BAC Information

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BAC

Clone NameB6Ng01-224A18
Chromosome14 (Build37)
Map Location 105,434,569 - 105,514,149
singlet/doubletdoublet
Overlap geneLOC435420, Rbm26
Upstream genePou4f1, 2610206B13Rik, D130009I18Rik
Downstream geneLOC621103, LOC100043466, Ndfip2, LOC620376, LOC100043469, Spry2, EG621364, LOC212084, Trim52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224A18.bB6Ng01-224A18.g
ACCGA038623GA038624
length9921,128
definitionB6Ng01-224A18.b B6Ng01-224A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,434,569 - 105,435,508)(105,512,988 - 105,514,149)
sequence
gaattcctgactgtaagttctgttctgacctagaagaggttgagagaaca
gcacaaagtatttgctttactgactcgccaagatgtttggaagcaaccga
atctggaacttttaaagattttaaagcatttgcaaattgttttgcccagg
cagacagatgaaaagtcctgtaactgtcctgttttcctctctggacattg
caggggtgctggactctctgcgtgtttttgcaggagagacattgggcgct
ggtgtaccacgtgctctgtgctggcctctgtgctggcctctgtgcgcatg
atcatttctgtggtttccctcacatggctgcaaatgcatctttcatcatt
tttaaattgagatattatggctaatcacttgtttcaatatccttttcaaa
tcatgatatttcattagataatgttcattaagatgtccacacctccaagg
tttatttgattggatgaaaatatctcattgttccagcacaatcagtaaaa
agataaaattatcctttccccacactatctgactttggcacatttgccaa
tactaattgatgaaatatggggcagagtcctgggttttctattctcttcc
actatctgtttatctatacaccagcttttcactgctgatagctatagatt
tctactatgtcttgaattagttattacaaatcatctatttgattttttcc
gagttttttttttaatctacattaggcactcacttcctagtcccatataa
acttcaaaatcaccgtgtaaatttatacaaaaaaaaaaaaatggactgtg
ttaatcaaccgagattatgttgcgtttctaagttaataaaggagtgtggt
ggctattccccattgtcaacttgactatatctggaatgaactacagtcca
taaatggagggccccacctgtgatgcagatcttgaggctggaagaccaca
ggcttttgatccagatccttgaggcatactagcaatgaaaaa

gaattctttgggttatttgtaaattaatgaatagatttgaatacttatga
cccaatacttgttataacatagaggattttgttttactccaaataaggaa
tgaatttgcatttaaaatcttaatgaatgttttcaaaatgagtagatgac
atagtatgctaactaacgtctccaagttatgtattcataatactgcacag
tagtatgcttaggctttactatgtattagccgtttgttggatttgtgtat
gtattttatcacatgggtgttaatgataatggtgtatgactgctttacat
atgagtcctatgcatctggatgctaaaaataaagtggaatggtctcttaa
aagaaaaaagaaaagaaaaaaaaaagcaatgacaaaaaaaaattcatgac
aatgttccttgatttaaaaaagaaaaaagaaaaaagaaaaagaaaaaaag
aaaaaaaaagaaaaaaaagagaaaatgaaacagaccattccagatggtga
tctgcttaccccctatcaaaaagagttataatcactaaataataatggtt
actggtacctttacaataatgtgcaatccaatgtttaaaatttataccac
ttcagtttggcttgatcatataaattttcaacagatgtcttaaaatttaa
aagcaggctgattagtttggaaccagacttcaagtagcgctaacatttgg
tgaataagacaacttcatattacattttggatgtatgaaagaaaacttga
ccatttgaagatgtatgaataaagaaatgtactatagatactactttagg
aaaaccctgtttggtaagtgtcccagtctgatattttaagtgtgcattta
cttttataaaaatctttcacatttgcaacaatactgtgatttttttttaa
agtggattctctagcacgtgaatataattattgaagttaactctttttca
agaaatatattctttgtagacaggtagagattgctagtactgtatctttt
caatctttattattcagtatctctgctctcaggatatagtgattttgtca
tagcacatttaacaaaatacctcctcattggacaccaagcaaactaatct
cacagtacagtctttggaccatatatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_105434569_105435508
seq2: B6Ng01-224A18.b_45_987

seq1  GAATTCCTGACTGTAAGTTCTGTTCTGACCTAGAAGAGGTTGAGAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACTGTAAGTTCTGTTCTGACCTAGAAGAGGTTGAGAGAACA  50

seq1  GCACAAAGTATTTGCTTTACTGACTCGCCAAGATGTTTGGAAGCAACCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGTATTTGCTTTACTGACTCGCCAAGATGTTTGGAAGCAACCGA  100

seq1  ATCTGGAACTTTTAAAGATTTTAAAGCATTTGCAAATTGTTTTGCCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAACTTTTAAAGATTTTAAAGCATTTGCAAATTGTTTTGCCCAGG  150

seq1  CAGACAGATGAAAAGTCCTGTAACTGTCCTGTTTTCCTCTCTGGACATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGATGAAAAGTCCTGTAACTGTCCTGTTTTCCTCTCTGGACATTG  200

seq1  CAGGGGTGCTGGACTCTCTGCGTGTTTTTGCAGGAGAGACATTGGGCGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTGCTGGACTCTCTGCGTGTTTTTGCAGGAGAGACATTGGGCGCT  250

seq1  GGTGTACCACGTGCTCTGTGCTGGCCTCTGTGCTGGCCTCTGTGCGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTACCACGTGCTCTGTGCTGGCCTCTGTGCTGGCCTCTGTGCGCATG  300

seq1  ATCATTTCTGTGGTTTCCCTCACATGGCTGCAAATGCATCTTTCATCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTGTGGTTTCCCTCACATGGCTGCAAATGCATCTTTCATCATT  350

seq1  TTTAAATTGAGATATTATGGCTAATCACTTGTTTCAATATCCTTTTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTGAGATATTATGGCTAATCACTTGTTTCAATATCCTTTTCAAA  400

seq1  TCATGATATTTCATTAGATAATGTTCATTAAGATGTCCACACCTCCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATATTTCATTAGATAATGTTCATTAAGATGTCCACACCTCCAAGG  450

seq1  TTTATTTGATTGGATGAAAATATCTCATTGTTCCAGCACAATCAGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGATTGGATGAAAATATCTCATTGTTCCAGCACAATCAGTAAAA  500

seq1  AGATAAAATTATCCTTTCCCCACACTATCTGACTTTGGCACATTTGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAATTATCCTTTCCCCACACTATCTGACTTTGGCACATTTGCCAA  550

seq1  TACTAATTGATGAAATATGGGGCAGAGTCCTGGGTTTTCTATTCTCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTGATGAAATATGGGGCAGAGTCCTGGGTTTTCTATTCTCTTCC  600

seq1  ACTATCTGTTTATCTATACACCAGCTTTTCACTGCTGATAGCTATAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTGTTTATCTATACACCAGCTTTTCACTGCTGATAGCTATAGATT  650

seq1  TCTACTATGTCTTGAATTAGTTATTACAAATCATCTATTTGATTTTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTATGTCTTGAATTAGTTATTACAAATCATCTATTTGATTTTTTCC  700

seq1  GAGTTTTTTTTTTAATCTACATTAGGCACTCACTTCCTAGTCCCATATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTTTTTTAATCTACATTAGGCACTCACTTCCTAGTCCCATATAA  750

seq1  ACTTCAAAATCACCGTGTAAATTTATAC-AAAAAAAAAAAATGGACTGTG  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACTTCAAAATCACCGTGTAAATTTATACAAAAAAAAAAAAATGGACTGTG  800

seq1  TTAATCAACCGAGATTATGTTGCGTTTCTAAGTTAAT-AAGGAGTGTGGT  848
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAATCAACCGAGATTATGTTGCGTTTCTAAGTTAATAAAGGAGTGTGGT  850

seq1  GGCTATTCCCCATTGTCAACTTGACTATATCTGGAATGAACTACAGTCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTCCCCATTGTCAACTTGACTATATCTGGAATGAACTACAGTCCA  900

seq1  TAAATGGAGGG-CACACCTGTGATGCAGATCTTGAGGCTGGAA  940
      ||||||||||| | |||||||||||||||||||||||||||||
seq2  TAAATGGAGGGCCCCACCTGTGATGCAGATCTTGAGGCTGGAA  943


seq1: chr14_105512988_105514149
seq2: B6Ng01-224A18.g_64_1191 (reverse)

seq1  CTATATTATGGT-CAAAGACTGGTACTGGTGAGATTAGTTT--TTGGTTG  47
      ||||| |||||| |||||||| ||||| |||||||||||||  |||||  
seq2  CTATA-TATGGTCCAAAGACT-GTACT-GTGAGATTAGTTTGCTTGGT--  45

seq1  TGTTGGTCCCCAAATGGAAGAAAGTATTTTTGTTAAAATGTGGTTTAAAA  97
           ||||   ||||  || | ||| ||||||| ||||||| |      
seq2  -----GTCC---AATG--AGGAGGTA-TTTTGTT-AAATGTGCT------  77

seq1  GAAAAAAAAAAAATCACTATAATCTTGAGAAGCAGAGATACTTGAAT-AT  146
          |  | ||||||||||| ||| |||| ||||||||||| ||||| ||
seq2  ----ATGACAAAATCACTAT-ATCCTGAG-AGCAGAGATAC-TGAATAAT  120

seq1  AAAGATTTGAAAAGATACAGTAACCTAGCAATCTCCTACCCTTGTTCTAC  196
      ||||| ||||||||||||||||  |||||||||| |||||  || |||||
seq2  AAAGA-TTGAAAAGATACAGTA--CTAGCAATCT-CTACC--TG-TCTAC  163

seq1  AAAGAATATATTTCTTG-AAAAGAGTTAACTTTCAATAATTATATTCACG  245
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  AAAGAATATATTTCTTGAAAAAGAGTTAAC-TTCAATAATTATATTCACG  212

seq1  TGCTAGAGAATCCACTTTAAAAAAAAAATCACAGTATTGTTGCAAATGTG  295
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCTAGAGAATCCACTTT-AAAAAAAAATCACAGTATTGTTGCAAATGTG  261

seq1  AAAGATTTTTATAAAAGTAAATGCACACTTAAAATATCAGACTGGGACAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTTTATAAAAGTAAATGCACACTTAAAATATCAGACTGGGACAC  311

seq1  TTACCAAACAGGGTTTTCCTAAAGTAGTATCTATAGTACATTTCTTTATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAACAGGGTTTTCCTAAAGTAGTATCTATAGTACATTTCTTTATT  361

seq1  CATACATCTTCAAATGGTCAAGTTTTCTTTCATACATCCAAAATGTAATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATCTTCAAATGGTCAAGTTTTCTTTCATACATCCAAAATGTAATA  411

seq1  TGAAGTTGTCTTATTCACCAAATGTTAGCGCTACTTGAAGTCTGGTTCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTGTCTTATTCACCAAATGTTAGCGCTACTTGAAGTCTGGTTCCA  461

seq1  AACTAATCAGCCTGCTTTTAAATTTTAAGACATCTGTTGAAAATTTATAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATCAGCCTGCTTTTAAATTTTAAGACATCTGTTGAAAATTTATAT  511

seq1  GATCAAGCCAAACTGAAGTGGTATAAATTTTAAACATTGGATTGCACATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGCCAAACTGAAGTGGTATAAATTTTAAACATTGGATTGCACATT  561

seq1  ATTGTAAAGGTACCAGTAACCATTATTATTTAGTGATTATAACTCTTTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAAGGTACCAGTAACCATTATTATTTAGTGATTATAACTCTTTTT  611

seq1  GATAGGGGGTAAGCAGATCACCATCTGGAATGGTCTGTTTCATTTTCTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGGGTAAGCAGATCACCATCTGGAATGGTCTGTTTCATTTTCTCT  661

seq1  TTTTTTTCTTTTTTTTTCTTTTTTTCTTTTTCTTTTTTCTTTTTTCTTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTTTTTTTCTTTTTTTCTTTTTCTTTTTTCTTTTTTCTTTT  711

seq1  TTAAATCAAGGAACATTGTCATGAATTTTTTTTTGTCATTGCTTTTTTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCAAGGAACATTGTCATGAATTTTTTTTTGTCATTGCTTTTTTTT  761

seq1  TTCTTTTCTTTTTTCTTTTAAGAGACCATTCCACTTTATTTTTAGCATCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTTTCTTTTAAGAGACCATTCCACTTTATTTTTAGCATCC  811

seq1  AGATGCATAGGACTCATATGTAAAGCAGTCATACACCATTATCATTAACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCATAGGACTCATATGTAAAGCAGTCATACACCATTATCATTAACA  861

seq1  CCCATGTGATAAAATACATACACAAATCCAACAAACGGCTAATACATAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGATAAAATACATACACAAATCCAACAAACGGCTAATACATAGT  911

seq1  AAAGCCTAAGCATACTACTGTGCAGTATTATGAATACATAACTTGGAGAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTAAGCATACTACTGTGCAGTATTATGAATACATAACTTGGAGAC  961

seq1  GTTAGTTAGCATACTATGTCATCTACTCATTTTGAAAACATTCATTAAGA  1045
      ||||||||||||||||||||||||||                 |||||||
seq2  GTTAGTTAGCATACTATGTCATCTACNNNNNNNNNNNNNNNNNATTAAGA  1011

seq1  TTTTAAATGCAAATTCATTCCTTATTTGGAGTAAAACAAAATCCTCTATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGCAAATTCATTCCTTATTTGGAGTAAAACAAAATCCTCTATG  1061

seq1  TTATAACAAGTATTGGGTCATAAGTATTCAAATCTATTCATTAATTTACA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACAAGTATTGGGTCATAAGTATTCAAATCTATTCATTAATTTACA  1111

seq1  AATAACCCAAAGAATTC  1162
      |||||||||||||||||
seq2  AATAACCCAAAGAATTC  1128


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