BAC Information

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BAC

Clone NameB6Ng01-224E10
Chromosome14 (Build37)
Map Location 56,841,200 - 57,057,973
singlet/doubletdoublet
Overlap geneGzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17
Upstream geneDhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf
Downstream geneCenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224E10.bB6Ng01-224E10.g
ACCGA038781GA038782
length1,149671
definitionB6Ng01-224E10.b B6Ng01-224E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,056,805 - 57,057,973)(56,841,200 - 56,841,866)
sequence
gaattctgggccagactacattatactgtgagacccctcccatcccccca
aacccaataataaataaataaaaggctaaaaaacccaactttccaacttt
gggatatataaatgtaggtgcatggaatcaatctcatggacatgagataa
gatcagaacagcatgtttctactaagcacatgaacattaactatacataa
gaaatctttccttttttattttactcacattctaggttttcctcaataat
ttcctcaattatcacatcagggctggatcccagttgaggcagtacagcaa
tagtcttaggagatgtcaccacaaccatctcttttgttggctgcttcttt
ttcccttctaaatgcctgtcaggggcctctgcttgcaaaggaggttcagg
tgtttcatcagtcaggacagcagcatctacctttttcttttctagtgatg
agtatacatcacaacagagttcctttctattattaaatttcttttgaaca
ttctgtccatcttcattttcttgagggtaacatctgtttaaaaatacaca
gcaggactactttaatattgatcttcaaactatttcttgctcatttgtta
gtgacagtgtgacacaaaccaagagatcaaagttgtaggtgacctagaga
tatctgtaaacagcttcattgaagcataaacatataccatacaattcaat
gacttggtaaccttaaacagttgcatactctaagatacaatctaatttag
aacatggtcactggcccaagagaactctcttgccctttccaaattcccaa
aggaaccgcttacttaaagctccagcagcctttgagatcatctgttctat
tctgttctgttctgggtttgttttgtttgaagcaggtctaagtggttcag
ttggcttggaatttacctggtctctagtgcataatcttcctgcttcagcc
taccaagtgctgagattacaggtgtatgcaagcacacctggccactttta
gttttaaaagtcaggaggataccatactgaaaactgagaaacttcaaata
gtcatataaatctgatcctaatctctatgatttttcaaagagtcatttga
tttggctaagcgtttcattgaattatatagccatatttcttaccttatt
gaattccccttggtgaccatcaaaatattaatggataatgaaaattggat
actctcacaggtgtgtctgtgtgtatgagcctctgcagcgcgagcacaca
cacacacacacacacacacacacacacacacaattacttgactctaaaga
taaaatgaagctaacaaacttgcagggtatgttgtgccttcatttttatt
aaattgtaaaaaagtcttcaattactttggttcttcaatatccagagatc
attgagtagagttgttccctttcaatgagtgtgtaggctttctggtgttt
ctgttgttgtagtccagctttaatccatggtggtctgaagaatggataaa
gaaaatacggtatatctatacaatggaatagtattcagctattaaaaaca
aagacaacatgaattttgcaggcaaatggatggaatgtgagaatgtcatc
ctgggtgagataacccagtttcaaaaggacatgtaaggtatgcacttcac
ttataagtggatgtactggctagtttttgtgtcaacttgacacagctgga
gttatcacagagaaaggagcttcagttgaggaaatgcctccatgagatcc
aactgtaaggcatttttctcaattagtgatcaaggggggaaaggcccctt
gtgggtgggaccatctcaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_57056805_57057973
seq2: B6Ng01-224E10.b_48_1196 (reverse)

seq1  AATAAAGTAAGAAATAATGCTAATATAATTTAAATGAAACACGTAAGCCA  50
      ||||| ||||||||||  ||| |||||| || |||||||| | | |||||
seq2  AATAAGGTAAGAAATATGGCT-ATATAA-TTCAATGAAACGC-TTAGCCA  47

seq1  AATCAAAATGACTTCTTTTGAAAAATCATGAGATTTTAGGATCAGATTTT  100
      |||| ||||||||   ||||||||||||| |||  |||||||||||||| 
seq2  AATC-AAATGACT--CTTTGAAAAATCAT-AGAGATTAGGATCAGATTT-  92

seq1  AATATGACTATTTGAAGTTTTCCTCAGTTTTTCAGTTATGGTATTCCTCC  150
       |||||||||||||||||||  ||||| ||||||| ||||||| |||| |
seq2  -ATATGACTATTTGAAGTTT--CTCAG-TTTTCAG-TATGGTA-TCCT-C  135

seq1  CTGACTTTTTAAAACCTTAAAGGTGGCCAGGTGTGCTTGCATACACCTGT  200
      ||||| |||||||||  |||| ||||||||||||||||||||||||||||
seq2  CTGAC-TTTTAAAAC--TAAAAGTGGCCAGGTGTGCTTGCATACACCTGT  182

seq1  AATCTCAGCACTTGGTAGGCTGAAGCAGGAAGATTATGCACTAGAGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGCACTTGGTAGGCTGAAGCAGGAAGATTATGCACTAGAGACCA  232

seq1  GGTAAATTCCAAGCCAACCTGAACCACTTAGACCCTGCTTCAAACAAAAC  300
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  GGTAAATTCCAAGCCAA-CTGAACCACTTAGA-CCTGCTTCAAACAAAAC  280

seq1  AAAACCAGAACAGAACAGAATAGAACAGATGATCTCAAAGGCTGCTGGAG  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGAACAGAACAGAATAGAACAGATGATCTCAAAGGCTGCTGGAG  330

seq1  CTTTAAGTAAGCGGTTCCTTTGGGAATTTGGAAAGGGCAAGAGAGTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTAAGCGGTTCCTTTGGGAATTTGGAAAGGGCAAGAGAGTTCTC  380

seq1  TTGGGCCAGTGACCATGTTCTAAATTAGATTGTATCTTAGAGTATGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCAGTGACCATGTTCTAAATTAGATTGTATCTTAGAGTATGCAAC  430

seq1  TGTTTAAGGTTACCAAGTCATTGAATTGTATGGTATATGTTTATGCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGGTTACCAAGTCATTGAATTGTATGGTATATGTTTATGCTTCA  480

seq1  ATGAAGCTGTTTACAGATATCTCTAGGTCACCTACAACTTTGATCTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTGTTTACAGATATCTCTAGGTCACCTACAACTTTGATCTCTTG  530

seq1  GTTTGTGTCACACTGTCACTAACAAATGAGCAAGAAATAGTTTGAAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTCACACTGTCACTAACAAATGAGCAAGAAATAGTTTGAAGATC  580

seq1  AATATTAAAGTAGTCCTGCTGTGTATTTTTAAACAGATGTTACCCTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAAGTAGTCCTGCTGTGTATTTTTAAACAGATGTTACCCTCAAG  630

seq1  AAAATGAAGATGGACAGAATGTTCAAAAGAAATTTAATAATAGAAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAGATGGACAGAATGTTCAAAAGAAATTTAATAATAGAAAGGAA  680

seq1  CTCTGTTGTGATGTATACTCATCACTAGAAAAGAAAAAGGTAGATGCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGTGATGTATACTCATCACTAGAAAAGAAAAAGGTAGATGCTGC  730

seq1  TGTCCTGACTGATGAAACACCTGAACCTCCTTTGCAAGCAGAGGCCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGACTGATGAAACACCTGAACCTCCTTTGCAAGCAGAGGCCCCTG  780

seq1  ACAGGCATTTAGAAGGGAAAAAGAAGCAGCCAACAAAAGAGATGGTTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATTTAGAAGGGAAAAAGAAGCAGCCAACAAAAGAGATGGTTGTG  830

seq1  GTGACATCTCCTAAGACTATTGCTGTACTGCCTCAACTGGGATCCAGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCTCCTAAGACTATTGCTGTACTGCCTCAACTGGGATCCAGCCC  880

seq1  TGATGTGATAATTGAGGAAATTATTGAGGAAAACCTAGAATGTGAGTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGATAATTGAGGAAATTATTGAGGAAAACCTAGAATGTGAGTAAA  930

seq1  ATAAAAAAGGAAAGATTTCTTATGTATAGTTAATGTTCATGTGCTTAGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAGGAAAGATTTCTTATGTATAGTTAATGTTCATGTGCTTAGTA  980

seq1  GAAACATGCTGTTCTGATCTTATCTCATGTCCATGAGATTGATTCCATGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGCTGTTCTGATCTTATCTCATGTCCATGAGATTGATTCCATGC  1030

seq1  ACCTACATTTATATATCCCAAAGTTGGAAAGTTGGGTTTTTTAGCCTTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACATTTATATATCCCAAAGTTGGAAAGTTGGGTTTTTTAGCCTTTT  1080

seq1  ATTTATTTATTATTGGGTTTGGGGGGATGGGAGGGGTCTCACAGTATAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTATTGGGTTTGGGGGGATGGGAGGGGTCTCACAGTATAAT  1130

seq1  GTAGTCTGGCCCAGAATTC  1169
      |||||||||||||||||||
seq2  GTAGTCTGGCCCAGAATTC  1149

seq1: chr14_56841200_56841866
seq2: B6Ng01-224E10.g_71_741

seq1  GAATTCCCCTTGGTGACCATCAAAATATTAATGGATAATGAAAATTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTTGGTGACCATCAAAATATTAATGGATAATGAAAATTGGAT  50

seq1  ACTCTCACAGGTGTGTCTGTGTGTATGAGCCTCTGCAGCGCGAGCACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCACAGGTGTGTCTGTGTGTATGAGCCTCTGCAGCGCGAGCACACA  100

seq1  CACACACACACACACACACACACACACACACAATTACTTGACTCTAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACAATTACTTGACTCTAAAGA  150

seq1  TAAAATGAAGCTAACAAACTTGCAGGGTATGTTGTGCCTTCATTTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAAGCTAACAAACTTGCAGGGTATGTTGTGCCTTCATTTTTATT  200

seq1  AAATTGTAAAAAAGTCTTCAATTACTTTGGTTCTTCAATATCCAGAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTAAAAAAGTCTTCAATTACTTTGGTTCTTCAATATCCAGAGATC  250

seq1  ATTGAGTAGAGTTGTTCCCTTTCAATGAGTGTGTAGGCTTTCTGGTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTAGAGTTGTTCCCTTTCAATGAGTGTGTAGGCTTTCTGGTGTTT  300

seq1  CTGTTGTTGTAGTCCAGCTTTAATCCATGGTGGTCTGAAGAATGGATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTTGTAGTCCAGCTTTAATCCATGGTGGTCTGAAGAATGGATAAA  350

seq1  GAAAATACGGTATATCTATACAATGGAATAGTATTCAGCTATTAAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACGGTATATCTATACAATGGAATAGTATTCAGCTATTAAAAACA  400

seq1  AAGACAACATGAATTTTGCAGGCAAATGGATGGAATGTGAGAATGTCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACATGAATTTTGCAGGCAAATGGATGGAATGTGAGAATGTCATC  450

seq1  CTGGGTGAGATAACCCAGTTTCAAAAGGACATGTAAGGTATGCAC-TCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGGGTGAGATAACCCAGTTTCAAAAGGACATGTAAGGTATGCACTTCAC  500

seq1  TTATAAGTGGATGTACTGGCTAG-TTTTGTGTCAACTTGACACAGCTGGA  548
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTATAAGTGGATGTACTGGCTAGTTTTTGTGTCAACTTGACACAGCTGGA  550

seq1  GTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCC  600

seq1  AACTGTAAGGCA-TTTTCTCAATTAGTGATCAA-GGGGGAAAGGCCCCTT  646
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  AACTGTAAGGCATTTTTCTCAATTAGTGATCAAGGGGGGAAAGGCCCCTT  650

seq1  GTGGGTGGGACCATCTCAGGG  667
      |||||||||||||||||||||
seq2  GTGGGTGGGACCATCTCAGGG  671