BAC Information

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BAC

Clone NameB6Ng01-223F17
Chromosome14 (Build37)
Map Location 96,168,509 - 96,176,441
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
Downstream gene4921530L21Rik, Klhl1, LOC100043366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223F17.bB6Ng01-223F17.g
ACCGA038121GA038122
length1,0941,150
definitionB6Ng01-223F17.b B6Ng01-223F17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,168,509 - 96,169,586)(96,175,291 - 96,176,441)
sequence
gaattcaaatatttcaaataaattcaccaaagagtattttttatcataaa
tgcatatattctcctgatatataaaattatatattaaattaagtatatta
aattaactgcagcagtttaataatagtgattgtggctaagacttacagaa
atatttctcctgaaaggaaaataataaagttacctatatatgaacaaatt
tttaacttgtactaaggtacatgaacttcctgaaattctatattgtttaa
aaattagtgttaggattgactatgcccttgtctcataatatcatagtgtc
acttgttctagcattttaggacatctgtgtggttaatgaaactggaaaac
aatctgcaaatttattgtgagactctactttccttttcaacaatagcatt
gttcaatatgaacctagccttatatggacataaattaaaagcatcatagt
gcacttataagccttaggtgtaatcacagcagaaacactgaaacaaacat
acaatataaagatttagggatgaagggatggcttagcaaactgtgtctca
tcaattgatttttaaattttattcttgtttataataccactatattgttt
ctcctttccctttcctctcttcatatatctttatttgatgttttaaaaat
acacaaactcttttgatttccctacacacacacacacacacacacacaca
cacaccagttacaaacatgtaatgttttcattatacatatatatatatat
atatatatatatatatatatatatatatataattatagtctactctgtca
acacccagtaatgtcacaagctacacccataagtctcaccaacaggattc
cctaatcataacctgatttctgaaagtggcagagtgacctagcaaatcac
atctaatgacgagagagtgactgtaattaaaatccatcccagggcaaaag
ctaataactgacaaatgaaagagaaagcatttaagcttatgttaaaaggt
ggatttaataggctaagaaatgcagtaataacactactaatggacttaaa
atctaatctggaacaggtgctttcaaattctgaagatcaatcat
gaattcacattcaaatagaaagaaaatgtcattcctttgcacctgtcact
cgatggctttgattatcttggtgatagagattgaaaatcccagcatagaa
tctaagaatatagaaagggcattataatgttcaaattcactgtttattca
aatgtgcaacaacacatgcaatacagtacagttttatatcagaataaagc
aaaaggattatgctctttaattatggcattaatatccagataattgaatc
ttagttaacgaagtagagttaagaaatggtattcctgcattacaaaccca
caggactggcaaagaatccaaacagaaaatagagcagaaaagtaaatcat
ctgaaaagggaggattttagaaataaacagcaataggatttcacatagtt
taaaaatataaatgcaatttgagtagctatcctgcagatgtggaaaagca
ctttaacaaaacaaaatctaatttctcctcattacactacatatttcact
catttcaaagtaatttctgtatcgttttctctttaggtgcatgaggtaac
aggacgctaactgtgaaacaccaagctttaatgtaaaaacaagtctaaag
tctgctcttgcctgcaccatactagggaggtgaccttgagtcagttgctt
aacctgtctagaaactggcaggctcctgaggcaatgagggcactgccact
tggattacagtccttgtgacagttgttgtctttcttcaagttttgtgttc
aaggcaggtttataacgctaagaagggaactttaaatcattttctgttct
tgctttcataatgcctttgtaattctggttacaaaaaaattatttttcta
aatgtctcatgttttcttccattttttaattcattcttctctcctacaat
gcatctcatccacagctccccctctcctcttcccagcctggatccacctt
tccctctctcccagattcactgctcttctgtttctcttagaaaatagcag
gccccccagtggtattcaaacaaactgggtataaaaaatgcacttagagt
tgcacaaatcaatctataaggctttgataaaacacccagttagaaggcaa
aggttcagattcagtaaatgagcttcaagaagactcacgtttctcactgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_96168509_96169586
seq2: B6Ng01-223F17.b_44_1137

seq1  GAATTCAAATATTTCAAATAAATTCACCAAAGAGTATTTTTTATCATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATATTTCAAATAAATTCACCAAAGAGTATTTTTTATCATAAA  50

seq1  TGCATATATTCTCCTGATATATAAAATTATATATTAAATTAAGTATATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATATTCTCCTGATATATAAAATTATATATTAAATTAAGTATATTA  100

seq1  AATTAACTGCAGCAGTTTAATAATAGTGATTGTGGCTAAGACTTACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTGCAGCAGTTTAATAATAGTGATTGTGGCTAAGACTTACAGAA  150

seq1  ATATTTCTCCTGAAAGGAAAATAATAAAGTTACCTATATATGAACAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTCCTGAAAGGAAAATAATAAAGTTACCTATATATGAACAAATT  200

seq1  TTTAACTTGTACTAAGGTACATGAACTTCCTGAAATTCTATATTGTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTGTACTAAGGTACATGAACTTCCTGAAATTCTATATTGTTTAA  250

seq1  AAATTAGTGTTAGGATTGACTATGCCCTTGTCTCATAATATCATAGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTGTTAGGATTGACTATGCCCTTGTCTCATAATATCATAGTGTC  300

seq1  ACTTGTTCTAGCATTTTAGGACATCTGTGTGGTTAATGAAACTGGAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTCTAGCATTTTAGGACATCTGTGTGGTTAATGAAACTGGAAAAC  350

seq1  AATCTGCAAATTTATTGTGAGACTCTACTTTCCTTTTCAACAATAGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCAAATTTATTGTGAGACTCTACTTTCCTTTTCAACAATAGCATT  400

seq1  GTTCAATATGAACCTAGCCTTATATGGACATAAATTAAAAGCATCATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATATGAACCTAGCCTTATATGGACATAAATTAAAAGCATCATAGT  450

seq1  GCACTTATAAGCCTTAGGTGTAATCACAGCAGAAACACTGAAACAAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTATAAGCCTTAGGTGTAATCACAGCAGAAACACTGAAACAAACAT  500

seq1  ACAATATAAAGATTTAGGGATGAAGGGATGGCTTAGCAAACTGTGTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATAAAGATTTAGGGATGAAGGGATGGCTTAGCAAACTGTGTCTCA  550

seq1  TCAATTGATTTTTAAATTTTATTCTTGTTTATAATACCACTATATTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGATTTTTAAATTTTATTCTTGTTTATAATACCACTATATTGTTT  600

seq1  CTCCTTTCCCTTTCCTCTCTTCATATATCTTTATTTGATGTTTTAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCCCTTTCCTCTCTTCATATATCTTTATTTGATGTTTTAAAAAT  650

seq1  ACACAAACTCTTTTGATTTCCCTACACACACACACACACACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACTCTTTTGATTTCCCTACACACACACACACACACACACACACA  700

seq1  CACACCAGTTACAAACATGTAATGTTTTCATTATACATATATATATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGTTACAAACATGTAATGTTTTCATTATACATATATATATATAT  750

seq1  ATATATATATATATATATATATATATATATAATTATAGTCTACTCTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATAATTATAGTCTACTCTGTCA  800

seq1  ACACCCAGTAATGTCACAAGCTACACCCATAAGTCTCACCAACAGGATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAGTAATGTCACAAGCTACACCCATAAGTCTCACCAACAGGATTC  850

seq1  CCTAATCATAACCTGATTTCTG-AAGTGGCAGAGTGACCTAGCAAATCAC  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTAATCATAACCTGATTTCTGAAAGTGGCAGAGTGACCTAGCAAATCAC  900

seq1  ATCTAATGACAAGAGAGTGACTGTAATTAAAATCCATCCCAGGGCAAAAG  949
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATGACGAGAGAGTGACTGTAATTAAAATCCATCCCAGGGCAAAAG  950

seq1  CTAATAACTGACAAATG-AAGAGAAAGCATTAAAG-TTATGTTAAAAGGT  997
      ||||||||||||||||| ||||||||||||| ||| ||||||||||||||
seq2  CTAATAACTGACAAATGAAAGAGAAAGCATTTAAGCTTATGTTAAAAGGT  1000

seq1  -GAATTAATAGCCTA--GAATGCAGTAATAACACT-CTAAT-GACT--AA  1040
       || ||||||| |||   ||||||||||||||||| ||||| ||||  ||
seq2  GGATTTAATAGGCTAAGAAATGCAGTAATAACACTACTAATGGACTTAAA  1050

seq1  AT-TTATCTG--ACA-GTGC-TTCAAATTCTGAAG-TCAATCAT  1078
      || | |||||  ||| |||| |||||||||||||| ||||||||
seq2  ATCTAATCTGGAACAGGTGCTTTCAAATTCTGAAGATCAATCAT  1094

seq1: chr14_96175291_96176441
seq2: B6Ng01-223F17.g_66_1215 (reverse)

seq1  ACAGTGAG-AACGTGGGTCTCTGTGACTCT-TTTTCCTGATTCTGGGACC  48
      |||||||| |||||| ||||   |||  ||  ||| |||| ||| | |||
seq2  ACAGTGAGAAACGTGAGTCTTCTTGAAGCTCATTTACTGAATCT-GAACC  49

seq1  TTTTCCCTCTAACTGGGGTGTTTTATCAAGCCTTTATAGGATGGTTTGTG  98
      ||| || ||||||| ||||||||||||||  | ||||||  || ||||||
seq2  TTTGCCTTCTAACT-GGGTGTTTTATCAAAGCCTTATAGATTGATTTGTG  98

seq1  CCAACTCTTAGTGCATTTTTTATACCAAGTTTGTTTG-ATACCACTGGGG  147
       ||||||| ||||||||||||||||| |||||||||| ||||||||||||
seq2  -CAACTCTAAGTGCATTTTTTATACCCAGTTTGTTTGAATACCACTGGGG  147

seq1  GGCCCTGCTATTTTCTTAAGAGAAACAGAAGAGCAGTGAATCTGGGAGAG  197
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GG-CCTGCTATTTTC-TAAGAGAAACAGAAGAGCAGTGAATCTGGGAGAG  195

seq1  AGGG-AAGGTGGATCCAGGCTGGGAAGAGGAGAGGGGGAGCTGTGGATGA  246
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGGTGGATCCAGGCTGGGAAGAGGAGAGGGGGAGCTGTGGATGA  245

seq1  GATGCATTGTAGGAGAGAAGAATGAATTAAAAAATGGAAGAAAACATGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATTGTAGGAGAGAAGAATGAATTAAAAAATGGAAGAAAACATGAG  295

seq1  ACATTTAGAAAAATAATTTTTTTGTAACCAGAATTACAAAGGCATTATGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAGAAAAATAATTTTTTTGTAACCAGAATTACAAAGGCATTATGA  345

seq1  AAGCAAGAACAGAAAATGATTTAAAGTTCCCTTCTTAGCGTTATAAACCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAACAGAAAATGATTTAAAGTTCCCTTCTTAGCGTTATAAACCT  395

seq1  GCCTTGAACACAAAACTTGAAGAAAGACAACAACTGTCACAAGGACTGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAACACAAAACTTGAAGAAAGACAACAACTGTCACAAGGACTGTA  445

seq1  ATCCAAGTGGCAGTGCCCTCATTGCCTCAGGAGCCTGCCAGTTTCTAGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGTGGCAGTGCCCTCATTGCCTCAGGAGCCTGCCAGTTTCTAGAC  495

seq1  AGGTTAAGCAACTGACTCAAGGTCACCTCCCTAGTATGGTGCAGGCAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAGCAACTGACTCAAGGTCACCTCCCTAGTATGGTGCAGGCAAGA  545

seq1  GCAGACTTTAGACTTGTTTTTACATTAAAGCTTGGTGTTTCACAGTTAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTTTAGACTTGTTTTTACATTAAAGCTTGGTGTTTCACAGTTAGC  595

seq1  GTCCTGTTACCTCATGCACCTAAAGAGAAAACGATACAGAAATTACTTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTTACCTCATGCACCTAAAGAGAAAACGATACAGAAATTACTTTG  645

seq1  AAATGAGTGAAATATGTAGTGTAATGAGGAGAAATTAGATTTTGTTTTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTGAAATATGTAGTGTAATGAGGAGAAATTAGATTTTGTTTTGT  695

seq1  TAAAGTGCTTTTCCACATCTGCAGGATAGCTACTCAAATTGCATTTATAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGCTTTTCCACATCTGCAGGATAGCTACTCAAATTGCATTTATAT  745

seq1  TTTTAAACTATGTGAAATCCTATTGCTGTTTATTTCTAAAATCCTCCCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACTATGTGAAATCCTATTGCTGTTTATTTCTAAAATCCTCCCTT  795

seq1  TTCAGATGATTTACTTTTCTGCTCTATTTTCTGTTTGGATTCTTTGCCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGATTTACTTTTCTGCTCTATTTTCTGTTTGGATTCTTTGCCAG  845

seq1  TCCTGTGGGTTTGTAATGCAGGAATACCATTTCTTAACTCTACTTCGTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGGGTTTGTAATGCAGGAATACCATTTCTTAACTCTACTTCGTTA  895

seq1  ACTAAGATTCAATTATCTGGATATTAATGCCATAATTAAAGAGCATAATC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGATTCAATTATCTGGATATTAATGCCATAATTAAAGAGCATAATC  945

seq1  CTTTTGCTTTATTCTGATATAAAACTGTACTGTATTGCATGTGTTGTTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTTTATTCTGATATAAAACTGTACTGTATTGCATGTGTTGTTGC  995

seq1  ACATTTGAATAAACAGTGAATTTGAACATTATAATGCCCTTTCTATATTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAATAAACAGTGAATTTGAACATTATAATGCCCTTTCTATATTC  1045

seq1  TTAGATTCTATGCTGGGATTTTCAATCTCTATCACCAAGATAATCAAAGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTCTATGCTGGGATTTTCAATCTCTATCACCAAGATAATCAAAGC  1095

seq1  CATCGAGTGACAGGTGCAAAGGAATGACATTTTCTTTCTATTTGAATGTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGAGTGACAGGTGCAAAGGAATGACATTTTCTTTCTATTTGAATGTG  1145

seq1  AATTC  1151
      |||||
seq2  AATTC  1150