BAC Information

Click to search

BAC

Clone NameB6Ng01-223I16
Chromosome14 (Build37)
Map Location 4,038,655 - 4,039,829
singlet/doubletsinglet
Overlap geneLOC100040897
Upstream geneLOC100040657, LOC100040671, LOC100040682, LOC100040697, LOC544990, D830030K20Rik, LOC236565, LOC100040740, LOC100040755, LOC100040767, LOC100040779, LOC100038846, EG666890, LOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701
Downstream geneLOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223I16.bB6Ng01-223I16.g
ACCGA038258GA038259
length1,185447
definitionB6Ng01-223I16.b B6Ng01-223I16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaaatctgcctgcctctgcttcccaagtgctgggattaaagta
gtgtgccactatgacctggcttctccagggctttttatccctctaaagta
atcacagagtcgttgggtctcccttgaaacatctcctctgcatagtctga
attatcttggttctgaaccataacagatacctcattattttgtgctcagt
tatgattttatgtgaatcagtctgtgtgtgcttctgtgtgtgtctttgtc
tgtgacagtgtgtctgtgtgtttctttttgtgtatgcattgtttccgtga
cctgtgtctctctcagtatgttgggaggccattcagtgacatctgagttg
tgcagttattctctatattacttctttgagcattggtctctcaataaaag
tgacatttcctgttttgttctgtccagtagtctttgcatctcctgttcac
tatcaggtagcaccccctctcacatttatttcaacaaattgataaacaac
acagctattttaaaaataagtgttagattgcttcactttccctgcataga
tttatctccctgggagatttgggtttgtcttattggctccaccatgaaca
tgcatagaatcctaccgtgcatccctctgctaacatggtttttgtaacta
tattgtgggcatggctttgtttcaggatagattcctcttcatatttggca
cagtgctgcatttcataaatgtcacagcacgttatttcaccagctttctt
cctactgatattgaggaagatttaatatcacatgaactgtaataggttga
aaagttcctgggtagtgaccaaaagtcactgtcttcctctgatgctacca
aggaaccagtgtagttgtagggaaggctactgagagagttaacatggggc
ttgctggaggctttttcttaggaatctcttttcttgggaattttggtatt
gtgttgtccaggttatctgttgcagaagcttgtaacttcctggtagtatc
agaaaggcatctgcataaaaatttttgagaggagttaattacagatgagg
ctactaggactgctgagtctaagaaccttatacctcattacacatcagag
tcccagttagctgcttcatgcaacaggaaaatggtgctttggccgacggt
tatatatccattgatttgtggttgtgtgtatctct
gaattccagactggctaactaaaccagtttgcaatcccaccatcaataga
ggatcatttctctttctccaaatcctcttaaacatgtgttgtcacctgag
gttttgatgttagccattctgattggtataaggtggactctcagggttgt
tttgatttgcatttctctgatcaaaaaggattttgagcatttctttaggt
gcttctcagtcattcaagaatataaacaggccacctcaggaaccacttca
ggaggttggggggaccactcagaatgcaccagagatcttggaggtgagag
actcccaggactcaaagggagagaccttagaagaaatgcccaacataggg
agagagaactttttttattagatattttctttatttacatttcaaatgtt
atcccctttcctaatttcctctctgataatcccttcctctcttccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4038655_4039829
seq2: B6Ng01-223I16.b_47_1231

seq1  GAATTCAGAAATCTGCCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCTGCCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGTA  50

seq1  GTGTGCCACTATGACCTGGCTTCTCCAGGGCTTTTTATCCCTCTAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCACTATGACCTGGCTTCTCCAGGGCTTTTTATCCCTCTAAAGTA  100

seq1  ATCACAGAGTCGTTGGGTCTCCCTTGAAACATCTCCTCTGCATAGTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAGTCGTTGGGTCTCCCTTGAAACATCTCCTCTGCATAGTCTGA  150

seq1  ATTATCTTGGTCCTGAACCATAACAGATACCTCATTATTTTGTGCTCAGT  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTGGTTCTGAACCATAACAGATACCTCATTATTTTGTGCTCAGT  200

seq1  TATGATTTTATGTGAATCAGTCTGTGTGTGCTTCTGTGTGTGTCTTTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTTATGTGAATCAGTCTGTGTGTGCTTCTGTGTGTGTCTTTGTC  250

seq1  TGTGACAGTGTGTCTGTGTGTTTCTTTTTGTGTATGCATTGTTTTCGTGA  300
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGACAGTGTGTCTGTGTGTTTCTTTTTGTGTATGCATTGTTTCCGTGA  300

seq1  CCTGTGTCTCTCTCAGTATGTTGGGAGGCCATTCAGTGACATCTGAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCTCTCTCAGTATGTTGGGAGGCCATTCAGTGACATCTGAGTTG  350

seq1  TGCAGTTATTCTCTATATTACTTCTTTGAGCATTGGTCTCTCAATAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTATTCTCTATATTACTTCTTTGAGCATTGGTCTCTCAATAAAAG  400

seq1  TGACATTTCCTGTTTTGTTCTGTCCAGTAGTCTTTGCATCTCCTGTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTCCTGTTTTGTTCTGTCCAGTAGTCTTTGCATCTCCTGTTCAC  450

seq1  TATCAGGTAGCACCCCCTCTCACATTTATTTCAACAAATTGATAAACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGTAGCACCCCCTCTCACATTTATTTCAACAAATTGATAAACAAC  500

seq1  ACAGCTATTTTAAAAATAAGTGTTAGATTGCTTCACTTTCCCTGCATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATTTTAAAAATAAGTGTTAGATTGCTTCACTTTCCCTGCATAGA  550

seq1  TTTATCTCCCTGGGAGATTTGGGTTTGTCTTATTGGCTCCACCATGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCCCTGGGAGATTTGGGTTTGTCTTATTGGCTCCACCATGAACA  600

seq1  TGCATAGAATCCTACCGTGCATCCCTCTGCTAACATGGTTTTTGTAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGAATCCTACCGTGCATCCCTCTGCTAACATGGTTTTTGTAACTA  650

seq1  TATTGTGGGCATGGCTTTGTTTCAGGATAGATTCCTCTTCATAGTTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATTGTGGGCATGGCTTTGTTTCAGGATAGATTCCTCTTCATATTTGGCA  700

seq1  CAGTGCTGCATTTCATAAATGTCACAGCACGTTATTTCACCAGCTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGCATTTCATAAATGTCACAGCACGTTATTTCACCAGCTTTCTT  750

seq1  CCTACTGATATTGAGGAAGATTTAATATCACATGAACTGTAATAGGTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGATATTGAGGAAGATTTAATATCACATGAACTGTAATAGGTTGA  800

seq1  AAAGTTCCTGGGTAGTGACCAAAAGTCACTGTCTTCCTCTGATGCTACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCTGGGTAGTGACCAAAAGTCACTGTCTTCCTCTGATGCTACCA  850

seq1  AGGAACCAGTGTAGTTGTAGGGAAGGCTACTGAGAGAGTCAACATGGGGC  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGAACCAGTGTAGTTGTAGGGAAGGCTACTGAGAGAGTTAACATGGGGC  900

seq1  TTGCTGGAGGC-TTTTCTTAGGAATCTC-TTTCTTGGGAA-TTTGGTATT  947
      ||||||||||| |||||||||||||||| ||||||||||| |||||||||
seq2  TTGCTGGAGGCTTTTTCTTAGGAATCTCTTTTCTTGGGAATTTTGGTATT  950

seq1  GTGTTGTCCAGGTTATCTG-TGCAG-AGCTTGTAACTTCCTGGTAGTATC  995
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  GTGTTGTCCAGGTTATCTGTTGCAGAAGCTTGTAACTTCCTGGTAGTATC  1000

seq1  AGAAA-GCATCTGCATAAAAAAATTTTTGAAGAGGAGTTAATTACAGATG  1044
      ||||| ||||||||||  ||||||||||| ||||||||||||||||||||
seq2  AGAAAGGCATCTGCAT--AAAAATTTTTG-AGAGGAGTTAATTACAGATG  1047

seq1  AGGGCCACAAAGACTGCCTGAGTCTAAGAACCTTATA-CTCA-TACACAT  1092
      | ||| || | ||||| |||||||||||||||||||| |||| |||||||
seq2  A-GGCTACTAGGACTG-CTGAGTCTAAGAACCTTATACCTCATTACACAT  1095

seq1  CAGAGGTCCCAG-TAGCTGC-TCATGCAACAGGAAA--TGTGC--TGGGC  1136
      |||| ||||||| ||||||| |||||||||||||||   ||||  ||| |
seq2  CAGA-GTCCCAGTTAGCTGCTTCATGCAACAGGAAAATGGTGCTTTGGCC  1144

seq1  GACAGTAATATTTTCATTGATTTGTG--TTTGTGTATCTCT  1175
      ||| || |||| | ||||||||||||  | |||||||||||
seq2  GACGGTTATATATCCATTGATTTGTGGTTGTGTGTATCTCT  1185