BAC Information

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BAC

Clone NameB6Ng01-225G12
Chromosome14 (Build37)
Map Location 47,938,160 - 47,963,227
singlet/doubletdoublet
Overlap geneC130032J12Rik
Upstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795
Downstream geneLgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225G12.bB6Ng01-225G12.g
ACCGA039609GA039610
length9581,192
definitionB6Ng01-225G12.b B6Ng01-225G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,962,280 - 47,963,227)(47,938,160 - 47,939,350)
sequence
gaattcttgtaggcaaaaagtatgtgcagtgaaagacaattgcaagaacg
cagtcccacagacttattgctgtagcacacgcactttctaagggcctggc
ttgtctcgttctttctttttttccagccaccccaagttagagacagccag
tgctccagtatctgtgacagatctgtactaggaagcagccgtccatccag
cgggcctaactccagtcccgccccctaccatgggttctcccattcccttc
tgtggcttctccacatttgtgtgcagctcagctctgaatgcttttcccaa
ccaggtgtcatcgtgaagcctggtgcagaattgacacccacaagtctgat
gctgatttgattcctacacatctgcatggtgcagattttgaatccagact
tggatctcagtgctcaggaggcagaagcaagttcttcaaggccagcctgg
tctacagagcgagttccaggatagccagggttacacagagaaactcagtc
tggaaaaaaaaaacactaactaactaactaactaactaactaactaacta
actaactaactggatgttagtgtgctggagagactgactgttcttcagag
gactcaaactcatttctcagcactcacatggcagctcgcaactgtctgta
actctagtcccaatctctttcttgctctcttggacacaaacatccatttc
agacaaacacgcatacaaaatgaaatagaagtaaataagtctcgaaaagc
attcaactctttaaaatgttaaattacccgtacaaggtattagagctcag
tatagtcatttttacaatctgagtgtcttagtgctctcttcccctcgcct
ccctctctttgctgctcttatccccctgtggccctttccttgagagcctt
gtcatctttcctgttcccatgcaccctctcccccactcccaccccatcct
cgtgccct
gaattctgtgtgcccattttccagctgttctgagtgactggtgaagactc
cgtagctttgcagccaattttgctctgtgtctgtaggttcgcacatttct
acaaaatttcagaaagtcaatagcatttcccatctgaggtgtaattagtc
cttggtgatcttcattggattatcaaaagccagctgttgactaagaactt
gatcttgctcctctctaactcagttctcaggagcatctttctggcttcct
gtgaaaatcagcatagcactcagagggaccttttattcatgttacagata
agacaaggggtcagatcccgatgctgtttttatccaggcaactgtagctc
gtcctgaacgtggaagggctgctggaggtatatcatgcgactgatgctta
ttctggacaccaggaattcttgcaggcaatctgatagttaggactgcagt
acttgcgctcctcctttttaaagaaaatgatgtaaatgaggtggcttaaa
gtctcacacaatcgccaaatttaatcggagcatcagatagtttatactct
ggcgtttaagaagatttatgtaaatgtacaattataagcctcacgtggtg
gagcaagctgaaggcagcaaaaaacattttccatagaggcatataaagaa
ataacaatagccagttgtaatgaataatctgaagtgaactatctgctaca
tctgggaggggcacaaaagcagaatgtaagaacaattccctgtgttttga
agaaacaggtcacaagactcctgtctcggtttcttggagttttcttacag
gcactcagaaatctcacatgattctaattttgagccctgttctgaccgtt
actctgctgcttctggtattcacagagacccacaattatagaagttgatt
tttttttcccttttttttctgttgcagtcttaccattaagttgacagtgg
atgaagagatggcgcatgcttttttgaagtacatgtgtatgcacgaagaa
agcatatataatggctggtttcgctgttggttggagggcattttgtgaaa
gaacttgcacctcagttcctgcttcatgtgtttgatatgtagacattcac
gtgggttacaatccagataatgtaggagcgaatcatcagttgcctatgtg
attattggttattgaataacattggataaatatttgctttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_47962280_47963227
seq2: B6Ng01-225G12.b_45_1002 (reverse)

seq1  AGGGCACGAGGAT-GGGTGGGAGTGGGGGAGAGGGTGCATGGG-ACAGGA  48
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  AGGGCACGAGGATGGGGTGGGAGTGGGGGAGAGGGTGCATGGGAACAGGA  50

seq1  AAGATGCACAAGGCTCTC-AGGAAAGGGCCACA-GGGGATAAGAGCAGCA  96
      |||||| ||||||||||| |||||||||||||| ||||||||||||||||
seq2  AAGATG-ACAAGGCTCTCAAGGAAAGGGCCACAGGGGGATAAGAGCAGCA  99

seq1  AAGAGAGGGAGGCGAGGGGAAG-GAGCACTAAGACACTCAGATTGT-AAA  144
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  AAGAGAGGGAGGCGAGGGGAAGAGAGCACTAAGACACTCAGATTGTAAAA  149

seq1  ATG-CTATACTGAGCTCTAATACCTTGTAC-GGTAATTTTACATTTTAAA  192
      ||| |||||||||||||||||||||||||| |||||||| ||||||||||
seq2  ATGACTATACTGAGCTCTAATACCTTGTACGGGTAATTTAACATTTTAAA  199

seq1  GAGTTGAATGC-TTTCGAGACTTATTTACTTCTATTTCA-TTTGTATGCG  240
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  GAGTTGAATGCTTTTCGAGACTTATTTACTTCTATTTCATTTTGTATGCG  249

seq1  TGTTTGTCTG-AATGGATGTTTGTGTCCAAGAGAGCAAGAAAGAGATTGG  289
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCTGAAATGGATGTTTGTGTCCAAGAGAGCAAGAAAGAGATTGG  299

seq1  GACTAGAGTTACAGACAGTTGCGAGCTGCCATGTGAGTGCTGGGAAATGA  339
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GACTAGAGTTACAGACAGTTGCGAGCTGCCATGTGAGTGCTGAGAAATGA  349

seq1  GTTTGAGTCCTCTGAAGAACAGTCAGTCTCTCCAGCACACTAACATCCAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTCCTCTGAAGAACAGTCAGTCTCTCCAGCACACTAACATCCAG  399

seq1  TTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTGTTTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTGTTTT  449

seq1  TTTTTTCCAGACTGAGTTTCTCTGTGTAACCCTGGCTATCCTGGAACTCG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCAGACTGAGTTTCTCTGTGTAACCCTGGCTATCCTGGAACTCG  499

seq1  CTCTGTAGACCAGGCTGGCCTTGAAGAACTTGCTTCTGCCTCCTGAGCAC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGACCAGGCTGGCCTTGAAGAACTTGCTTCTGCCTCCTGAGCAC  549

seq1  TGAGATCCAAGTCTGGATTCAAAATCTGCACCATGCAGATGTGTAGGAAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCCAAGTCTGGATTCAAAATCTGCACCATGCAGATGTGTAGGAAT  599

seq1  CAAATCAGCATCAGACTTGTGGGTGTCAATTCTGCACCAGGCTTCACGAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGCATCAGACTTGTGGGTGTCAATTCTGCACCAGGCTTCACGAT  649

seq1  GACACCTGGTTGGGAAAAGCATTCAGAGCTGAGCTGCACACAAATGTGGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTGGTTGGGAAAAGCATTCAGAGCTGAGCTGCACACAAATGTGGA  699

seq1  GAAGCCACAGAAGGGAATGGGAGAACCCATGGTAGGGGGCGGGACTGGAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACAGAAGGGAATGGGAGAACCCATGGTAGGGGGCGGGACTGGAG  749

seq1  TTAGGCCCGCTGGATGGACGGCTGCTTCCTAGTACAGATCTGTCACAGAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCCGCTGGATGGACGGCTGCTTCCTAGTACAGATCTGTCACAGAT  799

seq1  ACTGGAGCACTGGCTGTCTCTAACTTGGGGTGGCTGGAAAAAAAGAAAGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGCACTGGCTGTCTCTAACTTGGGGTGGCTGGAAAAAAAGAAAGA  849

seq1  ACGAGACAAGCCAGGCCCTTAGAAAGTGCGTGTGCTACAGCAATAAGTCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGACAAGCCAGGCCCTTAGAAAGTGCGTGTGCTACAGCAATAAGTCT  899

seq1  GTGGGACTGCGTTCTTGCAATTGTCTTTCACTGCACATACTTTTTGCCTA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACTGCGTTCTTGCAATTGTCTTTCACTGCACATACTTTTTGCCTA  949

seq1  CAAGAATTC  948
      |||||||||
seq2  CAAGAATTC  958

seq1: chr14_47938160_47939350
seq2: B6Ng01-225G12.g_62_1253

seq1  GAATTCTGTGTGCCCATTTTCCAGCTGTTCTGAGTGACTGGTGAAGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTGCCCATTTTCCAGCTGTTCTGAGTGACTGGTGAAGACTC  50

seq1  CGTAGCTTTGCAGCCAATTTTGCTCTGTGTCTGTAGGTTCGCACATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGCTTTGCAGCCAATTTTGCTCTGTGTCTGTAGGTTCGCACATTTCT  100

seq1  ACAAAATTTCAGAAAGTCAATAGCATTTCCCATCTGAGGTGTAATTAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTTCAGAAAGTCAATAGCATTTCCCATCTGAGGTGTAATTAGTC  150

seq1  CTTGGTGATCTTCATTGGATTATCAAAAGCCAGCTGTTGACTAAGAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGATCTTCATTGGATTATCAAAAGCCAGCTGTTGACTAAGAACTT  200

seq1  GATCTTGCTCCTCTCTAACTCAGTTCTCAGGAGCATCTTTCTGGCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGCTCCTCTCTAACTCAGTTCTCAGGAGCATCTTTCTGGCTTCCT  250

seq1  GTGAAAATCAGCATAGCACTCAGAGGGACCTTTTATTCATGTTACAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATCAGCATAGCACTCAGAGGGACCTTTTATTCATGTTACAGATA  300

seq1  AGACAAGGGGTCAGATCCCGATGCTGTTTTTATCCAGGCAACTGTAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGGGTCAGATCCCGATGCTGTTTTTATCCAGGCAACTGTAGCTC  350

seq1  GTCCTGAACGTGGAAGGGCTGCTGGAGGTATATCATGCGACTGATGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAACGTGGAAGGGCTGCTGGAGGTATATCATGCGACTGATGCTTA  400

seq1  TTCTGGACACCAGGAATTCTTGCAGGCAATCTGATAGTTAGGACTGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGACACCAGGAATTCTTGCAGGCAATCTGATAGTTAGGACTGCAGT  450

seq1  ACTTGCGCTCCTCCTTTTTAAAGAAAATGATGTAAATGAGGTGGCTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCGCTCCTCCTTTTTAAAGAAAATGATGTAAATGAGGTGGCTTAAA  500

seq1  GTCTCACACAATCGCCAAATTTAATCGGAGCATCAGATAGTTTATACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACACAATCGCCAAATTTAATCGGAGCATCAGATAGTTTATACTCT  550

seq1  GGCGTTTAAGAAGATTTATGTAAATGTACAATTATAAGCCTCACGTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTTAAGAAGATTTATGTAAATGTACAATTATAAGCCTCACGTGGTG  600

seq1  GAGCAAGCTGAAGGCAGCAAAAAACATTTTCCATAGAGGCATATAAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGCTGAAGGCAGCAAAAAACATTTTCCATAGAGGCATATAAAGAA  650

seq1  ATAACAATAGCCAGTTGTAATGAATAATCTGAAGTGAACTATCTGCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATAGCCAGTTGTAATGAATAATCTGAAGTGAACTATCTGCTACA  700

seq1  TCTGGGAGGGGCACAAAAGCAGAATGTAAGAACAATTCCCTGTGTTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGGGGCACAAAAGCAGAATGTAAGAACAATTCCCTGTGTTTTGA  750

seq1  AGAAACAGGTCACAAGACTCCTGTCTCGGTTTCTTGGAGTTTTCTTACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGGTCACAAGACTCCTGTCTCGGTTTCTTGGAGTTTTCTTACAG  800

seq1  GCACTCAGAAATCTCACATGATTCTAATTTTGAGCCCTGTTCTGACCGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAGAAATCTCACATGATTCTAATTTTGAGCCCTGTTCTGACCGTT  850

seq1  ACTCTGCTGCTTCTGGTATTCACAGAGACCCACAATTATAGAAGTTGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCTGCTTCTGGTATTCACAGAGACCCACAATTATAGAAGTTGATT  900

seq1  TTTTTTTCCCTTTTTTTTCTGTTGCAGTCTTACCATTAAGTTGACAGTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCCTTTTTTTTCTGTTGCAGTCTTACCATTAAGTTGACAGTGG  950

seq1  ATGAAGAGATGGCGCAATGC-TTTTTGAAGTACATGTGTATGCACG-AGA  998
      ||||||||||||||| |||| ||||||||||||||||||||||||| |||
seq2  ATGAAGAGATGGCGC-ATGCTTTTTTGAAGTACATGTGTATGCACGAAGA  999

seq1  AAGCATATATAATGGCTGGTTTCGCTGTTGGTT-GAGGGCA-TTTGTGAA  1046
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  AAGCATATATAATGGCTGGTTTCGCTGTTGGTTGGAGGGCATTTTGTGAA  1049

seq1  AGAACTTTGCACCTCAGTTCCTGCTTCATGTGTTTGAATATGTAGAACAT  1096
      ||||| |||||||||||||||||||||||||||||| |||||||||   |
seq2  AGAAC-TTGCACCTCAGTTCCTGCTTCATGTGTTTG-ATATGTAGACATT  1097

seq1  CACGTGGG-TACAAT-CAGATAAATGTAGAAGCGAATCATTCAAGTGTGC  1144
      |||||||| |||||| ||||| ||||||| ||||||||||   ||| |||
seq2  CACGTGGGTTACAATCCAGAT-AATGTAGGAGCGAATCAT--CAGT-TGC  1143

seq1  TTAATGTGATTA-TGTGTATTGAATAACATTTGAT-AATATTTG-TTTAA  1191
       | ||||||||| ||  |||||||||||||| ||| |||||||| |||||
seq2  CT-ATGTGATTATTGGTTATTGAATAACATTGGATAAATATTTGCTTTAA  1192