAAATGGTGC-TTTGAATTC  790