BAC Information

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BAC

Clone NameB6Ng01-224B09
Chromosome14 (Build37)
Map Location 84,943,546 - 84,944,642
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
Downstream geneLOC629794, LOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224B09.bB6Ng01-224B09.g
ACCGA038647GA038648
length1,2031,084
definitionB6Ng01-224B09.b B6Ng01-224B09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcac
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacctccttagttagagtcacgccaagatatttatattatt
tgtgactattgagaagggtgttgtttccctaatttctttctcagcctgtt
tattcttttgttatagagaaaggccattgacttgtttgagtttattttaa
tatccagctactcaccgagcttgttatcaggttaaggagtctctgtagaa
ttttaaggtcacttattattcctatcatattcatctgcaaaggtgatttt
ggacttcctctttcagttggaatacctggatcctcctttgggtgtgcgcc
gaa
gaattctggcgtttcctacagactagcactgctctcccagtcagaagctt
ttgacgaagagactgaagacagaagcagagccagaagctctgaaattcat
ctttccagtggacctgatcccattcaccaagacttgcacgcatttttccc
ctggttaaatattgctgtattacaaagcaatgcaattgtgatacactact
actgttcaagctaatttactttctaatggtctatttgcgtagtggaattt
gcattttatttcacagcaaatgttatgatgccacctgccccattttagtg
agatagaacaccaaaactaagaaaagagaagcagttggaactgagaatgt
atattagaagcattttacccacccatcctcacttggcagcactggatcta
gcacacaggatagagcttcaaacacacagaacacaaactgataattcttg
ccctcacttacagggtcacaatttttatttcagtctctactccttccctt
tgtctccctttgattctttcagttcaatgaaggtaatttgcctaagccat
accaagttcattgagagggtgaatttattttgggaaatgttacagacagg
tgagacatgcaaaaattgcactaacctattaaaggtggctacctttaata
ccactgaacatatttgactttttttttttgaccacagcagacacctctcc
agactgtatgtgacagcctaatatggcaaaatattactagcagacctcct
tctgttaccaagagcataaaatatgtggatgtgtgctccctttcttgtag
ggctgcctccctatcagtcttttttttttttttcttattcaaggataaaa
aatcctagaggtgacagctgccattttaagatgactcattatattcatct
agagtcccctaacacatgggtagaacttggcttccagagaccctgacatg
ttacagttcatagcaagcttttcatcttacacacatctgtcactcattat
tcagtaaatactatatggctactggagagctttaaaagtacatgggaaaa
gttcacagtgttttcgtggaacatgatttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84943546_84944642
seq2: B6Ng01-224B09.g_68_1151

seq1  GAATTCTGGCGTTTCCTACAGACTAGCACTGCTCTCCCAGTCAGAAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCGTTTCCTACAGACTAGCACTGCTCTCCCAGTCAGAAGCTT  50

seq1  TTGACGAAGAGACTGAAGACAGAAGCAGAGCCAGAAGCTCTGAAATTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACGAAGAGACTGAAGACAGAAGCAGAGCCAGAAGCTCTGAAATTCAT  100

seq1  CTTTCCAGTGGACCTGATCCCATTCACCAAGACTTGCACGCATTTTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGTGGACCTGATCCCATTCACCAAGACTTGCACGCATTTTTCCC  150

seq1  CTGGTTAAATATTGCTGTATTACAAAGCAATGCAATTGTGATACACTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAAATATTGCTGTATTACAAAGCAATGCAATTGTGATACACTACT  200

seq1  ACTGTTCAAGCTAATTTACTTTCTAATGGTCTATTTGCGTAGTGGAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCAAGCTAATTTACTTTCTAATGGTCTATTTGCGTAGTGGAATTT  250

seq1  GCATTTTATTTCACAGCAAATGTTATGATGCCACCTGCCCCATTTTAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTATTTCACAGCAAATGTTATGATGCCACCTGCCCCATTTTAGTG  300

seq1  AGATAGAACACCAAAACTAAGAAAAGAGAAGCAGTTGGAACTGAGAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAACACCAAAACTAAGAAAAGAGAAGCAGTTGGAACTGAGAATGT  350

seq1  ATATTAGAAGCATTTTACCCACCCATCCTCACTTGGCAGCACTGGATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAAGCATTTTACCCACCCATCCTCACTTGGCAGCACTGGATCTA  400

seq1  GCACACAGGATAGAGCTTCAAACACACAGAACACAAACTGATAATTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGGATAGAGCTTCAAACACACAGAACACAAACTGATAATTCTTG  450

seq1  CCCTCACTTACAGGGTCACAATTTTTATTTCAGTCTCTACTCCTTCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTTACAGGGTCACAATTTTTATTTCAGTCTCTACTCCTTCCCTT  500

seq1  TGTCTCCCTTTGATTCTTTCAGTTCAATGAAGGTAATTTGCCTAAGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCTTTGATTCTTTCAGTTCAATGAAGGTAATTTGCCTAAGCCAT  550

seq1  ACCAAGTTCATTGAGAGGGTGAATTTATTTTGGGAAATGTTACAGACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTTCATTGAGAGGGTGAATTTATTTTGGGAAATGTTACAGACAGG  600

seq1  TGAGACATGCAAAAATTGCACTAACCTATTAAAGGTGGCTACCTTTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATGCAAAAATTGCACTAACCTATTAAAGGTGGCTACCTTTAATA  650

seq1  CCACTGAACATATTTGACTTTTTTTTTTTGACCACAGCAGACACCTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAACATATTTGACTTTTTTTTTTTGACCACAGCAGACACCTCTCC  700

seq1  AGACTGTATGTGACAGCCTAATATGGCAAAATATTACTAGCAGACCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTATGTGACAGCCTAATATGGCAAAATATTACTAGCAGACCTCCT  750

seq1  TCTGTTACCAAGAGCATAAAATATGTGGATGTGTGCTCCCTTTCTTGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACCAAGAGCATAAAATATGTGGATGTGTGCTCCCTTTCTTGTAG  800

seq1  GGCTGCCTCCCTATCAGTC-TTTTTTTTTTTTTCTTATTCAAGGAT-AAA  848
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  GGCTGCCTCCCTATCAGTCTTTTTTTTTTTTTTCTTATTCAAGGATAAAA  850

seq1  AATCCTAGAGGTGACAGCTGCCATTTTAAGATGACTCATTATATTCATCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAGAGGTGACAGCTGCCATTTTAAGATGACTCATTATATTCATCT  900

seq1  AGAGTCCCCTAACACATGGGTAGAACTTGGCTTCCCAGAGAACCCTGACA  948
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  AGAGTCCCCTAACACATGGGTAGAACTTGGCTT-CCAGAG-ACCCTGACA  948

seq1  TGTTACAGTTCATAGCAAGCTTTTCATCTTACACACATCTGTCAACTTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  TGTTACAGTTCATAGCAAGCTTTTCATCTTACACACATCTGTCA--CTCA  996

seq1  TTATTCAGTAAAATTACTAATATGGCTACCTGAGAGCTTTTAAAAGTAAC  1048
      ||||||||||||  |||| ||||||||||  |||||| |||||||||   
seq2  TTATTCAGTAAA--TACT-ATATGGCTACTGGAGAGC-TTTAAAAGT---  1039

seq1  AAATGGGAAAAAGTTCACAAAGTGTTTTCGTGGAACAATGATTTTTTTT  1097
      | ||||| ||||||||||  |||||||||||||||| ||||||||||||
seq2  ACATGGG-AAAAGTTCAC--AGTGTTTTCGTGGAAC-ATGATTTTTTTT  1084