BAC Information

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BAC

Clone NameB6Ng01-221I03
Chromosome14 (Build37)
Map Location 5,140,971 - 5,250,461
singlet/doubletdoublet
Overlap gene4930555G01Rik, EG666772, LOC666765
Upstream geneENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374
Downstream geneLOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221I03.bB6Ng01-221I03.g
ACCGA036779GA036780
length855479
definitionB6Ng01-221I03.b B6Ng01-221I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,140,971 - 5,141,825)(5,249,970 - 5,250,461)
sequence
gaattctcaaatattcctataccatgcctgcctggatactgccatgctcc
tgccttgaagataatggactgaacctctgaacctgtaagccagccccaat
taaatgctctccctctgttgccttggtcaaggtgtctcttcatagaaatg
aaaccctaactaagacagtatgtctgactacatacatgtcttattgttgt
tttgagatagggccttacaagataggccagactatagtcaaatttaccat
cctcttgcctcagccttctgagcagtataattaaaatacccattgccagc
ttttaaaatattttcaattaagaaaatacctagacacttttcaaatgttt
caagtaatgcaatgtccattttagtatgcaaatattttagtgtatcatga
aatatttacaaaaagtatttcaaacaaggttaattacttaaactctggcc
ttttgttagcttggatttgagacagagtttgatgtagcccaggctagcct
gggactccctttgtaaatgaggaaagccttgcagcactgatcccctgcct
ctatgccctgagcattagaattccaggtgagtgacactgcaccttgtttc
tatgcagtactgggaactaaatccagagcttcatgcatgctagcaaagca
gtctaccagtgagctgcctccccagcccaaactgttctgcactgttcact
gcctgccaaacaggggaatgaccccggggatcttcaatgggaactaaagt
aagtgggctttgttccaatgataatattcacattgcaagtatttaataac
tatgcagtcattcatggaaagatatttgtgtgtgtgtgtgtgtgtgtgtg
tgtgt
tcatggaggccagaagcatccagtacccctagagctggagttaggaggca
cccagtgtgggtgctccaaagcaaactccctgctttcagactcccaaacc
catctggcagaatgagcaacccaactccaaaaagttgtgtttcctctctc
tctctctctctctctctctctctctctctctctctctctctctctctctc
tctctgtctctctctcacacacacacatacgttcttttttataccaagca
agatagaaagaaaaagagatagtcatatttctctctctctgaaggacgga
aaggagatagcgctcacaccatgaaaagaataatgaagtgtgaccagcga
cctgtgtatctccctgagccagggttataatccatatttgggactaatgt
gactacatatacagtggtgccgatgctctatagttctatctcctctgttc
cctgtgaagtcctaacttcatgagcacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_5140971_5141825
seq2: B6Ng01-221I03.b_46_900

seq1  GAATTCTCAAATATTCCTATACCATGCCTGCCTGGATACTGCCATGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATATTCCTATACCATGCCTGCCTGGATACTGCCATGCTCC  50

seq1  TGCCTTGAAGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGAAGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAAT  100

seq1  TAAATGCTCTCCCTCTGTTGCCTTGGTCAAGGTGTCTCTTCATAGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTCTCCCTCTGTTGCCTTGGTCAAGGTGTCTCTTCATAGAAATG  150

seq1  AAACCCTAACTAAGACAGTATGTCTGACTACATACATGTCTTATTGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTAACTAAGACAGTATGTCTGACTACATACATGTCTTATTGTTGT  200

seq1  TTTGAGATAGGGCCTTACAAGATAGGCCAGACTATAGTCAAATTTACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATAGGGCCTTACAAGATAGGCCAGACTATAGTCAAATTTACCAT  250

seq1  CCTCTTGCCTCAGCCTTCTGAGCAGTATAATTAAAATACCCATTGCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCCTCAGCCTTCTGAGCAGTATAATTAAAATACCCATTGCCAGC  300

seq1  TTTTAAAATATTTTCAATTAAGAAAATACCTAGACACTTTTCAAATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATATTTTCAATTAAGAAAATACCTAGACACTTTTCAAATGTTT  350

seq1  CAAGTAATGCAATGTCCATTTTAGTATGCAAATATTTTAGTGTATCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATGCAATGTCCATTTTAGTATGCAAATATTTTAGTGTATCATGA  400

seq1  AATATTTACAAAAAGTATTTCAAACAAGGTTAATTACTTAAACTCTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTACAAAAAGTATTTCAAACAAGGTTAATTACTTAAACTCTGGCC  450

seq1  TTTTGTTAGCTTGGATTTGAGACAGAGTTTGATGTAGCCCAGGCTAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTAGCTTGGATTTGAGACAGAGTTTGATGTAGCCCAGGCTAGCCT  500

seq1  GGGACTCCCTTTGTAAATGAGGAAAGCCTTGCAGCACTGATCCCCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCCCTTTGTAAATGAGGAAAGCCTTGCAGCACTGATCCCCTGCCT  550

seq1  CTATGCCCTGAGCATTAGAATTCCAGGTGAGTGACACTGCACCTTGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCCTGAGCATTAGAATTCCAGGTGAGTGACACTGCACCTTGTTTC  600

seq1  TATGCAGTACTGGGAACTAAATCCAGAGCTTCATGCATGCTAGCAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGTACTGGGAACTAAATCCAGAGCTTCATGCATGCTAGCAAAGCA  650

seq1  GTCTACCAGTGAGCTGCCTCCCCAGCCCAAACTGTTCTGCACTGTTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCAGTGAGCTGCCTCCCCAGCCCAAACTGTTCTGCACTGTTCACT  700

seq1  GCCTGCCAAACAGGGGAATGACCCCGGGGATCTTCAATGGGAACTAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCAAACAGGGGAATGACCCCGGGGATCTTCAATGGGAACTAAAGT  750

seq1  AAGTGGGCTTTGTTCCAATGATAATATTCACATTGCAAGTATTTAATAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGCTTTGTTCCAATGATAATATTCACATTGCAAGTATTTAATAAC  800

seq1  TATGCAGTCATTCATGGAAAGATATTTGTGTGTGTGTGTGTGTGTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGTCATTCATGGAAAGATATTTGTGTGTGTGTGTGTGTGTGTGTG  850

seq1  TGTGT  855
      |||||
seq2  TGTGT  855

seq1: chr14_5249970_5250461
seq2: B6Ng01-221I03.g_65_549 (reverse)

seq1  AGGTGCTCATGCAAGTTAGGACTTCAACGGGAACTGGGGAGATACGAACA  50
      ||||||||||| ||||||||||||||  |||||| | ||||||| |||| 
seq2  AGGTGCTCATG-AAGTTAGGACTTCACAGGGAACAGAGGAGATA-GAAC-  47

seq1  TTTAGAACATAGAAACAGCTGTATATGTAGTCACATTAATGAAGCAATCT  100
      | |||| ||| |  ||  |||||||||||||||||||| |     ||| |
seq2  TATAGAGCATCGGCACCACTGTATATGTAGTCACATTAGT-CCCAAATAT  96

seq1  GGATTATAACCCTGGCTCTGGGAGATACACAGGTCCCTGGGCAAGCTGCA  150
      |||||||||||||||||| |||||||||||||||| |||| ||  || ||
seq2  GGATTATAACCCTGGCTCAGGGAGATACACAGGTCGCTGGTCACACTTCA  146

seq1  TTCTTCTTTTCTTGTTTTAATGTCTTTTCTTTCTTTCCTTCCTTCCTTCT  200
      || |||||||| || | | |   || |   | |||||| ||||| |    
seq2  TTATTCTTTTCATGGTGTGAGCGCTAT--CTCCTTTCCGTCCTT-CAGAG  193

seq1  TTCTTTCTTTCTTTCTTTCTTTTTTTCTTTCTGTCTTTCTTTCTATAAAA  250
               | |  || ||| ||||||||||| |||| |||  |||||||
seq2  AGAGAGAAATATGACTATCTCTTTTTCTTTCTATCTTGCTTGGTATAAAA  243

seq1  AATAACGTATGTGTGTGTTTGAGACAGAGACAGGGACAGAAAGAGAGAGA  300
      || ||||||||||||||| ||||| |||||||| || ||| |||||||||
seq2  AAGAACGTATGTGTGTGTGTGAGAGAGAGACAGAGAGAGAGAGAGAGAGA  293

seq1  GAGAGAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAACAC  350
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAACAC  343

seq1  AACTTTTTGGAGTTGGGTTGCTCATTCTGCCAGATGGGTTTGGGAGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTGGAGTTGGGTTGCTCATTCTGCCAGATGGGTTTGGGAGTCTG  393

seq1  AAAGCAGGGAGTTTGCTTTGGAGCACCCACACTGGGTGCCTCCTAACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGGAGTTTGCTTTGGAGCACCCACACTGGGTGCCTCCTAACTCC  443

seq1  AGCTCTAGGGGTACTGGATGCTTCTGGCCTCCATGAGAATTC  492
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAGGGGTACTGGATGCTTCTGGCCTCCATGAGAATTC  485