BAC Information

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BAC

Clone NameB6Ng01-224E17
Chromosome14 (Build37)
Map Location 53,700,276 - 53,701,411
singlet/doubletsinglet
Overlap geneLOC634322
Upstream geneHnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655
Downstream geneEG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224E17.bB6Ng01-224E17.g
ACCGA038793GA038794
length6031,134
definitionB6Ng01-224E17.b B6Ng01-224E17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtagaagaggaagcagaaagattgtaggagctagtgcagatgg
aaggcactaagggaataattcccttcaaaaacgagtctggttcacatagg
aactaacagagatggcagcagcatacacgggagtcccgagaggtccaata
aagacagggttccattgttaatcataggaagtggacataatgcctcttcc
aaatcaagaaaccatctccaattaacaacttctcacggagaaaaaaaaag
tttttgccaacagtctcacttaagactcacttacacaaaccacagtgaag
ggcatgcccagtggcagatggacaatttttcaagatcattggttgttttt
tttgtatcataatgccttatctgggcattgtttatggcatttgcttacat
agtttatttttcagttttggtttttatggatttgctgtgtgtgcatgtgc
ctcacatgtgtatgtgcttcacctgttttgtttttctatttgctaagctc
aattctggttgtttatttgtttgtttgttttctaaacagagagagaacta
aggcatggaattgattgtgtggggaagtggggaagatatggaaggagatg
agg
gaattccccagaactgagactgtagctgcatcccacagcatctgggttat
gacacggctgctgggggttctgagtgcaccccacagaatctgaattatgg
cgtggttgctggggttcctcagctgcatcccacagcatctgggctatgac
atggctgctggagagctgcaggtgcacaccacagcatctggattctgatg
tgactgctggggattcacacacaggttcccatgatgcacatcgggccatt
atgctattcctgttacaatttcaaagagcataagcaaacagggatcttct
agaattctgaagaattgccctttaccacatgatctagaactagctttatt
aattgcagaatttaaatagaccctagcacttagtaagggaggaagatttt
ttttttcagacaccagtgtttcatggggaaattcatggttgtgaggcttt
aaaaaaattaatctttatcagctgtaggagctctctggtggagtttttgg
ggtcacttaagtacacaatcatatcatctgcatatagtgatattttgact
tcttcctttccaatttgtatccctttaatcctcttttcttgtctaattgc
tctagctagaacttcaagtactgtatagaatagatagggagagagagggc
agctttatctagtcccttattttagtgggattgcttcaaagtttattttc
atttagtttgatgttggctactggtttgctgtatattgctttttactgtg
tttaggtatgggccttgaattcctgatctttccaagacttttagggatcc
atcccatatactgcaacccaacctgaacattattgtggatgccaggaagt
gcttgctgatagtgcaaagggacttaactgagatctacacgactcatatg
gtttcctcagattaggcaattatctcaagtgggggccacaccatgggagt
cgttacaaactttgcagaaacacaaaccctcaaactatggtttagccaca
ttcatgcccttcgtgactttcattcatgtattccaccttttggttaaccc
ctctgttatccattagaaccccagtcttctctgatttgaatgtccatgtt
atcctggggtcataggttaaagaaaattcagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_53700276_53701411
seq2: B6Ng01-224E17.g_66_1199

seq1  GAATTCCCCAGAACTGAGACTGTAGCTGCATCCCACAGCATCTGGGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGAACTGAGACTGTAGCTGCATCCCACAGCATCTGGGTTAT  50

seq1  GACACGGCTGCTGGGGGTTCTGAGTGCACCCCACAGAATCTGAATTATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGGCTGCTGGGGGTTCTGAGTGCACCCCACAGAATCTGAATTATGG  100

seq1  CGTGGTTGCTGGGGTTCCTCAGCTGCATCCCACAGCATCTGGGCTATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTTGCTGGGGTTCCTCAGCTGCATCCCACAGCATCTGGGCTATGAC  150

seq1  ATGGCTGCTGGAGAGCTGCAGGTGCACACCACAGCATCTGGATTCTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGCTGGAGAGCTGCAGGTGCACACCACAGCATCTGGATTCTGATG  200

seq1  TGACTGCTGGGGATTCACACACAGGTTCCCATGATGCACATCGGGCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTGGGGATTCACACACAGGTTCCCATGATGCACATCGGGCCATT  250

seq1  ATGCTATTCCTGTTACAATTTCAAAGAGCATAAGCAAACAGGGATCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTCCTGTTACAATTTCAAAGAGCATAAGCAAACAGGGATCTTCT  300

seq1  AGAATTCTGAAGAATTGCCCTTTACCACATGATCTAGAACTAGCTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTGAAGAATTGCCCTTTACCACATGATCTAGAACTAGCTTTATT  350

seq1  AATTGCAGAATTTAAATAGACCCTAGCACTTAGTAAGGGAGGAAGATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAGAATTTAAATAGACCCTAGCACTTAGTAAGGGAGGAAGATTTT  400

seq1  TTTTTTCAGACACCAGTGTTTCATGGGGAAATTCATGGTTGTGAGGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGACACCAGTGTTTCATGGGGAAATTCATGGTTGTGAGGCTTT  450

seq1  AAAAAAATTAATCTTTATCAGCTGTAGGAGCTCTCTGGTGGAGTTTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTAATCTTTATCAGCTGTAGGAGCTCTCTGGTGGAGTTTTTGG  500

seq1  GGTCACTTAAGTACACAATCATATCATCTGCATATAGTGATATTTTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTTAAGTACACAATCATATCATCTGCATATAGTGATATTTTGACT  550

seq1  TCTTCCTTTCCAATTTGTATCCCTTTAATCCTCTTTTCTTGTCTAATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTCCAATTTGTATCCCTTTAATCCTCTTTTCTTGTCTAATTGC  600

seq1  TCTAGCTAGAACTTCAAGTACTGTATAGAATAGATAGGGAGAGAGAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTAGAACTTCAAGTACTGTATAGAATAGATAGGGAGAGAGAGGGC  650

seq1  AGCTTTATCTAGTCCCTTATTTTAGTGGGATTGCTTC-AAGTTTATTTTC  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGCTTTATCTAGTCCCTTATTTTAGTGGGATTGCTTCAAAGTTTATTTTC  700

seq1  ATTTAGTTTGATGTTGGCTACTGGTTTGCTGTATATTGCTTTTTACTGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTTGATGTTGGCTACTGGTTTGCTGTATATTGCTTTTTACTGTG  750

seq1  TTTAGGTATGGGCCTTGAATTCCTGATCTTTCCAAGACTTTTAGGGATCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTATGGGCCTTGAATTCCTGATCTTTCCAAGACTTTTAGGGATCC  800

seq1  ATCCCATATACTGCAACCAAACCTGAACATTATTGTGGATGCCAGGAAGT  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCCCATATACTGCAACCCAACCTGAACATTATTGTGGATGCCAGGAAGT  850

seq1  GCTTGCTGATAGTGCAAA-GGACTTAACTGAGAATCTACACGACTCAATA  898
      |||||||||||||||||| ||||||||||||| ||||||||||||| |||
seq2  GCTTGCTGATAGTGCAAAGGGACTTAACTGAG-ATCTACACGACTC-ATA  898

seq1  TGGTTTCCTCAGATTAGGCAA-TATCTCAAGT-GGGGCCACACCATGGGA  946
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  TGGTTTCCTCAGATTAGGCAATTATCTCAAGTGGGGGCCACACCATGGGA  948

seq1  GTCGTTACAAACTTTGCAGAAACACAAACCTCAAAACTATGGTTTAGCCA  996
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  GTCGTTACAAACTTTGCAGAAACACAAACCCTCAAACTATGGTTTAGCCA  998

seq1  CAATTCATGCCTTCTGTGACTTTCCATTCAAATGTA-TCCACCTTTTGGT  1045
      | ||||||||| |  |||||||| |||||  ||||| |||||||||||||
seq2  C-ATTCATGCCCTTCGTGACTTT-CATTC--ATGTATTCCACCTTTTGGT  1044

seq1  --AACCCTCTGTTATTCATTTAGAAACCCCAGTCTTCTCTGATTTGGAGT  1093
        | ||||||||||| || |||| |||||||||||||||||||||| |  
seq2  TAACCCCTCTGTTATCCA-TTAG-AACCCCAGTCTTCTCTGATTTGAA--  1090

seq1  TGGTCCATG-TATCCTGTGTCAATAGTTTAAAGAAAA-TCAGCTT  1136
        ||||||| ||||||| |   |||| |||||||||| |||||||
seq2  -TGTCCATGTTATCCTGGGGTCATAGGTTAAAGAAAATTCAGCTT  1134