BAC Information

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BAC

Clone NameB6Ng01-222F06
Chromosome14 (Build37)
Map Location 45,342,653 - 45,440,268
singlet/doubletdoublet
Overlap geneEG666744
Upstream geneLOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966
Downstream genePtgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222F06.bB6Ng01-222F06.g
ACCGA037378GA037379
length1,2331,163
definitionB6Ng01-222F06.b B6Ng01-222F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,342,653 - 45,343,875)(45,439,122 - 45,440,268)
sequence
gaattcagtgttcatcctgtggtagagcatggcccaaagagtaaatcatc
ctctgaactaagcaatcaagtatcatgtgcaaaaaggcggtatctggaat
tcccaaggaaattgtatgccacatccttgctccttccaactcgtcctatt
ggtactgattaaacttattatcttgggcagaggacagcagagccagggga
ccaaatggagatagctgaccctcaagaaatcttaggtgagcctcaaggaa
tacactagttctgtgaaatgtttctactagactgtcccacaggctttggt
ccttagttttaaggctttttttccctcttagttttaaggcagggataatc
ctttgttcttattgctacatgaattctcagagggcataactagtatataa
cggaaaaggctttataacacttcctactccaggagaatcctatgtgacac
caaggaaaacacagggaataaagaaccctgatgatcaatttgggcctcta
agggctcaacactatcatgccctacaaactgtgcatcacacacatcctaa
gaccccatcaaaggtcccacaaccccagatcctgaacaaaacacacacaa
ctaacttcacacacagaaaaaaattaaaatgccaaataaatccaggtagg
ctccatagtctcagagtacaatgaacaaaacaagagtaaagcagtaatgg
cctgcagacattgaattcttacacagtaaggcagctattgtgaccaggtc
cttccagctgttgacaaaaccaatcagactccaagcacctcaaggccaag
tacaaaagaggatgaccatagagtacacagcacttatctcatccaacaat
ttaacaactctcaagacttcttataatgaatgtgagagatgacacacatg
ggagaaaatgtgggtcaacagagagggcacaatacagtcaacaagatact
gggcataattttacctgtagttcaaatcagtgttcatgtcaatgtccaag
attcgaaaaagttcttcccgctcagcattttttcttctgatataaaattt
caatattcttctagtttattcatatctcaatattgattagagaatgttgc
aacttggatgatgttctccagcagaaccacttgaagaatagaataaacgc
aaattgcattgcataagtggaatggcaaggcaggggagaacattcttgaa
gtgcctaaggaaaagcttgaatgcaagagaaaa
gaattccttagggacacaggcaggagctatggagtacttcgcaatctgtg
ctggggtgatgactgagaaagagaagaaaaggcttagggttgtaggacct
aaaatccagtgttttcttccaaagagatacatatctgctcacattccatt
gcctaaagcaagaagagacagggaatcgaagggaattcagaatgtccgtc
ctctctgaagaactggcaagttatccctgggtaagcagggaatcttagtg
actcattcagggcctaagtatacttgcaatgcagtcaataaacatgaagc
ttaaatcgccccagaagaaccaaacaccattttgtgcaattctttttgag
ctacactctcagaaatggggatggagggctccttctctcttgctttagga
taaatggcaagataaaaggagtaaatggtccctctctccagggaccttat
gtagttggttctgttctcctgaggcatggataatttttaaaagttctttg
gatctaaaagcttctgagagtgtagattaagtatcagctctatagataag
ttgaataaaagtgtgtccttgttcaaataggccagttttaacagaaaata
attccatcagatttttatttcatattgtatgaagtaaccaacaaatttaa
ctgtttccctaaagaaatgagcttaaaacaaactgaaaacttgtttggct
caaaatatgacttaagattttggggtacaccttttctgtgccaccataac
agaggatcatcctggttctctaacagtgatcattgtggtttgcttcaaaa
atctattaaaaatatatgataaacaatatgggtagcacaagttggatttt
gatgttttttttctctttgtaaagaggcgatgatgctgatagtgcgtagg
tacacagtggtttatctgggaatgttttcatggagaaggaaatttctttt
gtgtgagttcttatggaatgttaccctggttatttcttgtactttgtggc
tactatttacttattagtgagtacatactattgcatatccttttgggtct
gagttactcactcagatgattatttttctagtttccatccattgcttgta
aacctcaggatggtgccttggtcttaatagcctgagtagtattttcattg
gttaattgaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_45342653_45343875
seq2: B6Ng01-222F06.b_46_1278

seq1  GAATTCAGTGTTCATCCTGTGGTAGAGCATGGCCCAAAGAGTAAATCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTCATCCTGTGGTAGAGCATGGCCCAAAGAGTAAATCATC  50

seq1  CTCTGAACTAAGCAATCAAGTATCATGTGCAAAAAGGCGGTATCTGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACTAAGCAATCAAGTATCATGTGCAAAAAGGCGGTATCTGGAAT  100

seq1  TCCCAAGGAAATTGTATGCCACATCCTTGCTCCTTCCAACTCGTCCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGAAATTGTATGCCACATCCTTGCTCCTTCCAACTCGTCCTATT  150

seq1  GGTACTGATTAAACTTATTATCTTGGGCAGAGGACAGCAGAGCCAGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGATTAAACTTATTATCTTGGGCAGAGGACAGCAGAGCCAGGGGA  200

seq1  CCAAATGGAGATAGCTGACCCTCAAGAAATCTTAGGTGAGCCTCAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGGAGATAGCTGACCCTCAAGAAATCTTAGGTGAGCCTCAAGGAA  250

seq1  TACACTAGTTCTGTGAAATGTTTCTACTAGACTGTCCCACAGGCTTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAGTTCTGTGAAATGTTTCTACTAGACTGTCCCACAGGCTTTGGT  300

seq1  CCTTAGTTTTAAGGCTTTTTTTCCCTCTTAGTTTTAAGGCAGGGATAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTTTTAAGGCTTTTTTTCCCTCTTAGTTTTAAGGCAGGGATAATC  350

seq1  CTTTGTTCTTATTGCTACATGAATTCTCAGAGGGCATAACTAGTATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTTATTGCTACATGAATTCTCAGAGGGCATAACTAGTATATAA  400

seq1  CGGAAAAGGCTTTATAACACTTCCTACTCCAGGAGAATCCTATGTGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAAGGCTTTATAACACTTCCTACTCCAGGAGAATCCTATGTGACAC  450

seq1  CAAGGAAAACACAGGGAATAAAGAACCCTGATGATCAATTTGGGCCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAACACAGGGAATAAAGAACCCTGATGATCAATTTGGGCCTCTA  500

seq1  AGGGCTCAACACTATCATGCCCTACAAACTGTGCATCACACACATCCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCAACACTATCATGCCCTACAAACTGTGCATCACACACATCCTAA  550

seq1  GACCCCATCAAAGGTCCCACAACCCCAGATCCTGAACAAAACACACACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCATCAAAGGTCCCACAACCCCAGATCCTGAACAAAACACACACAA  600

seq1  CTAACTTCACACACAGAAAAAAATTAAAATGCCAAATAAATCCAGGTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTCACACACAGAAAAAAATTAAAATGCCAAATAAATCCAGGTAGG  650

seq1  CTCCATAGTCTCAGAGTACAATGAACAAAACAAGAGTAAAGCAGTAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGTCTCAGAGTACAATGAACAAAACAAGAGTAAAGCAGTAATGG  700

seq1  CCTGCAGACATTGAATTCTTACACAGTAAGGCAGCTATTGTGACCAGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGACATTGAATTCTTACACAGTAAGGCAGCTATTGTGACCAGGTC  750

seq1  CTTCCAGCTGTTGACAAAACCAATCAGACTCCAAGCACCTCAAGGCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCTGTTGACAAAACCAATCAGACTCCAAGCACCTCAAGGCCAAG  800

seq1  TACAAAAGAGGATGACCATAGAGTACACAGCACTTATCTCATCCAACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGAGGATGACCATAGAGTACACAGCACTTATCTCATCCAACAAT  850

seq1  TTAACAACTCTCAAGACTTCTTATAATGAATGTGAGAGATGACACACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAACTCTCAAGACTTCTTATAATGAATGTGAGAGATGACACACATG  900

seq1  GGAGAAAATGTGGGTCAACAGAGAGGGCACAATACAGTCAACAAGATACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAATGTGGGTCAACAGAGAGGGCACAATACAGTCAACAAGATACT  950

seq1  GGGCATAATTTTACCTGTAGTTCAAATCAGTGTTCATGTCAATGTCCAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAATTTTACCTGTAGTTCAAATCAGTGTTCATGTCAATGTCCAAG  1000

seq1  ATTCGAAAAAGTTCTTCCCGCTCAGCATTTATCTTCCTGATATAAAATTT  1050
      |||||||||||||||||||||||||||||| |  | ||||||||||||||
seq2  ATTCGAAAAAGTTCTTCCCGCTCAGCATTTTTTCTTCTGATATAAAATTT  1050

seq1  C-ATA-TCTTCTAGTTTATTCATATTCTTCATA-TGATTAGAG-ATGTTG  1096
      | ||| |||||||||||||||||| |||  ||| ||||||||| ||||||
seq2  CAATATTCTTCTAGTTTATTCATA-TCTCAATATTGATTAGAGAATGTTG  1099

seq1  CAACTTTGGGATGATGTTCTCCCAGCAGA--CAC-TGAAG-ATAG-ATAA  1141
      ||||||  |||||||||||| ||||||||  ||| ||||| |||| ||||
seq2  CAACTT--GGATGATGTTCT-CCAGCAGAACCACTTGAAGAATAGAATAA  1146

seq1  ACGCAAA-TGCATTTGCATAGTTG--ATGGCCCAGGGCAGGGGAGACCAT  1188
      ||||||| |||| |||||||  ||  ||||  || ||||||||||| |||
seq2  ACGCAAATTGCA-TTGCATAAGTGGAATGG--CAAGGCAGGGGAGAACAT  1193

seq1  TCT--GAGTGCC-AAAGAAAAGGTTGA--GGAAGAGAAAA  1223
      |||   |||||| || |||||| ||||  | |||||||||
seq2  TCTTGAAGTGCCTAAGGAAAAGCTTGAATGCAAGAGAAAA  1233

seq1: chr14_45439122_45440268
seq2: B6Ng01-222F06.g_66_1228 (reverse)

seq1  TGGTTCATTTACCCAATG-AAATACTACTCA-GCTATTAAGAC--AAGCA  46
      ||||||| ||| |||||| |||||||||||| |||||||||||  | |||
seq2  TGGTTCAATTAACCAATGAAAATACTACTCAGGCTATTAAGACCAAGGCA  50

seq1  -CATCCTGAGTTTTACAGCCAAATGGATGG-AACTAGAAAATATCATC--  92
       ||||||||| ||||||  | ||||||||| |||||||||| || |||  
seq2  CCATCCTGAGGTTTACAAGC-AATGGATGGAAACTAGAAAA-ATAATCAT  98

seq1  CTGAGTGAGGTAACTCAGACCCAAAAGGATATGC-ATAGTATGTACTCAC  141
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  CTGAGTGA-GTAACTCAGACCCAAAAGGATATGCAATAGTATGTACTCAC  147

seq1  TAATAAGTAAATAGTAGCCACAAAGTAC-AGAA--TACCAGGGT-ACATT  187
      |||||||||||||||||||||||||||| ||||   |||||||| |||||
seq2  TAATAAGTAAATAGTAGCCACAAAGTACAAGAAATAACCAGGGTAACATT  197

seq1  CCAT-AGAACTCACACAAA--GAATTTCCTTCTCCATG-AAACATTCCCA  233
      |||| ||||||||||||||   |||||||||||||||| |||||||||||
seq2  CCATAAGAACTCACACAAAAGAAATTTCCTTCTCCATGAAAACATTCCCA  247

seq1  GATTAACCACTGTGTACCTACGCACTATCAGCATCATCGCCTCTTTACAA  283
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACCACTGTGTACCTACGCACTATCAGCATCATCGCCTCTTTACAA  297

seq1  AGAG-AAAAAAACATC-AAATCCAACTTGTGCTACCCATATTGTTTATCA  331
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAAAACATCAAAATCCAACTTGTGCTACCCATATTGTTTATCA  347

seq1  TATATTTTTAATAGATTTTTGAAGCAAACCACAATGATCACTGTTAGAGA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTAATAGATTTTTGAAGCAAACCACAATGATCACTGTTAGAGA  397

seq1  ACCAGGATGATCCTCTGTTATGGTGGCACAGAAAAGGTGTACCCCAAAAT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGATGATCCTCTGTTATGGTGGCACAGAAAAGGTGTACCCCAAAAT  447

seq1  CTTAAGTCATATTTTGAGCCAAACAAGTTTTCAGTTTGTTTTAAGCTCAT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTCATATTTTGAGCCAAACAAGTTTTCAGTTTGTTTTAAGCTCAT  497

seq1  TTCTTTAGGGAAACAGTTAAATTTGTTGGTTACTTCATACAATATGAAAT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGGGAAACAGTTAAATTTGTTGGTTACTTCATACAATATGAAAT  547

seq1  AAAAATCTGATGGAATTATTTTCTGTTAAAACTGGCCTATTTGAACAAGG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTGATGGAATTATTTTCTGTTAAAACTGGCCTATTTGAACAAGG  597

seq1  ACACACTTTTATTCAACTTATCTATAGAGCTGATACTTAATCTACACTCT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTTTATTCAACTTATCTATAGAGCTGATACTTAATCTACACTCT  647

seq1  CAGAAGCTTTTAGATCCAAAGAACTTTTAAAAATTATCCATGCCTCAGGA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTTTTAGATCCAAAGAACTTTTAAAAATTATCCATGCCTCAGGA  697

seq1  GAACAGAACCAACTACATAAGGTCCCTGGAGAGAGGGACCATTTACTCCT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAACCAACTACATAAGGTCCCTGGAGAGAGGGACCATTTACTCCT  747

seq1  TTTATCTTGCCATTTATCCTAAAGCAAGAGAGAAGGAGCCCTCCATCCCC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTGCCATTTATCCTAAAGCAAGAGAGAAGGAGCCCTCCATCCCC  797

seq1  ATTTCTGAGAGTGTAGCTCAAAAAGAATTGCACAAAATGGTGTTTGGTTC  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGAGTGTAGCTCAAAAAGAATTGCACAAAATGGTGTTTGGTTC  847

seq1  TTCTGGGGCGATTTAAGCTTCATGTTTATTGACTGCATTGCAAGTATACT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGGCGATTTAAGCTTCATGTTTATTGACTGCATTGCAAGTATACT  897

seq1  TAGGCCCTGAATGAGTCACTAAGATTCCCTGCTTACCCAGGGATAACTTG  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCTGAATGAGTCACTAAGATTCCCTGCTTACCCAGGGATAACTTG  947

seq1  CCAGTTCTTCAGAGAGGACGGACATTCTGAATTCCCTTCGATTCCCTGTC  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTTCAGAGAGGACGGACATTCTGAATTCCCTTCGATTCCCTGTC  997

seq1  TCTTCTTGCTTTAGGCAATGGAATGTGAGCAGATATGTATCTCTTTGGAA  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGCTTTAGGCAATGGAATGTGAGCAGATATGTATCTCTTTGGAA  1047

seq1  GAAAACACTGGATTTTAGGTCCTACAACCCTAAGCCTTTTCTTCTCTTTC  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACTGGATTTTAGGTCCTACAACCCTAAGCCTTTTCTTCTCTTTC  1097

seq1  TCAGTCATCACCCCAGCACAGATTGCGAAGTACTCCATAGCTCCTGCCTG  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATCACCCCAGCACAGATTGCGAAGTACTCCATAGCTCCTGCCTG  1147

seq1  TGTCCCTAAGGAATTC  1147
      ||||||||||||||||
seq2  TGTCCCTAAGGAATTC  1163