BAC Information

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BAC

Clone NameB6Ng01-223A06
Chromosome14 (Build37)
Map Location 51,974,609 - 51,975,405
singlet/doubletsinglet
Overlap genenone
Upstream geneTlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203
Downstream geneLOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223A06.bB6Ng01-223A06.g
ACCGA037876GA037877
length4301,074
definitionB6Ng01-223A06.b B6Ng01-223A06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tatcaaaagattttgttgtgcaaatattgttgcttaacttaaaaccattg
gtaaaataaaattggctactggtgtttactggagggattagacatatgtg
aggttttagttatctggttgtgggtggagaagtgaaagaaaagaggagaa
actataaaaaatggagaatgcaccatggatgagctgcaccatgagggcat
atggaggagaaacagcaaggatttggggggcaccactggaaaggtagcca
ggtgagctgttagaaaagcaaattaggggtcaccccacccaacgtaattg
tctctatttttgtttttttaagacagggttccctgtatatccctggctgt
cctggaactcactttgtagatcatactggcctcaaactcagaaattctcc
ggcctctgcctcacaagtgctgggagtaaa
gaattccttcttttttttctttcttttatttttaaaattttttcctttat
atattttaaactccaggttttttgtttgttttctttttgtttttgttttg
tttggcttgcttttgttttgttttgtttcgagacagggtttctctgtgta
gccctggctgtcctggaactcactttatagaccaggctggcctggaactc
agaaatctatctacctctgcctcctgagtgctgggattaaaggtgtgtgt
caccacaccaggctaaactccagattttattcctctcctggtccaccccc
ataccatatgccataccaccacccgtaaccccctgtgtccacaggatgtc
cccacccccacgcccatcagacctttgaactctctagggcctccattctc
ttgaggcttatgtgaattttctctgactgaatccagacctggcagtcctt
tgctgtatatattttgggggcttcataacagctgttgtatgcagcctggt
tggtattgcagtgtctgagagatctccagggtcaggtttactgtgtgttc
ttgttctccaacagggttgcctccgccctcagcttcttccagctttccaa
caacaggggttagcagctttccataattcaaccacaggggtcagcacaca
accaatggttagaagcactgaccaccagagaacggctcaacctgatatac
aacttcagtacagtggctggatatgaattatatcaaacaaattagtatcc
tttattttactcaaaaaataaacagcctgagaaagaaattagggaaacca
catccttctcaatagtcacaacaaaagaaaataccttggaaggagactct
aaccaggcaagtgaaagattctgtatgacagaacttcaagtctctgaaga
aaagaaatcaaagaacatcctcagaaggtagaagatctccccttctcatg
gatttggcagggatttattattagtaaaaattggcatccatgcattctta
cagattcaacgcattcccatcgaaattttcaaaatcattgttctatactt
agaaaagcaatttgcaattcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_51974609_51975405
seq2: B6Ng01-223A06.g_329_1139

seq1  TAAACTCCAGATTTT-TTCCTCTCCTGGTCCACCCCCATACCATATCCCA  49
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  TAAACTCCAGATTTTATTCCTCTCCTGGTCCACCCCCATACCATATGCCA  50

seq1  TACCTTCACCCAACACCCCCTGTGTCCACAGGATATCCCCACCCCCAC--  97
      ||||  |||||   |||||||||||||||||||| |||||||||||||  
seq2  TACCACCACCCGTAACCCCCTGTGTCCACAGGATGTCCCCACCCCCACGC  100

seq1  ----CAGACCTTTGAACTCTCTAGGGCCTCCATTCTCTTGAGGCTTGTGT  143
          |||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCATCAGACCTTTGAACTCTCTAGGGCCTCCATTCTCTTGAGGCTTATGT  150

seq1  GCATTTTCTCTGACTGAATCTACACCTGGCAGTCCTCTGTTGTATATATT  193
      | |||||||||||||||||| | ||||||||||||| || ||||||||||
seq2  GAATTTTCTCTGACTGAATCCAGACCTGGCAGTCCTTTGCTGTATATATT  200

seq1  TTGGGGGCCTCATAAAAGCTGTTGTATGCAGCCTGGTTGGTATTGCAGTG  243
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCTTCATAACAGCTGTTGTATGCAGCCTGGTTGGTATTGCAGTG  250

seq1  TCTGAGAGATCTCTAGGGTCCAGGTTTACTGAGTCTTCAGGTCCTCCAAC  293
      ||||||||||||| ||||| ||||||||||| || |||  || |||||||
seq2  TCTGAGAGATCTCCAGGGT-CAGGTTTACTGTGTGTTCTTGTTCTCCAAC  299

seq1  AAGGTTACCCCCCCCCCCAGCTTCTTCCAGCTTTCCAAAAACAGGGGTTA  343
      | |||| || || ||| ||||||||||||||||||||| |||||||||||
seq2  AGGGTTGCCTCCGCCCTCAGCTTCTTCCAGCTTTCCAACAACAGGGGTTA  349

seq1  GCAGCTTTCCATAATTCAACCACAGGGGTCAGCACACAACCAATGGTTAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTCCATAATTCAACCACAGGGGTCAGCACACAACCAATGGTTAG  399

seq1  AAGCACTGACCACCAGAGAACTGCTAAACCTGATATACAACTTCAGCAAA  443
      ||||||||||||||||||||| ||| |||||||||||||||||||| | |
seq2  AAGCACTGACCACCAGAGAACGGCTCAACCTGATATACAACTTCAGTACA  449

seq1  GTGGCTGGATATAAATTATGTCAAACAAATCAGTATCC-TTCTTTTACTC  492
      |||||||||||| |||||| |||||||||| ||||||| || ||||||||
seq2  GTGGCTGGATATGAATTATATCAAACAAATTAGTATCCTTTATTTTACTC  499

seq1  AAAAAATAAACAGGCTGAGAAAGAAATTAGGAAAACCGCACCCTTCTCAA  542
      ||||||||||||| ||||||||||||||||| ||||| || |||||||||
seq2  AAAAAATAAACAGCCTGAGAAAGAAATTAGGGAAACCACATCCTTCTCAA  549

seq1  TAGTCACAAACAAAAGAAAATACCTT-GAAGGAGACTCTAACCAGGCAAG  591
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  TAGTCAC-AACAAAAGAAAATACCTTGGAAGGAGACTCTAACCAGGCAAG  598

seq1  TGAAACA-TCTGTATGACAAAACTTCAAGTCTCTGAAG-AAAGAAATCAA  639
      ||||| | ||||||||||| |||||||||||||||||| |||||||||||
seq2  TGAAAGATTCTGTATGACAGAACTTCAAGTCTCTGAAGAAAAGAAATCAA  648

seq1  AGAACAT-GTCAGAAGGTAGAAAGATCTCCCCTTCTCATGGA-TTGGCA-  686
      |||||||  ||||||||||| ||||||||||||||||||||| |||||| 
seq2  AGAACATCCTCAGAAGGTAG-AAGATCTCCCCTTCTCATGGATTTGGCAG  697

seq1  GGATTGAT--ATAGTAAAAA-TGGCCTTTATGCAT--CTACATATTCAAT  731
      ||||| ||   ||||||||| |||| |  ||||||   |||| |||||| 
seq2  GGATTTATTATTAGTAAAAATTGGCATCCATGCATTCTTACAGATTCAAC  747

seq1  GTACTCCTCATCAAAA--TTCAAAATAAATTGTTCTTGTACTTAGAAAAG  779
      | | ||| |||| |||  ||||||||  ||||||| | ||||||||||||
seq2  GCATTCC-CATCGAAATTTTCAAAAT-CATTGTTC-TATACTTAGAAAAG  794

seq1  CAATTTGTAAATTCATTT  797
      |||||||  |||||||||
seq2  CAATTTG-CAATTCATTT  811