BAC Information

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BAC

Clone NameB6Ng01-223N13
Chromosome14 (Build37)
Map Location 118,963,503 - 119,096,359
singlet/doubletdoublet
Overlap geneAbcc4
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
Downstream geneCldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601, EG621324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223N13.bB6Ng01-223N13.g
ACCGA038477GA038478
length1,158732
definitionB6Ng01-223N13.b B6Ng01-223N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,095,221 - 119,096,359)(118,963,503 - 118,964,233)
sequence
gaattcactggacctgcctacctttgtgtacacctccggcccagctcttt
gtcccgttttgaataacagaagggagccggtttcctgtttaagctggtag
gcttggcctctagactccaagtgtatttggaggcgctctgttgctcatcg
acattccgggttttccatggtaagaccgaccctgccatcctaacaggtgc
cagcctggtaaagtacgtgcaggtgcgtgggaaggattgcagcaaaatta
acttcctcttccgctttgatgtggtgctgtgatttgaacccagggccttg
tgcattctagacaagccctccaccactgacctagattctcagtcaagagg
tggcaatggaccaacccatctgtcacaaccaggcccctcctgcattcaga
caacacggaggcttgcttgccaggtggcaggtggcattgtatgaatcctc
ttaactgcctcaggtgacggagccttttttggaatctttgtgacttacca
agaaaatacctcctatttagagatgaactctctgggttcagagacgggtg
ttccctcgttcacctctcagtacgcagttgagccacttacctatcttgtg
ctgtatcggcaatcgcaaaggattattttagttttaatctgggctgcttg
gatttagaatggctgctacctgtccgtaggagcgaggagctcgatggtgt
catatgccaaacccgagctaggagacacagagttctcccagacaattacg
ggaccacgctggaagactctcgtggaagactctttgtgagatatctaacc
ttcactgtcaacttgactggattttaagttaccaagatcggggagacccc
tctggttgtgtctctgggggcaggcattcccagacgtgtggttaccttcc
gtgtggtatcgctatccgtggggcttgggagaggtaacagagaagagaag
gaaaatcaagtcttagagctgggcatcatggcaacctcaacaccttaccc
catttcccggctggccgtaaagtgagcccgggtcttccaccaatttgact
ctgcttggacagccttggaccagcctttcttgcctcttcaagcctgagtt
ggcaacctggcacttgccacaacggccttcctttgcttggatggcagaaa
tagctcgt
gaattctgtgaaggaacaacagctaaacccaaaagaccagctgctgcagc
gtccagttcatcttgaggatttcagtcagaaatactctggtgtgtgtgcg
tgtttgtgcatgtgtgtgtgtgtgtgagagagagagagagagagagagag
agagagagagagagagagacttcaatgaatgaatttcaaccatgttgcac
ataaccacgtaactgtgtacgatataggaagcgcagatctctagaagact
ctcccagactggaactatagaataaagcaggtctgatgaaaagctacaaa
gcctgtgtgttggaaaatgctcaaacataacttgcatacaggagattctt
agactgtgaaccatgcaggaagctaagaacttctgttgctcagaaaacag
gaagctgacaaccatttgacctctcctgctgcaggaacatactgcttgct
tgtccaagcggggcatgccttgactatcattcatggccaaatgctcatga
attcgttcataaaaatgggtattaagagaacaaaaacaaaggcctgaaaa
tacccatctgtctcaagaacgtgactgcaccaagatggcggcagctgcca
aaagcactcctggagccaaggaattctacttccacaaaggtcagcgtcca
actcactgatattaccctgactggtagctgcccgcctgacatgcaaaatc
agctctttccatttccaacacttacacgagcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_119095221_119096359
seq2: B6Ng01-223N13.b_47_1204 (reverse)

seq1  ACGAGCTATTCCTGCATTCAGACAAAAGGGAGG-CGTGGTTGCCAGGTGC  49
      |||||||||| ||||  ||  |  ||||| ||| ||| | || || ||||
seq2  ACGAGCTATTTCTGCCATCCAAGCAAAGGAAGGCCGTTG-TGGCAAGTGC  49

seq1  CAGGT--GCAACTCA-GCTTGAGGAAGCAGGAA--GCT-GTCCAA-GCTG  92
      |||||   ||||||| |||||| || ||| |||  ||| |||||| ||||
seq2  CAGGTTGCCAACTCAGGCTTGAAGAGGCAAGAAAGGCTGGTCCAAGGCTG  99

seq1  TCC-AGCAGAAGTCAAA-TGGTGG-AGACC--GGCTCACTTTACGGCCAG  137
      ||| ||||| ||||||| |||||| |||||  ||||||||||||||||||
seq2  TCCAAGCAG-AGTCAAATTGGTGGAAGACCCGGGCTCACTTTACGGCCAG  148

seq1  CCCGG-AATGGGGT-AGGTGTTG-GGTTGCCATGATG-CCAGCTCT-AGA  182
      || || |||||||| |||||||| ||||||||||||| |||||||| |||
seq2  CCGGGAAATGGGGTAAGGTGTTGAGGTTGCCATGATGCCCAGCTCTAAGA  198

seq1  C-TGGTTTTCCTTCTC-TCTCTGTTACCTCTCCCAAG-CCCACGGATAGC  229
      | || ||||||||||| |||||||||||||||||||| ||||||||||||
seq2  CTTGATTTTCCTTCTCTTCTCTGTTACCTCTCCCAAGCCCCACGGATAGC  248

seq1  GATACCACACGGAAGGTAACCACACGTCTGGGAATGCCTGCCCCCAGAGA  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCACACGGAAGGTAACCACACGTCTGGGAATGCCTGCCCCCAGAGA  298

seq1  CACAACCAGAGGGGTCTCCCCGATCTTGGTAACTTAAAATCCAGTCAAGT  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCAGAGGGGTCTCCCCGATCTTGGTAACTTAAAATCCAGTCAAGT  348

seq1  TGACAGTGAAGGTTAGATATCTCACAAAGAGTCTTCCACGAGAGTCTTCC  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGAAGGTTAGATATCTCACAAAGAGTCTTCCACGAGAGTCTTCC  398

seq1  AGCGTGGTCCCGTAATTGTCTGGGAGAACTCTGTGTCTCCTAGCTCGGGT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGGTCCCGTAATTGTCTGGGAGAACTCTGTGTCTCCTAGCTCGGGT  448

seq1  TTGGCATATGACACCATCGAGCTCCTCGCTCCTACGGACAGGTAGCAGCC  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATATGACACCATCGAGCTCCTCGCTCCTACGGACAGGTAGCAGCC  498

seq1  ATTCTAAATCCAAGCAGCCCAGATTAAAACTAAAATAATCCTTTGCGATT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAATCCAAGCAGCCCAGATTAAAACTAAAATAATCCTTTGCGATT  548

seq1  GCCGATACAGCACAAGATAGGTAAGTGGCTCAACTGCGTACTGAGAGGTG  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGATACAGCACAAGATAGGTAAGTGGCTCAACTGCGTACTGAGAGGTG  598

seq1  AACGAGGGAACACCCGTCTCTGAACCCAGAGAGTTCATCTCTAAATAGGA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGGGAACACCCGTCTCTGAACCCAGAGAGTTCATCTCTAAATAGGA  648

seq1  GGTATTTTCTTGGTAAGTCACAAAGATTCCAAAAAAGGCTCCGTCACCTG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTTCTTGGTAAGTCACAAAGATTCCAAAAAAGGCTCCGTCACCTG  698

seq1  AGGCAGTTAAGAGGATTCATACAATGCCACCTGCCACCTGGCAAGCAAGC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTTAAGAGGATTCATACAATGCCACCTGCCACCTGGCAAGCAAGC  748

seq1  CTCCGTGTTGTCTGAATGCAGGAGGGGCCTGGTTGTGACAGATGGGTTGG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTGTTGTCTGAATGCAGGAGGGGCCTGGTTGTGACAGATGGGTTGG  798

seq1  TCCATTGCCACCTCTTGACTGAGAATCTAGGTCAGTGGTGGAGGGCTTGT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGCCACCTCTTGACTGAGAATCTAGGTCAGTGGTGGAGGGCTTGT  848

seq1  CTAGAATGCACAAGGCCCTGGGTTCAAATCACAGCACCACATCAAAGCGG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATGCACAAGGCCCTGGGTTCAAATCACAGCACCACATCAAAGCGG  898

seq1  AAGAGGAAGTTAATTTTGCTGCAATCCTTCCCACGCACCTGCACGTACTT  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGTTAATTTTGCTGCAATCCTTCCCACGCACCTGCACGTACTT  948

seq1  TACCAGGCTGGCACCTGTTAGGATGGCAGGGTCGGTCTTACCATGGAAAA  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGCTGGCACCTGTTAGGATGGCAGGGTCGGTCTTACCATGGAAAA  998

seq1  CCCGGAATGTCGATGAGCAACAGAGCGCCTCCAAATACACTTGGAGTCTA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGAATGTCGATGAGCAACAGAGCGCCTCCAAATACACTTGGAGTCTA  1048

seq1  GAGGCCAAGCCTACCAGCTTAAACAGGAAACCGGCTCCCTTCTGTTATTC  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAAGCCTACCAGCTTAAACAGGAAACCGGCTCCCTTCTGTTATTC  1098

seq1  AAAACGGGACAAAGAGCTGGGCCGGAGGTGTACACAAAGGTAGGCAGGTC  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGGGACAAAGAGCTGGGCCGGAGGTGTACACAAAGGTAGGCAGGTC  1148

seq1  CAGTGAATTC  1139
      ||||||||||
seq2  CAGTGAATTC  1158

seq1: chr14_118963503_118964233
seq2: B6Ng01-223N13.g_67_798

seq1  GAATTCTGTGAAGGAACAACAGCTAAACCCAAAAGACCAGCTGCTGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAAGGAACAACAGCTAAACCCAAAAGACCAGCTGCTGCAGC  50

seq1  GTCCAGTTCATCTTGAGGATTTCAGTCAGAAATACTCTGGTGTGTGTGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTTCATCTTGAGGATTTCAGTCAGAAATACTCTGGTGTGTGTGCG  100

seq1  TGTTTGTGCATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGCATGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAG  150

seq1  AGAGAGAGAGAGAGAGAGACTTCAATGAATGAATTTCAACCATGTTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGACTTCAATGAATGAATTTCAACCATGTTGCAC  200

seq1  ATAACCACGTAACTGTGTACGATATAGGAAGCGCAGATCTCTAGAAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCACGTAACTGTGTACGATATAGGAAGCGCAGATCTCTAGAAGACT  250

seq1  CTCCCAGACTGGAACTATAGAATAAAGCAGGTCTGATGAAAAGCTACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGACTGGAACTATAGAATAAAGCAGGTCTGATGAAAAGCTACAAA  300

seq1  GCCTGTGTGTTGGAAAATGCTCAAACATAACTTGCATACAGGAGATTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTGTTGGAAAATGCTCAAACATAACTTGCATACAGGAGATTCTT  350

seq1  AGACTGTGAACCATGCAGGAAGCTAAGAACTTCTGTTGCTCAGAAAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGAACCATGCAGGAAGCTAAGAACTTCTGTTGCTCAGAAAACAG  400

seq1  GAAGCTGACAACCATTTGACCTCTCCTGCTGCAGGAACATACTGCTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGACAACCATTTGACCTCTCCTGCTGCAGGAACATACTGCTTGCT  450

seq1  TGTCCAAGCGGGGCATGCCTTGACTATCATTCATGGCCAAATGCTCATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAGCGGGGCATGCCTTGACTATCATTCATGGCCAAATGCTCATGA  500

seq1  ATTCGTTCATAAAAATGGGTATTAAGAGAACAAAAACAAAGGCCTGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTCATAAAAATGGGTATTAAGAGAACAAAAACAAAGGCCTGAAAA  550

seq1  TACCCATCTGTCTCAAGAACGTGACTGCACCAAGATGGCGGCAGCTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATCTGTCTCAAGAACGTGACTGCACCAAGATGGCGGCAGCTGCCA  600

seq1  AAAGCACTCCTGGAGCCAAGGAATTCTACTTCCACAAAGGTCAGCGTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTCCTGGAGCCAAGGAATTCTACTTCCACAAAGGTCAGCGTCCA  650

seq1  ACTCACTGATATTACCCTGACTGGTAGCTG-CCGCCTGACATGCAAAATC  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTCACTGATATTACCCTGACTGGTAGCTGCCCGCCTGACATGCAAAATC  700

seq1  AGCTCTTTCCATTTCCAACACTTACACGAGCG  731
      ||||||||||||||||||||||||||||||||
seq2  AGCTCTTTCCATTTCCAACACTTACACGAGCG  732