BAC Information

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BAC

Clone NameB6Ng01-221E18
Chromosome14 (Build37)
Map Location 118,185,840 - 118,186,955
singlet/doubletsinglet
Overlap geneGpc6
Upstream genenone
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221E18.bB6Ng01-221E18.g
ACCGA036627GA036628
length1,2001,125
definitionB6Ng01-221E18.b B6Ng01-221E18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
atagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaagtatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaacacctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaggtgaaagatctgtataataaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatatacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacgtaaaacc
taggattgcaaaaagtcttctcaacgataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatgggtcacttgatcttcgacaaggga
gctaaaaccatccagtgggaagaaagacagcattttcaacaattgggtgc
tggcacaactgggtgttatcatgtagaagaatgtgaatcgatccatactt
atctccttgtactaggtcaatctagtggatcaggacttcacataaaacca
gagacactgaaactatagaggagaaagtggggaaggccttggaggatatt
ggcacaggggaaaatttcctgaacagaacagcaatggctgtaccgagatc
cgaatggacatggaacctaatgaaacctcaaagttctctcgtgcaatgca

gaattcccagaaggaaaaacggagacagtgggagagaggaaatttaaagg
taaaagctgtgacttttctggaagtacagagaagtagctaagtgtggtgt
tcatctacctaggcttgataaactcaataatttagaattcagagtcaaca
ttccaatgctgtgtcggaggactgtcagcacgaggtttaaaatgaatagg
tgttgtctctcaagtgagaagcagtgtaataaatgtactcccttaatatt
tattatggtggatctgaggacaaaggagattaaatatgacacatcatttg
tttttttacaaactctggaaaacaacaggaagtaataatttgagataatg
taattgtgcaaagcatctcggtaacactataaatgcattctcccagagtc
tattcactttagctgggtgcaggctgctcctcgctattttcttttacttt
agaataaacaggacctgttaaaacctggatctgtttagaaacaaaacaag
acaaaaatgaattccagcaccataaacaggggccccactaatgagccctg
catcgataaatgtgcacaatcagtgtaatctgtagagttaggggcatttg
aaagtacaagagctcacaaagaatgacccgaggctctatgatcaaggaag
ctagtgattttcctaatgctcgcttcccgggaggtgctgaaagtgggatt
attctctaggtctcatagagagttctcctttgatttcctatccactaaga
aacgaagcttgttctcacagccttcatctggggaccttctttgcaggctc
cccctcttgccttcggggctctattagcttccgctttaccccgcctttga
gtcagcaaccgcccgccccctgccaccacaccagccttcccgctgggtgg
agtccaggttctttccagccttctcttaaacagtggcacctttctctgac
tcccttaaagacaggtacatctttgtattactgatggtattgtcactgtg
atttcccttagctctcaatggagccaaacttgtgaaaggacttgtgttgg
aacttatatggcacctgattgaaaatttctagtcagccagttttgaccaa
aatatacaattccaatgggaggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118185840_118186955
seq2: B6Ng01-221E18.g_65_1189 (reverse)

seq1  GATCCT-CCATTGG-ATTGTATATTTT-GTCAAAACT-GCTGACTTAAAA  46
      |||||| ||||||| |||||||||||| ||||||||| |||||| || ||
seq2  GATCCTCCCATTGGAATTGTATATTTTGGTCAAAACTGGCTGAC-TAGAA  49

seq1  ATTTTCAATCA-GTGCCATAT-AGTTCCACACA-AAGTCCTTTCAC-AGT  92
      ||||||||||| ||||||||| ||||||| ||| |||||||||||| |||
seq2  ATTTTCAATCAGGTGCCATATAAGTTCCA-ACACAAGTCCTTTCACAAGT  98

seq1  TTGGCT-CATTGAGAGCTAAGGGAAATCACAGTGACATTACCATCAGTAA  141
      |||||| |||||||||||||||||||||||||||||| |||||||||| |
seq2  TTGGCTCCATTGAGAGCTAAGGGAAATCACAGTGACAATACCATCAGT-A  147

seq1  ATACAAAGATGTACCTGGTCTTAAGGGAGTCAGAGAAAGGTGCCACTGTT  191
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  ATACAAAGATGTACCTGTCTTTAAGGGAGTCAGAGAAAGGTGCCACTGTT  197

seq1  T-AGAGGAGGCTGG-AAGAACCTGGACTCCACCCAGCGGG-AGGCTGGGT  238
      | |||| ||||||| ||||||||||||||||||||||||| ||||| |||
seq2  TAAGAGAAGGCTGGAAAGAACCTGGACTCCACCCAGCGGGAAGGCT-GGT  246

seq1  GTGGTGGCAGGGGGCGGGCGGTTGCTGACTC-AAGGCGGGGTAAAGCGGA  287
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGGTGGCAGGGGGCGGGCGGTTGCTGACTCAAAGGCGGGGTAAAGCGGA  296

seq1  AGCTAATAGAGCCCCGAAGGCAAGAGGGGGAGCCTGCAAAGAAGGTCCCC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATAGAGCCCCGAAGGCAAGAGGGGGAGCCTGCAAAGAAGGTCCCC  346

seq1  AGATGAAGGCTGTGAGAACAAGCTTCGTTTCTTAGTGGATAGGAAATCAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGGCTGTGAGAACAAGCTTCGTTTCTTAGTGGATAGGAAATCAA  396

seq1  AGGAGAACTCTCTATGAGACCTAGAGAATAATCCCACTTTCAGCACCTCC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAACTCTCTATGAGACCTAGAGAATAATCCCACTTTCAGCACCTCC  446

seq1  CGGGAAGCGAGCATTAGGAAAATCACTAGCTTCCTTGATCATAGAGCCTC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAGCGAGCATTAGGAAAATCACTAGCTTCCTTGATCATAGAGCCTC  496

seq1  GGGTCATTCTTTGTGAGCTCTTGTACTTTCAAATGCCCCTAACTCTACAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATTCTTTGTGAGCTCTTGTACTTTCAAATGCCCCTAACTCTACAG  546

seq1  ATTACACTGATTGTGCACATTTATCGATGCAGGGCTCATTAGTGGGGCCC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACTGATTGTGCACATTTATCGATGCAGGGCTCATTAGTGGGGCCC  596

seq1  CTGTTTATGGTGCTGGAATTCATTTTTGTCTTGTTTTGTTTCTAAACAGA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATGGTGCTGGAATTCATTTTTGTCTTGTTTTGTTTCTAAACAGA  646

seq1  TCCAGGTTTTAACAGGTCCTGTTTATTCTAAAGTAAAAGAAAATAGCGAG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTTTAACAGGTCCTGTTTATTCTAAAGTAAAAGAAAATAGCGAG  696

seq1  GAGCAGCCTGCACCCAGCTAAAGTGAATAGACTCTGGGAGAATGCATTTA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCTGCACCCAGCTAAAGTGAATAGACTCTGGGAGAATGCATTTA  746

seq1  TAGTGTTACCGAGATGCTTTGCACAATTACATTATCTCAAATTATTACTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTACCGAGATGCTTTGCACAATTACATTATCTCAAATTATTACTT  796

seq1  CCTGTTGTTTTCCAGAGTTTGTAAAAAAACAAATGATGTGTCATATTTAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGTTTTCCAGAGTTTGTAAAAAAACAAATGATGTGTCATATTTAA  846

seq1  TCTCCTTTGTCCTCAGATCCACCATAATAAATATTAAGGGAGTACATTTA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTGTCCTCAGATCCACCATAATAAATATTAAGGGAGTACATTTA  896

seq1  TTACACTGCTTCTCACTTGAGAGACAACACCTATTCATTTTAAACCTCGT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTGCTTCTCACTTGAGAGACAACACCTATTCATTTTAAACCTCGT  946

seq1  GCTGACAGTCCTCCGACACAGCATTGGAATGTTGACTCTGAATTCTAAAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAGTCCTCCGACACAGCATTGGAATGTTGACTCTGAATTCTAAAT  996

seq1  TATTGAGTTTATCAAGCCTAGGTAGATGAACACCACACTTAGCTACTTCT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGTTTATCAAGCCTAGGTAGATGAACACCACACTTAGCTACTTCT  1046

seq1  CTGTACTTCCAGAAAAGTCACAGCTTTTACCTTTAAATTTCCTCTCTCCC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTCCAGAAAAGTCACAGCTTTTACCTTTAAATTTCCTCTCTCCC  1096

seq1  ACTGTCTCCGTTTTTCCTTCTGGGAATTC  1116
      |||||||||||||||||||||||||||||
seq2  ACTGTCTCCGTTTTTCCTTCTGGGAATTC  1125