BAC Information

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BAC

Clone NameB6Ng01-224N14
Chromosome14 (Build37)
Map Location 29,833,467 - 29,979,326
singlet/doubletdoublet
Overlap geneCacna2d3, Lrtm1
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218
Downstream genePpia-ps15, EG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224N14.bB6Ng01-224N14.g
ACCGA039195GA039196
length1,1651,169
definitionB6Ng01-224N14.b B6Ng01-224N14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,833,467 - 29,834,632)(29,978,146 - 29,979,326)
sequence
gaattcctaatagactcattccaacccatgtccaagataagctcccaata
cttccaactctgaaaatgttggatcttgctgtaagtgaaggaaaactgag
tacaagatggcacctttatgctctgagcatttagctcagtggtagagcac
ttgatgaacaagtataagaccccaggtttagtcctcagcttcagggagaa
aaatccttagacaactccaaagatctcaaaagaatattcaggcaatatgc
cgtaggtccctgtttcaactcaagctggaaatgttataaacattttaact
ctgatcccatttattaaatagtatcaagaaggcaggcatcagggctcatt
tgatagtagtagcctagcaagcacagatctctgagtgagacccccaggac
catgaaattgagcatggtgctacataccaataaccctgatacaacgacta
ttgttttgagtatgtctaaagacagaaagcaggtttctgtggggcttctg
tggagcaactctgtgaaggggcttctgggaggaaaaccagagatgattag
aagaaggttgtatgccccactaaagcactgcacttctcagtaagaagcaa
ggagatgacagaagtctgatcatctatgagaggatggtaaaagtttctgg
aagaaggatacgacttatattgtttgtaacactttttggtaattttttaa
accatcatagaaaaaaaggagaaagaggatcgccacagattgggttatac
ctgcaaagctagatagctgtttgtaaagggtattccctagtcaataggac
cacctgaagccacatctgataactgaagtataaatgaattaagaccaagt
caaaattaaaagtcagttcttgggttgtagcaatcacattctgggagctc
gggaattacaggtgtctagtgacatccatgttggagggcaggcacagaac
atttctaccaccatacaaagctcaacaggcctaccctcctcctgagagtc
cttttagaactgtgggcatcagcttctttttgtgaccttttctactgcac
agcccacaacacctggctctgaccttcgaagacacatgaccagaatgact
tccctccctgtttcatgtgatattcagtctaaccaaggtctgacgaccag
gttcagcccagtagc
gaattcctttgcttgcagctgtaggactggggtcctgttttcttgctgtc
tggagaccacacccagaggctacctactgttgcttaacacattgccacag
ttacagaagcttactcacttccagaccagcagaatttctctttcctgctc
aaccttcccttaatggcttctcccattaggttaggtgcaccaggctagcc
tcctttacatgaactcgaaggcaatagtttagtgatctgattgtggtaat
tccatcctttcctgtacattctcaagggccagggatttttacagggatgc
atttgttagaggcagaagtcttggggaccagttcagaatgctgccaacca
cagcggctgctcaggctcggtgttcttgtttgacagaagacactgccaga
aggaaatccagccatgtcttttgctacacactttcagtctaaggagactg
tgctcattcttcatagcttttctctctccatgtgcttccaccgtcctggt
ccctttcattatgctctgatgtgagaagggttttcactctggaagcagaa
aacccatgcctctgttgtttttatattatttccaccagggccacaggaag
ttagcatttgttaattatctagaaaatctgagcacttgatctctcaggtt
tctttaaaacgatcttagatcttctttctccctaattacctgactttagc
agttaaggtgtaaggaattctgttcgcttgacccaccaggcttgtaactg
aacccagctttaacaaagataattatgtaattgacttaacagttggcaga
atggttcacaataaccagtgcatgaagttccctctttcttattccttaca
ggtagactcatgatatcctaagtccagacatggtcagggaagtgccgaac
cattaacagagcctggctttggattctagcacttaagcccttggttgtat
ttaccaagcctgactctagtatcagaccggcaaagctctttcatgactcg
tctctggctttttgctaccggtctgattaaatatttcagtgtctgctgta
gctgctcattcaattggctttccgatgaagaccaatattgaagtgaatgg
tacaacataatttatgtttatctatagatctcagtattatttgcaaaacg
gcaaacaccagaaattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_29833467_29834632
seq2: B6Ng01-224N14.b_49_1213

seq1  GAATTCCTAATAGACTCATTCCAACCCATGTCCAAGATAAGCTCCCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATAGACTCATTCCAACCCATGTCCAAGATAAGCTCCCAATA  50

seq1  CTTCCAACTCTGAAAATGTTGGATCTTGCTGTAAGTGAAGGAAAACTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAACTCTGAAAATGTTGGATCTTGCTGTAAGTGAAGGAAAACTGAG  100

seq1  TACAAGATGGCACCTTTATGCTCTGAGCATTTAGCTCAGTGGTAGAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGATGGCACCTTTATGCTCTGAGCATTTAGCTCAGTGGTAGAGCAC  150

seq1  TTGATGAACAAGTATAAGACCCCAGGTTTAGTCCTCAGCTTCAGGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAACAAGTATAAGACCCCAGGTTTAGTCCTCAGCTTCAGGGAGAA  200

seq1  AAATCCTTAGACAACTCCAAAGATCTCAAAAGAATATTCAGGCAATATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTAGACAACTCCAAAGATCTCAAAAGAATATTCAGGCAATATGC  250

seq1  CGTAGGTCCCTGTTTCAACTCAAGCTGGAAATGTTATAAACATTTTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGTCCCTGTTTCAACTCAAGCTGGAAATGTTATAAACATTTTAACT  300

seq1  CTGATCCCATTTATTAAATAGTATCAAGAAGGCAGGCATCAGGGCTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCCATTTATTAAATAGTATCAAGAAGGCAGGCATCAGGGCTCATT  350

seq1  TGATAGTAGTAGCCTAGCAAGCACAGATCTCTGAGTGAGACCCCCAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTAGTAGCCTAGCAAGCACAGATCTCTGAGTGAGACCCCCAGGAC  400

seq1  CATGAAATTGAGCATGGTGCTACATACCAATAACCCTGATACAACGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATTGAGCATGGTGCTACATACCAATAACCCTGATACAACGACTA  450

seq1  TTGTTTTGAGTATGTCTAAAGACAGAAAGCAGGTTTCTGTGGGGCTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGAGTATGTCTAAAGACAGAAAGCAGGTTTCTGTGGGGCTTCTG  500

seq1  TGGAGCAACTCTGTGAAGGGGCTTCTGGGAGGAAAACCAGAGATGATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAACTCTGTGAAGGGGCTTCTGGGAGGAAAACCAGAGATGATTAG  550

seq1  AAGAAGGTTGTATGCCCCACTAAAGCACTGCACTTCTCAGTAAGAAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTTGTATGCCCCACTAAAGCACTGCACTTCTCAGTAAGAAGCAA  600

seq1  GGAGATGACAGAAGTCTGATCATCTATGAGAGGATGGTAAAAGTTTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGACAGAAGTCTGATCATCTATGAGAGGATGGTAAAAGTTTCTGG  650

seq1  AAGAAGGATACGACTTATATTGTTTGTAACACTTTTTGGTAATTTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGATACGACTTATATTGTTTGTAACACTTTTTGGTAATTTTTTAA  700

seq1  ACCATCATAGAAAAAAAGGAGAAAGAGGATCGCCACAGATTGGGTTATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATAGAAAAAAAGGAGAAAGAGGATCGCCACAGATTGGGTTATAC  750

seq1  CTGCAAAGCTAGATAGCTGTTTGT-AAGGGTATTCCCTAGTCAATAGGAC  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGCAAAGCTAGATAGCTGTTTGTAAAGGGTATTCCCTAGTCAATAGGAC  800

seq1  CACCTGAAGCCACATCTGATAACTGAAGTATAAATGAATTAAGACCAAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAAGCCACATCTGATAACTGAAGTATAAATGAATTAAGACCAAGT  850

seq1  CAAAATTAAAAGTCAGTTCTTGGGTTGTAGCAATCACATTCTGGGAGCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTAAAAGTCAGTTCTTGGGTTGTAGCAATCACATTCTGGGAGCTC  900

seq1  GGGAATTACAGGTGTCTAGTGACATCCATGTTGGAGGGCAGGCACAGAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTACAGGTGTCTAGTGACATCCATGTTGGAGGGCAGGCACAGAAC  950

seq1  ATTTCTACCACCATACAAAGCTCAACAGGCCTACCCTCCTCCTGAGAGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTTCTACCACCATACAAAGCTCAACAGGCCTACCCTCCTCCTGAGA-GT  999

seq1  CCTTTTAGAACTGTGGGCATCAGC-TCCTTTTGTGACC-TTTCTACCTGC  1047
      |||||||||||||||||||||||| || |||||||||| |||||| ||| 
seq2  CCTTTTAGAACTGTGGGCATCAGCTTCTTTTTGTGACCTTTTCTA-CTG-  1047

seq1  CACAGCCCAC-ACACCTGGCTCTGACCTCCAAAGGACACATGACCCAGAA  1096
      |||||||||| ||||||||||||||||| | || ||||||||| ||||||
seq2  CACAGCCCACAACACCTGGCTCTGACCTTCGAA-GACACATGA-CCAGAA  1095

seq1  TGACTTTCCCCTCACTGTTTCATGTGATA-TCAGTCTTA-CACAGTCTGA  1144
      ||||||  ||||| ||||||||||||||| ||||||| | ||  ||||||
seq2  TGACTT--CCCTCCCTGTTTCATGTGATATTCAGTCTAACCAAGGTCTGA  1143

seq1  CGACCAAG-TCAGCCACAGTAGC  1166
      |||||| | |||||| |||||||
seq2  CGACCAGGTTCAGCC-CAGTAGC  1165

seq1: chr14_29978146_29979326
seq2: B6Ng01-224N14.g_68_1236 (reverse)

seq1  CAGAA-TTCTGGTGTTTGCTGTTTTGCCAATTAATACATGAGATCTTATT  49
      ||||| ||||||||||||| |||||| ||| |||||| ||||||||   |
seq2  CAGAATTTCTGGTGTTTGCCGTTTTG-CAAATAATAC-TGAGATCT--AT  46

seq1  AGATTAAACATAATTAATGTTGTTAACATTCA-TTCATTTATTTGGTCTT  98
      ||| ||||||||| | |||||| || |||||| |||| |   ||||||||
seq2  AGA-TAAACATAAATTATGTTG-TACCATTCACTTCAAT--ATTGGTCTT  92

seq1  CATCGGGAAAGCAAATTGAATGGAGCAGCTACAGCAGACACTG-AATATT  147
      |||| ||||||| |||||||| ||||||||||||||||||||| ||||||
seq2  CATC-GGAAAGCCAATTGAAT-GAGCAGCTACAGCAGACACTGAAATATT  140

seq1  TAATCAGACCGGTAGCAAAAAGCCAGGAGGACGAGTCATGAAAAGAGCTT  197
      ||||||||||||||||||||||||||   ||||||||||| |||||||||
seq2  TAATCAGACCGGTAGCAAAAAGCCAG--AGACGAGTCATG-AAAGAGCTT  187

seq1  TGCCGTTCTGATACTAGAGTCAGGCTTGGTAAATACAACCAAGGGCCTTA  247
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGCCGGTCTGATACTAGAGTCAGGCTTGGTAAATACAACCAAGGG-CTTA  236

seq1  AGTGCTAGAATCCAAAGCCAGGCTCTGTTAATGGTTCGGCACTTCCCTGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGAATCCAAAGCCAGGCTCTGTTAATGGTTCGGCACTTCCCTGA  286

seq1  CCATGTCTGGACTTAGGATATCATGAGTCTACCTGTAAGGAATAAGAAAA  347
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCATGTCTGGACTTAGGATATCATGAGTCTACCTGTAAGGAATAAG-AAA  335

seq1  GAGGGAACTTCATGCACTGGTTATTGTGAACCATTCTGCCAACTGTTAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAACTTCATGCACTGGTTATTGTGAACCATTCTGCCAACTGTTAAG  385

seq1  TCAATTACATAATTATCTTTGTTAAAGCTGGGTTCAGTTACAAGCCTGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTACATAATTATCTTTGTTAAAGCTGGGTTCAGTTACAAGCCTGGT  435

seq1  GGGTCAAGCGAACAGAATTCCTTACACCTTAACTGCTAAAGTCAGGTAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAGCGAACAGAATTCCTTACACCTTAACTGCTAAAGTCAGGTAAT  485

seq1  TAGGGAGAAAGAAGATCTAAGATCGTTTTAAAGAAACCTGAGAGATCAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGAAAGAAGATCTAAGATCGTTTTAAAGAAACCTGAGAGATCAAG  535

seq1  TGCTCAGATTTTCTAGATAATTAACAAATGCTAACTTCCTGTGGCCCTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGATTTTCTAGATAATTAACAAATGCTAACTTCCTGTGGCCCTGG  585

seq1  TGGAAATAATATAAAAACAACAGAGGCATGGGTTTTCTGCTTCCAGAGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATAATATAAAAACAACAGAGGCATGGGTTTTCTGCTTCCAGAGTG  635

seq1  AAAACCCTTCTCACATCAGAGCATAATGAAAGGGACCAGGACGGTGGAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTTCTCACATCAGAGCATAATGAAAGGGACCAGGACGGTGGAAG  685

seq1  CACATGGAGAGAGAAAAGCTATGAAGAATGAGCACAGTCTCCTTAGACTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGAGAGAGAAAAGCTATGAAGAATGAGCACAGTCTCCTTAGACTG  735

seq1  AAAGTGTGTAGCAAAAGACATGGCTGGATTTCCTTCTGGCAGTGTCTTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTGTAGCAAAAGACATGGCTGGATTTCCTTCTGGCAGTGTCTTCT  785

seq1  GTCAAACAAGAACACCGAGCCTGAGCAGCCGCTGTGGTTGGCAGCATTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACAAGAACACCGAGCCTGAGCAGCCGCTGTGGTTGGCAGCATTCT  835

seq1  GAACTGGTCCCCAAGACTTCTGCCTCTAACAAATGCATCCCTGTAAAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGTCCCCAAGACTTCTGCCTCTAACAAATGCATCCCTGTAAAAAT  885

seq1  CCCTGGCCCTTGAGAATGTACAGGAAAGGATGGAATTACCACAATCAGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCCCTTGAGAATGTACAGGAAAGGATGGAATTACCACAATCAGAT  935

seq1  CACTAAACTATTGCCTTCGAGTTCATGTAAAGGAGGCTAGCCTGGTGCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAACTATTGCCTTCGAGTTCATGTAAAGGAGGCTAGCCTGGTGCAC  985

seq1  CTAACCTAATGGGAGAAGCCATTAAGGGAAGGTTGAGCAGGAAAGAGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTAATGGGAGAAGCCATTAAGGGAAGGTTGAGCAGGAAAGAGAAA  1035

seq1  TTCTGCTGGTCTGGAAGTGAGTAAGCTTCTGTAACTGTGGCAATGTGTTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGGTCTGGAAGTGAGTAAGCTTCTGTAACTGTGGCAATGTGTTA  1085

seq1  AGCAACAGTAGGTAGCCTCTGGGTGTGGTCTCCAGACAGCAAGAAAACAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGTAGGTAGCCTCTGGGTGTGGTCTCCAGACAGCAAGAAAACAG  1135

seq1  GACCCCAGTCCTACAGCTGCAAGCAAAGGAATTC  1181
      ||||||||||||||||||||||||||||||||||
seq2  GACCCCAGTCCTACAGCTGCAAGCAAAGGAATTC  1169