BAC Information

Click to search

BAC

Clone NameB6Ng01-220L21
Chromosome14 (Build37)
Map Location 114,069,299 - 114,070,339
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043509, Tpm3-rs7, LOC100043510
Downstream geneLOC382947, LOC668791, LOC100043821, LOC100043521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220L21.bB6Ng01-220L21.g
ACCGA036224GA036225
length1,2361,038
definitionB6Ng01-220L21.b B6Ng01-220L21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttggtttctccatctatggtgattgagagtttggctgggtata
gtagcctgggctggaatttgtgttctcttagtgtctgtataacatctgtc
caggctcttctggctttcatagtctctggtgaaaaatctggtgtaattcg
gataggcttgcctttatatgttacttgacctttttcccttactgctttta
gtattctatctttatttagtgcatttgttgttctgattattatgtgtcgg
gaggaatttcttttctggtccagtctatttggagttctataggcttcttg
tatgttcatgggtatctctttctttagatttgggaagttttcttcaataa
tcttgttgaagatgtttgctggtcctttgagttgaaaatctacattctca
tccactcctattatccgtaggttcggtcttctcattgtgtcctggatttc
ctggatgttttgagttaggatctttttgcattttccattttctttgattg
ttgtgccgatgttctctatggaatcttctgcacctgagattctctcttcc
atttcttgtattctgttgctgatgctggcatctctggttccagatttctt
tcctagtgtttctatctccactgttgcctcactttgggttttctttattg
tgtctacttccctctttaggtcttgtatggttttattcaattccatcacc
ggtttggttgtgttttcctgcaattctttaagggatttttgtgtttcctc
tttaatgtcttctacctgcttggttatgttttcctgtaattctttaaggg
atttttgtgtttcctctttaatatcttctacttgtttagcagtgttctcc
tgtatttctttaagtgagttatttaagtccttcttgatgtcctctaccat
catcatgagatatgcttttaaatccagatctagcttttcaagtgtgttgg
ggtgccctggactgggcgaagtgggagtgctgggttctgatgatggtgag
tagtcctggatttcttgttagtaggattcttacgtttaccctttccacaa
ttctgggtaattctctgtagtttagttgtatagatggtctctggtgtaag
aattgttcctctatgattttgttacactatatcagacgaaacataggaga
actatgactctctaccttggagctcaatgtccagaacatgtctctcgtcc
agtgactgacgctactcctttcattttccactggta

gaattccaattgagtaatgcttttatatgattggcatgtttgaaaactta
tgagctattttcttgctggtgattgatgtgagaagacccacatcactatg
tgcagtacttcccctgaggccttggtcttggcttttgtttcttcatgatc
tctgcttcagatcctgcctccaacctagctttgagttcctgccctgactt
tcttcagtgatggagatgttttgtgacctgaaacttgtaagctaagatac
atttgtttttgttttttttttccctgggttgattttggccactgtgtttg
atttcagaactaggaaccctaagagaggaagcccattcaagaataggatt
tgtgctggaatgaaaaacagctttaatttttcaaattttccatttaataa
acaagtaatggagagtattggtaatatattatctgtttacctaggacgta
caatgtaaaaacaataaatacaataaacagcaaatataatgtcttcttgc
tcatcctttcttttaatgctatcatgttgcacattcatttggaaaaatat
ttttatgtttgtaaaatacgtgtattataacaaataaatttttatgtcac
ataagcatctaatgttagttaacataaataaatctcattatttctcatag
ttttttttttattttaatgacataatcattgcacatcttagtctatttga
ccaagatttctttgactatcaggaatgttttgtggctttgcatgtattca
aatattgtttaactactagatatttagatatgctataaactagtttaaaa
ttaaaattactctttgtaaagtctgtatatagaactcctttggtattgtt
ttaattaaaaaataatcataaactatcacacaaaatctatgctataaggt
atagtattggaggagacaatgacaataaacattacagagtgttacagggt
tcagttatgatgccatccctcccaggtggtccctacattcctgctctttt
tctcagctggtgctttctgtcccatcaggtacccttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_114069299_114070339
seq2: B6Ng01-220L21.g_65_1102 (reverse)

seq1  AGAAGGGGTACCTGATGGGGACAGAAAGGCACAGCTGAGAAAAAGAGCAG  50
      |||| ||||||||||| |||||||||||   |||||||||||||||||||
seq2  AGAA-GGGTACCTGAT-GGGACAGAAAGCACCAGCTGAGAAAAAGAGCAG  48

seq1  GAATGTAAGGGACCACCTGGGAGGGATGGCATCATAACTGAA-CCTGTAA  99
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  GAATGT-AGGGACCACCTGGGAGGGATGGCATCATAACTGAACCCTGTAA  97

seq1  CACTCTGTAATGTTTTATTGTCATTGTCTCCT-CAATACTATACCTTTAT  148
      |||||||||||| ||||||||||||||||||| |||||||||||| ||||
seq2  CACTCTGTAATG-TTTATTGTCATTGTCTCCTCCAATACTATACC-TTAT  145

seq1  AGCATAGATTTTGTGTGATAGTTTATGATTATTTTTTAATTAAAACAATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGATTTTGTGTGATAGTTTATGATTATTTTTTAATTAAAACAATA  195

seq1  CCAAAGGAGTTCTATATACAGACTTTACAAAGAGTAATTTTAATTTTAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGAGTTCTATATACAGACTTTACAAAGAGTAATTTTAATTTTAAA  245

seq1  CTAGTTTATAGCATATCTAAATATCTAGTAGTTAAACAATATTTGAATAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTATAGCATATCTAAATATCTAGTAGTTAAACAATATTTGAATAC  295

seq1  ATGCAAAGCCACAAAACATTCCTGATAGTCAAAGAAATCTTGGTCAAATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGCCACAAAACATTCCTGATAGTCAAAGAAATCTTGGTCAAATA  345

seq1  GACTAAGATGTGCAATGATTATGTCATTAAAATAAAAAAAAAACTATGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGATGTGCAATGATTATGTCATTAAAATAAAAAAAAAACTATGAG  395

seq1  AAATAATGAGATTTATTTATGTTAACTAACATTAGATGCTTATGTGACAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGAGATTTATTTATGTTAACTAACATTAGATGCTTATGTGACAT  445

seq1  AAAAATTTATTTGTTATAATACACGTATTTTACAAACATAAAAATATTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTATTTGTTATAATACACGTATTTTACAAACATAAAAATATTTT  495

seq1  TCCAAATGAATGTGCAACATGATAGCATTAAAAGAAAGGATGAGCAAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGAATGTGCAACATGATAGCATTAAAAGAAAGGATGAGCAAGAA  545

seq1  GACATTATATTTGCTGTTTATTGTATTTATTGTTTTTACATTGTACGTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATATTTGCTGTTTATTGTATTTATTGTTTTTACATTGTACGTCC  595

seq1  TAGGTAAACAGATAATATATTACCAATACTCTCCATTACTTGTTTATTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAACAGATAATATATTACCAATACTCTCCATTACTTGTTTATTAA  645

seq1  ATGGAAAATTTGAAAAATTAAAGCTGTTTTTCATTCCAGCACAAATCCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAATTTGAAAAATTAAAGCTGTTTTTCATTCCAGCACAAATCCTA  695

seq1  TTCTTGAATGGGCTTCCTCTCTTAGGGTTCCTAGTTCTGAAATCAAACAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAATGGGCTTCCTCTCTTAGGGTTCCTAGTTCTGAAATCAAACAC  745

seq1  AGTGGCCAAAATCAACCCAGGGAAAAAAAAAACAAAAACAAATGTATCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCAAAATCAACCCAGGGAAAAAAAAAACAAAAACAAATGTATCTT  795

seq1  AGCTTACAAGTTTCAGGTCACAAAACATCTCCATCACTGAAGAAAGTCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACAAGTTTCAGGTCACAAAACATCTCCATCACTGAAGAAAGTCAG  845

seq1  GGCAGGAACTCAAAGCTAGGTTGGAGGCAGGATCTGAAGCAGAGATCATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAACTCAAAGCTAGGTTGGAGGCAGGATCTGAAGCAGAGATCATG  895

seq1  AAGAAACAAAAGCCAAGACCAAGGCCTCAGGGGAAGTACTGCACATAGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAAAAGCCAAGACCAAGGCCTCAGGGGAAGTACTGCACATAGTG  945

seq1  ATGTGGGTCTTCTCACATCAATCACCAGCAAGAAAATAGCTCATAAGTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTCTTCTCACATCAATCACCAGCAAGAAAATAGCTCATAAGTTT  995

seq1  TCAAACATGCCAATCATATAAAAGCATTACTCAATTGGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATGCCAATCATATAAAAGCATTACTCAATTGGAATTC  1038


| Home | SequenceCutter | Blast | Download |