BAC Information

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BAC

Clone NameB6Ng01-221N15
Chromosome14 (Build37)
Map Location 94,991,862 - 94,993,385
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221N15.bB6Ng01-221N15.g
ACCGA037028GA037029
length7581,130
definitionB6Ng01-221N15.b B6Ng01-221N15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ggaattcttttcctcttcgtgagttgccccttctagtcttgacacgagtg
tttgtgtgtagtctcattgtaacttgctatgctgtgctaagctgatatcc
ctgtagtgcctttttctgaaggtaaatggaggtggagtgaatcaggggag
gtgagaggtaggagcagctaggagcagtgggaaggggaagtacagttagg
atgtaatatatgactgaagaaaaccttaaaataaattaataaagaaaaga
aacatgaaactatgcccctccttagaattgggaacaaaacacccatggaa
ggagttacagagacaaagtttggagctgagatgaaaggatggaccatgta
gagactgccatatccagggatccaccccataatcagcatccaaacgctga
caccattgcatacactagcaagattttatcgaaaggacccagatgtagct
gtctcttgtgagactatgccggggcctagcaaacacagaagtggatgctc
acagtcagctaatggatggatcacagggctcccaatggaggagctagaga
aagtagccaaggagctaaagggatctgcaactctataggttggaacaaca
ttacgaactaacaagtactccggagcttctttgactctagctgcatatgt
atcaaaagaatgcctattcggccatccccttgaaagagaggccccatttg
gacacgcattcttttatatgcccccagtacaggggaactccagggcttat
taaggggg

gaattcttttaaataagttccatgaaaaattctctgcaatgaattttaag
tatgccttggccattgctttcgtatttccatgatagattgtgctcttgct
tgatttaatactggcaaaaaatattccctcattcccagtctgaaaatttc
tagtctacatctcttgtggaaaaaaaaatgcacaccttcttttggcctgc
ctgactttacagtaactaataaaatgcctttcttgttaatcagcaaacac
tgttattcaaaccatggtcattattaacaaacgtttaaaataaaatatat
aattctgacactaaatttttgacaggactgattttgaggacgaaaatact
atcattgtctttaaggttaaaaaataaataatataaaaggcttttgttct
attactgctctgacatttaaattgatattatgatatcgtgacaggcaaat
ccaccaactgggtatttgatgctaaatataaagtgcacttttcacatagg
tatgattcatgcttcaaatgacttgtgtgaaatatccattatgaagctgg
gaagagagctcagaatgtaggatccagaacttctcttataggagatcaga
gttcactaggatcccagcacatacatttggtggctcacagtcatgtgatg
actagaactccaagggatctgatatattcttctggcctgctggggtactt
tactcagatgaacaaaaccacactcgaaaatatgtgtatacacataataa
aaaagattttcaaagctatatatttctatgaggagtacagatagcttgtt
ctccctcagagctcttgaattatttctgtagggcttgacatgacatcttt
gtaattgaagatgggcataaaagtaaaggaaataaaaactaaaaaacaca
tgacagaatgctgtagaaaagcttatgtcagcacatggttcaaatttcca
cagattgtctagagaattgcaattgttatttaggaaacaagctgttattc
ttatcagtagagcacattttactgagattttaaagaaaaaaattctgaag
acattctcctgaggcaagcatttaaagcttgatgatatatgatttagtgc
ttgatttttcatgttggtccaattaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94991862_94993385
seq2: B6Ng01-221N15.g_65_1194

seq1  GAATTCTTTTAAATAAGTTCCATGAAAAATTCTCTGCAATGAATTTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAATAAGTTCCATGAAAAATTCTCTGCAATGAATTTTAAG  50

seq1  TATGCCTTGGCCATTGCTTTCGTATTTCCATGATAGATTGTGCTCTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTTGGCCATTGCTTTCGTATTTCCATGATAGATTGTGCTCTTGCT  100

seq1  TGATTTAATACTGGCAAAAAATATTCCCTCATTCCCAGTCTGAAAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAATACTGGCAAAAAATATTCCCTCATTCCCAGTCTGAAAATTTC  150

seq1  TAGTCTACATCTCTTGTGGAAAAAAAAATGCACACCTTCTTTTGGCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTACATCTCTTGTGGAAAAAAAAATGCACACCTTCTTTTGGCCTGC  200

seq1  CTGACTTTACAGTAACTAATAAAATGCCTTTCTTGTTAATCAGCAAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTACAGTAACTAATAAAATGCCTTTCTTGTTAATCAGCAAACAC  250

seq1  TGTTATTCAAACCATGGTCATTATTAACAAACGTTTAAAATAAAATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCAAACCATGGTCATTATTAACAAACGTTTAAAATAAAATATAT  300

seq1  AATTCTGACACTAAATTTTTGACAGGACTGATTTTGAGGACGAAAATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGACACTAAATTTTTGACAGGACTGATTTTGAGGACGAAAATACT  350

seq1  ATCATTGTCTTTAAGGTTAAAAAATAAATAATATAAAAGGCTTTTGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGTCTTTAAGGTTAAAAAATAAATAATATAAAAGGCTTTTGTTCT  400

seq1  ATTACTGCTCTGACATTTAAATTGATATTATGATATCGTGACAGGCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGCTCTGACATTTAAATTGATATTATGATATCGTGACAGGCAAAT  450

seq1  CCACCAACTGGGTATTTGATGCTAAATATAAAGTGCACTTTTCACATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAACTGGGTATTTGATGCTAAATATAAAGTGCACTTTTCACATAGG  500

seq1  TATGATTCATGCTTCAAATGACTTGTGTGAAATATCCATTATGAAGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTCATGCTTCAAATGACTTGTGTGAAATATCCATTATGAAGCTGG  550

seq1  GAAGAGAGCTCAGAATGTAGGATCCAGAACTTCTCTTATAGGAGATCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGCTCAGAATGTAGGATCCAGAACTTCTCTTATAGGAGATCAGA  600

seq1  GTTCACTAGGATCCCAGCACATACATTTGGTGGCTCACAGTCATGTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTAGGATCCCAGCACATACATTTGGTGGCTCACAGTCATGTGATG  650

seq1  ACTAGAACTCCAAGGGATCTGATATATTCTTCTGGCCTGCTGGGGTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAACTCCAAGGGATCTGATATATTCTTCTGGCCTGCTGGGGTACTT  700

seq1  TACTCAGATGAACAAAACCACACTCGAAAATATGTGTATACACATAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGATGAACAAAACCACACTCGAAAATATGTGTATACACATAATAA  750

seq1  AAAAGATTTTCAAAGCTATATATTTCTATGAGGAGTACAGATAGCTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTTTCAAAGCTATATATTTCTATGAGGAGTACAGATAGCTTGTT  800

seq1  CTCCCTCAGAGCTCTTGAATTATTTCTGTAGGGCTTGACATGACATC-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCCCTCAGAGCTCTTGAATTATTTCTGTAGGGCTTGACATGACATCTTT  850

seq1  GTAATTGAAGATGGGCATAAAAGTAAAGGAAATAAAAACTAAAAAACACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAAGATGGGCATAAAAGTAAAGGAAATAAAAACTAAAAAACACA  900

seq1  TGACAGAATGCTGTAGAAAAGC-TATGTCAGCACATGGTCAAAATTTCCA  948
      |||||||||||||||||||||| ||||||||||||||||  |||||||||
seq2  TGACAGAATGCTGTAGAAAAGCTTATGTCAGCACATGGTTCAAATTTCCA  950

seq1  CAGATTGTCTAGAGAATTGCAATTGTTAATTTAGGAAAC-AGCTG-TATT  996
      ||||||||||||||||||||||||||| ||||||||||| ||||| ||||
seq2  CAGATTGTCTAGAGAATTGCAATTGTT-ATTTAGGAAACAAGCTGTTATT  999

seq1  CTTATCAGTAGAAGCACATTTTAACTGGAGATTTTAAAG-AAAAAATTCT  1045
      ||||||||||| |||||||||| ||| |||||||||||| ||||||||||
seq2  CTTATCAGTAG-AGCACATTTT-ACT-GAGATTTTAAAGAAAAAAATTCT  1046

seq1  GAAGACATTCTCCTGAGGCAGGCATTTTAAAGCCTGATG-TATATGATTT  1094
      |||||||||||||||||||| ||| |||||||| ||||| ||||||||||
seq2  GAAGACATTCTCCTGAGGCAAGCA-TTTAAAGCTTGATGATATATGATTT  1095

seq1  AGTGCCTTGATTTTTTTTCCTGTTGTTTCAATAAAAATACTTTGGCAAAG  1144
      |||| |||||   |||||| ||||| | |||| ||||||           
seq2  AGTG-CTTGA---TTTTTCATGTTGGTCCAATTAAAATA-----------  1130

seq1  ACAACTTAAGGGAGAAAAAGTTTATTTTACCTTTCAGTTTCTGAGTGCCC  1194
                                                        
seq2  --------------------------------------------------  1130

seq1  TGGAAATTGTTATGGTAAATGTATGTTCAGAGTTGTAGAAAGATGTCTGG  1244
                                                        
seq2  --------------------------------------------------  1130

seq1  TCATATGACCATCAGGAAATGGTAATAGTAAGAGAGCCAGGCTAAGATAC  1294
                                                        
seq2  --------------------------------------------------  1130

seq1  TCATGGACCAGCCCTGGTGTCTTACCTCCACCAACAAGGTCACACACCCT  1344
                                                        
seq2  --------------------------------------------------  1130

seq1  AGGACTTCACATCATTTCAACACTATTACATGAGCCTATGTGGGACATTT  1394
                                                        
seq2  --------------------------------------------------  1130

seq1  CACATTCAACCCATAATATTACCTGCTACAATGTGTCTAAAAGTCTCAGA  1444
                                                        
seq2  --------------------------------------------------  1130

seq1  AAGCAATATAAAGAAACTGTATATCATTACTCTGTAATATTTAATCCATG  1494
                                                        
seq2  --------------------------------------------------  1130

seq1  CTAATATGCATTGTATATGCAATTAAAATA  1524
                                    
seq2  ------------------------------  1130


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