BAC Information

Click to search

BAC

Clone NameB6Ng01-220D19
Chromosome14 (Build37)
Map Location 110,137,279 - 110,263,137
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk1, LOC640892
Downstream geneSlitrk6, EG668772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220D19.bB6Ng01-220D19.g
ACCGA035849GA035850
length2581,081
definitionB6Ng01-220D19.b B6Ng01-220D19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,262,880 - 110,263,137)(110,137,279 - 110,138,350)
sequence
tttcttcccaaaatacatagacttctttgccaattccaagtttttttatt
tattaacatattaatatttgatactttctatagaagcttaaccatattga
aaataagatagtggtagtattcttatagaaattggaattttagtagttgg
ccttttcattgtcagtactaaagaagaagttaaacaattttttaaagttg
ttttgttttgtatcatgttatatatatatgtgtgtgtgtgtgtgtgtgtg
tgtgtgtg

gaattcaaggttgaaggagagagttcatcatggtaaactaaagtaaagat
tgctgcaaaggagatagaaaatggttggggaaatgagttacaaagagatt
actaaggaggcagagaagcattaagagtactctgaggcataggagtttaa
agaaaaaatagagaggagacaatgacatgattatattttaattatataaa
aaattaatgccttttattctgacatgtttagaaatataacaatggagctt
ggggaaccctctgcaaaagggtgagcaaagattgtaggcatcagaggtga
ttgaggacatgaggataatactacccctgagccaactaagcagggatcaa
atgggcgtacaggttccaggaagcaagcataggccatgaaaggaccggct
ttaagtctcttgggtatatgttatagctgttagcttagtatttctgtggg
actcctgaaaataggaatgagtgtgtttctgatgcttgcttaatcgtggg
actcctgtcctgctgttgggtcaccttgcccagaataaacagaagggatt
tggttttgcctagttatatcttgttggcctgctattttctaaagggagac
agagaggcagtggatctgggagagaaaggaggttgtcggagaacctggga
ggaggttggggaggggaaactgttgtcaggatgtaatatataagagaaaa
atacactttaaatgataaaaaagaaatgtaataatgggggagttgagaag
aaaccttggtgggaatgagtcgttgaaatgactgtacaatatatgtaaag
tttggcttcagattgtttcataaagtagttattttctttctcactgatcc
atagtacaaaatgataaaattgaattgagtgaatgcaaattaacatgtat
aactcaagtgcataataaacatgatcaggaggaatacccttaatagatcc
ttcacctgcatttttcaaataaaataataggttacatgtctattttataa
agtaattattaaatacctaccttaattttcctaatatcaatcattgataa
gtagaataaaaaggtttcctgtcttttatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_110262880_110263137
seq2: B6Ng01-220D19.b_49_306 (reverse)

seq1  CACACACACACACACACACACACACACACATATATATATAACATGATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACATATATATATAACATGATACA  50

seq1  AAACAAAACAACTTTAAAAAATTGTTTAACTTCTTCTTTAGTACTGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAACTTTAAAAAATTGTTTAACTTCTTCTTTAGTACTGACAA  100

seq1  TGAAAAGGCCAACTACTAAAATTCCAATTTCTATAAGAATACTACCACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGCCAACTACTAAAATTCCAATTTCTATAAGAATACTACCACTA  150

seq1  TCTTATTTTCAATATGGTTAAGCTTCTATAGAAAGTATCAAATATTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTTCAATATGGTTAAGCTTCTATAGAAAGTATCAAATATTAATA  200

seq1  TGTTAATAAATAAAAAAACTTGGAATTGGCAAAGAAGTCTATGTATTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATAAATAAAAAAACTTGGAATTGGCAAAGAAGTCTATGTATTTTG  250

seq1  GGAAGAAA  258
      ||||||||
seq2  GGAAGAAA  258


seq1: chr14_110137279_110138350
seq2: B6Ng01-220D19.g_62_1142

seq1  GAATTCAAGGTTGAAGGAGAGAGTTCATCATGGTAAACTAAAGTAAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTTGAAGGAGAGAGTTCATCATGGTAAACTAAAGTAAAGAT  50

seq1  TGCTGCAAAGGAGATAGAAAATGGTTGGGGAAATGAGTTACAAAGAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAAAGGAGATAGAAAATGGTTGGGGAAATGAGTTACAAAGAGATT  100

seq1  ACTAAGGAGGCAGAGAAGCATTAAGAGTACTCTGAGGCATAGGAGTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGAGGCAGAGAAGCATTAAGAGTACTCTGAGGCATAGGAGTTTAA  150

seq1  AGAAAAAATAGAGAGGAGACAATGACATGATTATATTTTAATTATATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATAGAGAGGAGACAATGACATGATTATATTTTAATTATATAAA  200

seq1  AAATTAATGCCTTTTATTCTGACATGTTTAGAAATATAACAATGGAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATGCCTTTTATTCTGACATGTTTAGAAATATAACAATGGAGCTT  250

seq1  GGGGAACCCTCTGCAAAAGGGTGAGCAAAGATTGTAGGCATCAGAGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACCCTCTGCAAAAGGGTGAGCAAAGATTGTAGGCATCAGAGGTGA  300

seq1  TTGAGGACATGAGGATAATACTACCCCTGAGCCAACTAAGCAGGGATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGACATGAGGATAATACTACCCCTGAGCCAACTAAGCAGGGATCAA  350

seq1  ATGGGCGTACAGGTTCCAGGAAGCAAGCATAGGCCATGAAAGGACCGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCGTACAGGTTCCAGGAAGCAAGCATAGGCCATGAAAGGACCGGCT  400

seq1  TTAAGTCTCTTGGGTATATGTTATAGCTGTTAGCTTAGTATTTCTGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTCTTGGGTATATGTTATAGCTGTTAGCTTAGTATTTCTGTGGG  450

seq1  ACTCCTGAAAATAGGAATGAGTGTGTTTCTGATGCTTGCTTAATCGTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGAAAATAGGAATGAGTGTGTTTCTGATGCTTGCTTAATCGTGGG  500

seq1  ACTCCTGTCCTGCTGTTGGGTCACCTTGCCCAGAATAAACAGAAGGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTCCTGCTGTTGGGTCACCTTGCCCAGAATAAACAGAAGGGATT  550

seq1  TGGTTTTGCCTAGTTATATCTTGTTGGCCTGCTATTTTCTAAAGGGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGCCTAGTTATATCTTGTTGGCCTGCTATTTTCTAAAGGGAGAC  600

seq1  AGAGAGGCAGTGGATCTGGGAGAGAAAGGAGGTTGTCGGAGAACCTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCAGTGGATCTGGGAGAGAAAGGAGGTTGTCGGAGAACCTGGGA  650

seq1  GGAGGTTGGGGAGGGGAAACTGTTGTCAGGATGTAATATATAAGAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTGGGGAGGGGAAACTGTTGTCAGGATGTAATATATAAGAGAAAA  700

seq1  ATACACTTTAAATGATAAAAAAGAAATGTAATAAT-GGGGAGTTGAGAAG  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATACACTTTAAATGATAAAAAAGAAATGTAATAATGGGGGAGTTGAGAAG  750

seq1  AAACCTTGGTGGGAATGAGTCGTTGAAATGACTGTACAATATATGTAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTGGTGGGAATGAGTCGTTGAAATGACTGTACAATATATGTAAAG  800

seq1  TTTGGCTTCAGATTGTTTCATAAAGTAGTTATTTTCTTTCTCACTGATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTCAGATTGTTTCATAAAGTAGTTATTTTCTTTCTCACTGATCC  850

seq1  ATAGTACAAAATGATAAAATTGAATTGAGTGAATGCAAAATTAACATGTA  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATAGTACAAAATGATAAAATTGAATTGAGTGAATGC-AAATTAACATGTA  899

seq1  TAACTCAAGTGCAT-ATAAACATGAACA-GAGGAATA-CCTTAATAAGAT  946
      |||||||||||||| |||||||||| || |||||||| ||||||| ||||
seq2  TAACTCAAGTGCATAATAAACATGATCAGGAGGAATACCCTTAAT-AGAT  948

seq1  CTTTCA-CTGCA-TTTTCAAATAAAATAATTAGTTACATGTCTA-TTTAT  993
      | |||| ||||| |||||||||||||||||  |||||||||||| |||||
seq2  CCTTCACCTGCATTTTTCAAATAAAATAATAGGTTACATGTCTATTTTAT  998

seq1  AAAGTAATTATTAATTACCTACCTTATATTTCTAAATATTATTCATTGAT  1043
      |||||||||||||| |||||||||||  ||||  ||||| | ||||||||
seq2  AAAGTAATTATTAAATACCTACCTTAATTTTCCTAATATCAATCATTGAT  1048

seq1  AAGTAGA--TAAAAGGTTT-CTG-CTTTTATAC  1072
      |||||||   ||||||||| ||| |||||||||
seq2  AAGTAGAATAAAAAGGTTTCCTGTCTTTTATAC  1081


| Home | SequenceCutter | Blast | Download |