BAC Information

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BAC

Clone NameB6Ng01-224K11
Chromosome14 (Build37)
Map Location 12,777,692 - 12,931,599
singlet/doubletdoublet
Overlap genePtprg, LOC100042441
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream gene3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224K11.bB6Ng01-224K11.g
ACCGA039050GA039051
length1,1811,129
definitionB6Ng01-224K11.b B6Ng01-224K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,930,427 - 12,931,599)(12,777,692 - 12,778,821)
sequence
gaattcaaatccagggcagcctgaactaacaggctcttcaataatattct
ccgtgtcagctgggctcctaaatcaaatttcaagtggaaaataagaaaac
acacgtttatgtttggacaccatgaagctttgcaggcaagtgaaatacca
gtctctgtagcagcaagaatggcatgtgtagaaagaaaatgtttgcacat
gcaagggtcagcttgctcctttcatctcactgccttgacttgtgtttccc
agacactctgaaggtgaaaggaagaatgaacgcaaagatgcttaaagttc
atgggtaaaaaccaggcaagatgcctccgaccaatccagctcatttctgt
gatgttttgctggtacataatgacatgggtaactatttctgtccttatta
gcccccctccccccagcaaagtcttatttcctagattttgtgctgtgctt
ccagaattcatgcagatattttcagaacgtttagccatgtggccctagat
agtttctctttttcttttccctttaagagatgagccatagtcctctcagt
gagagagcaatagctgcagactagagtctgaaatacttaacttgctcttt
caacaaaacctatttggtaggactctgtcaagactgagacctgcagatgg
acacacacacacacacacacacacacacacacacacacacacacacacga
gtggcaacagacagccagggagaaacaggaccttaaagttggaccacttc
tctcaaggcgtggccttggatcagcttcccagcagtgcctgcatcacttg
cttgtgtcaggtggatcaagcagttggatgtcaagaagactccgtgatgc
ctcctgggctagtttgacctttcctggttgtgcactgatcatgcagcaac
actgaagcacggagctttttgttttgagactggcacctgccctactttgt
gctccccccccccccttttcctaaaccctagagcagagcagatattgcat
tctaagttagctctttaaagataagaccccgaggcagactccagtttctt
tcatggtcttggaacccattccacatatatggaagaaaacgtctgtcaag
ggtgaatttacgaaaaaaggttgagagcagagcgctggtcattcccctct
tggcttgctgttgaaagcttctggtaaagag
gaattcattatttttaatgtgcttttcattagtggatggaaaccgttatt
tgaatcttttgtggaacaataatttcaagatgcaaatttatttatttatt
ttatttttattattattattattttagtttttttcgagacagggtttctc
tgtgtagtactggctgtcctggaactcactctataggccaggctggcctc
aaactcagaaattcgcctgcctctgcctcccaagggttggtattaaaggc
gtatgccaccactgcccagccatatttattttttgaaaaatactatgtat
gtatttaaggaaaccatagtttggaataaggattttgtggattttatgtg
ctacaagtaaatctcctgtctttatcttaggtcagttattaagagagaac
tgtattgaaatggggtggtttgtttaaggtgtagaaaagtacatttgtct
tatctcaacttttaagtcgtgtttctgattgtgggtcatgttgaccatgg
acaaacattaagagagttttctctctccctccctctccctgtctgtctct
ttctctctctccattctatttgcattttgtttgaataatagaatagctat
ttttgccttaaaattgatacctgtggaccagctccttgaagagctgtctg
cctgaaaaaagaagcgctgagtttctaagaagctctgagatagccacctg
gatttgcaggacttgcagctatgtctttgaagggaattctgtctgcagag
agcagacaggctgaaatgaatctccacttgtgtgatttattctccatact
gcgaggatccatcttcctgaagcttatatcctgaaccatagtgacccaca
atgagaaaaatacagtgactttgttaatggccccactaaggatgagtttg
ttattttaggcacagatgaatcccataaattaagctaatatgttgttcct
aaactacagttttttaaaggtggaatttctccaactttataagtcaaggg
cttgtatttcttttttaatgaccgttaattaatgaaccttcaccccttta
ggctgctgaagaccctaccccttcttctttaccaggctttcctttcctgg
ttcttggctgtgtgaatactgttccatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12930427_12931599
seq2: B6Ng01-224K11.b_49_1229 (reverse)

seq1  CTCTTGTACCAGAGACCT--CACAGCAAGCCAAGAGGGG-ATGA-CAGCG  46
      ||||| |||||||  | |   |||||||||||||||||| |||| |||||
seq2  CTCTT-TACCAGAAGCTTTCAACAGCAAGCCAAGAGGGGAATGACCAGCG  49

seq1  CTCTGCTC-AAACCTTTTTTCTGTAA--TCACCCTTGACAGACCGTTTCT  93
      ||||||||  ||||||||||| ||||  |||||||||||||||  |||||
seq2  CTCTGCTCTCAACCTTTTTTC-GTAAATTCACCCTTGACAGACGTTTTCT  98

seq1  TC--TATATGT-GAATTGGTT-CAAGACCATGAAAG-AACT-GAGTCTGC  137
      ||  ||||||| |||| |||| |||||||||||||| |||| ||||||||
seq2  TCCATATATGTGGAATGGGTTCCAAGACCATGAAAGAAACTGGAGTCTGC  148

seq1  CTCGGGGGTCTTATCTTTAAAGAGCTAACTTTAGATGCAATATCTGCTCT  187
      ||| |||||||||||||||||||||||||||   ||||||||||||||||
seq2  CTC-GGGGTCTTATCTTTAAAGAGCTAACTTAGAATGCAATATCTGCTCT  197

seq1  GCTCTTAGGGTTTAGGAAAAGGGGGGGGGGGGAGCAACAAAGTAGGGCAG  237
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCTC-TAGGGTTTAGGAAAAGGGGGGGGGGGGAGC-ACAAAGTAGGGCAG  245

seq1  GTGCCAGTCTCAAAACAAAAAGCTCCGTGCTTCAGTGTTGCTGCATGATC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGTCTCAAAACAAAAAGCTCCGTGCTTCAGTGTTGCTGCATGATC  295

seq1  AGTGCACAACCAGGAAAGGTCAAACTAGCCCAGGAGGCATCACGGAGTCT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACAACCAGGAAAGGTCAAACTAGCCCAGGAGGCATCACGGAGTCT  345

seq1  TCTTGACATCCAACTGCTTGATCCACCTGACACAAGCAAGTGATGCAGGC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACATCCAACTGCTTGATCCACCTGACACAAGCAAGTGATGCAGGC  395

seq1  ACTGCTGGGAAGCTGATCCAAGGCCACGCCTTGAGAGAAGTGGTCCAACT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGGAAGCTGATCCAAGGCCACGCCTTGAGAGAAGTGGTCCAACT  445

seq1  TTAAGGTCCTGTTTCTCCCTGGCTGTCTGTTGCCACTCGTGTGTGTGTGT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTCCTGTTTCTCCCTGGCTGTCTGTTGCCACTCGTGTGTGTGTGT  495

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCATCTGCAGGTCT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCATCTGCAGGTCT  545

seq1  CAGTCTTGACAGAGTCCTACCAAATAGGTTTTGTTGAAAGAGCAAGTTAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTGACAGAGTCCTACCAAATAGGTTTTGTTGAAAGAGCAAGTTAA  595

seq1  GTATTTCAGACTCTAGTCTGCAGCTATTGCTCTCTCACTGAGAGGACTAT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCAGACTCTAGTCTGCAGCTATTGCTCTCTCACTGAGAGGACTAT  645

seq1  GGCTCATCTCTTAAAGGGAAAAGAAAAAGAGAAACTATCTAGGGCCACAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATCTCTTAAAGGGAAAAGAAAAAGAGAAACTATCTAGGGCCACAT  695

seq1  GGCTAAACGTTCTGAAAATATCTGCATGAATTCTGGAAGCACAGCACAAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAACGTTCTGAAAATATCTGCATGAATTCTGGAAGCACAGCACAAA  745

seq1  ATCTAGGAAATAAGACTTTGCTGGGGGGAGGGGGGCTAATAAGGACAGAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGAAATAAGACTTTGCTGGGGGGAGGGGGGCTAATAAGGACAGAA  795

seq1  ATAGTTACCCATGTCATTATGTACCAGCAAAACATCACAGAAATGAGCTG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTACCCATGTCATTATGTACCAGCAAAACATCACAGAAATGAGCTG  845

seq1  GATTGGTCGGAGGCATCTTGCCTGGTTTTTACCCATGAACTTTAAGCATC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTCGGAGGCATCTTGCCTGGTTTTTACCCATGAACTTTAAGCATC  895

seq1  TTTGCGTTCATTCTTCCTTTCACCTTCAGAGTGTCTGGGAAACACAAGTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGTTCATTCTTCCTTTCACCTTCAGAGTGTCTGGGAAACACAAGTC  945

seq1  AAGGCAGTGAGATGAAAGGAGCAAGCTGACCCTTGCATGTGCAAACATTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTGAGATGAAAGGAGCAAGCTGACCCTTGCATGTGCAAACATTT  995

seq1  TCTTTCTACACATGCCATTCTTGCTGCTACAGAGACTGGTATTTCACTTG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTACACATGCCATTCTTGCTGCTACAGAGACTGGTATTTCACTTG  1045

seq1  CCTGCAAAGCTTCATGGTGTCCAAACATAAACGTGTGTTTTCTTATTTTC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAAGCTTCATGGTGTCCAAACATAAACGTGTGTTTTCTTATTTTC  1095

seq1  CACTTGAAATTTGATTTAGGAGCCCAGCTGACACGGAGAATATTATTGAA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAAATTTGATTTAGGAGCCCAGCTGACACGGAGAATATTATTGAA  1145

seq1  GAGCCTGTTAGTTCAGGCTGCCCTGGATTTGAATTC  1173
      ||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGTTAGTTCAGGCTGCCCTGGATTTGAATTC  1181

seq1: chr14_12777692_12778821
seq2: B6Ng01-224K11.g_68_1196

seq1  GAATTCATTATTTTTAATG-GCTTTTCATTAGTGGATGGAAACCGTTATT  49
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATTCATTATTTTTAATGTGCTTTTCATTAGTGGATGGAAACCGTTATT  50

seq1  TGAATCTTTTGTGGAACAATAATTTCAAGATGCAAATTTATTTATTTATT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTTTGTGGAACAATAATTTCAAGATGCAAATTTATTTATTTATT  100

seq1  TTATTTTTATTATTATTATTATTTTAGTTTTTTTCGAGACAGGGTTTCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATTATTATTATTATTTTAGTTTTTTTCGAGACAGGGTTTCTC  150

seq1  TGTGTAGTACTGGCTGTCCTGGAACTCACTCTATAGGCCAGGCTGGCCTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTACTGGCTGTCCTGGAACTCACTCTATAGGCCAGGCTGGCCTC  200

seq1  AAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGGGTTGGTATTAAAGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGGGTTGGTATTAAAGGC  250

seq1  GTATGCCACCACTGCCCAGCCATATTTATTTTTTGAAAAATACTATGTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCACCACTGCCCAGCCATATTTATTTTTTGAAAAATACTATGTAT  300

seq1  GTATTTAAGGAAACCATAGTTTGGAATAAGGATTTTGTGGATTTTATGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAGGAAACCATAGTTTGGAATAAGGATTTTGTGGATTTTATGTG  350

seq1  CTACAAGTAAATCTCCTGTCTTTATCTTAGGTCAGTTATTAAGAGAGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGTAAATCTCCTGTCTTTATCTTAGGTCAGTTATTAAGAGAGAAC  400

seq1  TGTATTGAAATGGGGTGGTTTGTTTAAGGTGTAGAAAAGTACATTTGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGAAATGGGGTGGTTTGTTTAAGGTGTAGAAAAGTACATTTGTCT  450

seq1  TATCTCAACTTTTAAGTCGTGTTTCTGATTGTGGGTCATGTTGACCATGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAACTTTTAAGTCGTGTTTCTGATTGTGGGTCATGTTGACCATGG  500

seq1  ACAAACATTAAGAGAGTTTTCTCTCTCCCTCCCTCTCCCTGTCTGTCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATTAAGAGAGTTTTCTCTCTCCCTCCCTCTCCCTGTCTGTCTCT  550

seq1  TTCTCTCTCTCCATTCTATTTGCATTTTGTTTGAATAATAGAATAGCTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTCCATTCTATTTGCATTTTGTTTGAATAATAGAATAGCTAT  600

seq1  TTTTGCCTTAAAATTGATACCTGTGGACCAGCTCCTTGAAGAGCTGTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTTAAAATTGATACCTGTGGACCAGCTCCTTGAAGAGCTGTCTG  650

seq1  CCTG-AAAAAGAAGCGCTGAGTTTCTAAGAAGCTCTGAGATAGCCACCTG  698
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAAAGAAGCGCTGAGTTTCTAAGAAGCTCTGAGATAGCCACCTG  700

seq1  GATTTGCAGGACTTGCAGCTATGTCTTTGAAGGGAATTCTGTCTGCAGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCAGGACTTGCAGCTATGTCTTTGAAGGGAATTCTGTCTGCAGAG  750

seq1  AGCAGACAGGCTGAAATGAATCTCCACTTGTGTGATTTATTCTCCATACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACAGGCTGAAATGAATCTCCACTTGTGTGATTTATTCTCCATACT  800

seq1  GCGAGGATCCATCTTCCTGAAGCTTATATCCTGAACCATAGTGACCCACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGATCCATCTTCCTGAAGCTTATATCCTGAACCATAGTGACCCACA  850

seq1  ATGAGAAAAATACAGTGAC-TTGTTAATGG-CCCACTAAGGATGAGTTTG  896
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  ATGAGAAAAATACAGTGACTTTGTTAATGGCCCCACTAAGGATGAGTTTG  900

seq1  TTATTTTAAGGCACAGATGA--TCCATAAATTAAGCTAATAATGTTGTTT  944
      ||||||| ||||||||||||   ||||||||||||||||| |||||||| 
seq2  TTATTTT-AGGCACAGATGAATCCCATAAATTAAGCTAAT-ATGTTGTTC  948

seq1  CTTAACTACAG-TTTTTAAAGGT-GAATTTCTCCAACTTTATAAGTCAAA  992
      || |||||||| ||||||||||| ||||||||||||||||||||||| ||
seq2  CTAAACTACAGTTTTTTAAAGGTGGAATTTCTCCAACTTTATAAGTC-AA  997

seq1  AGGCTTTTTTTTTTTTTTTTTTTTTAATGACCG-TAAATAATGAAACTTC  1041
       |||      || | ||| |||||||||||||| ||| ||||||| ||||
seq2  GGGC------TTGTATTTCTTTTTTAATGACCGTTAATTAATGAACCTTC  1041

seq1  A-CCCTTAAGCTTGCTGAAGACCCTACCCCCTCTTCTTTAGCCCAGCTTT  1090
      | ||||| ||  |||||||||||||||||| ||||||||| ||  |||||
seq2  ACCCCTTTAGGCTGCTGAAGACCCTACCCCTTCTTCTTTA-CCAGGCTTT  1090

seq1  TCTTTCCTGGTTCTTTGCTCTGTGTAAATACTG-TCCATGC  1130
       |||||||||||||| |  |||||| ||||||| |||||||
seq2  CCTTTCCTGGTTCTTGG--CTGTGTGAATACTGTTCCATGC  1129