BAC Information

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BAC

Clone NameB6Ng01-226F03
Chromosome14 (Build37)
Map Location 5,666,102 - 5,828,053
singlet/doubletdoublet
Overlap geneLOC100041195, LOC100041545, LOC100041565, LOC100041215
Upstream geneEG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706
Downstream geneLOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421, LOC100041817, LOC100041431, LOC100041438, LOC100041442, LOC100041848, LOC100041456, LOC100041758, LOC100041470, LOC100041804, LOC100041487, LOC100041747, LOC100041507, LOC100041836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226F03.bB6Ng01-226F03.g
ACCGA040292GA040293
length1,2011,137
definitionB6Ng01-226F03.b B6Ng01-226F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,826,806 - 5,828,053)(5,666,102 - 5,667,215)
sequence
gaattcaccattggaaaatcactaacagcactgtgaagttttctaaggtg
gacagcaggaagcctgtccttttcctaccctctccctcagcccctcttcc
ccacctgtgtaggattttgaggttgaatgtgcattgtgcactgctgctgc
aaggtagctcttccctgtggctgtgctgaagcagctggccagggaagcct
gggagctgaggctccagcctgtggattctctttcctcagactttagtctg
gaccagggagtggtgttctctcctgtggatgtgtgtatatatattattta
ctttatactttgttcacgtagttcgatgcattctcccaggcattctggat
gggcgctttagcctagacatttatttcagcatattgtcatcttgggctgc
atgcatgtcctctcttgtttctgagtcctcaccatgcccttcccagcttc
ctgttagccaaagggaatcgctctttctgaaccaaaagctctcagagcag
agctgaacctcccagaaaatgctcttctctacctaatgcgccagatgggg
gtgggcccgaaactaaacagcactgtagaggtggcctaaaggaccggaac
ccccaggcagacgtgcggatgtaaggtcctagcaatggtgctgagtgagg
gtacatgagacgagttcttctcccgggcaaagggaacttttacttagctg
gaatggtactttgtggtccgagtatgtggagggattcggggttcagagtg
caccccagaacataagaggatagctccatgcccccctttccctcaggagc
cttctcctcactcctgctgcctagaacaaggggaggaggatctccactgc
ctgagctgctgcatcatgccccttcctatctctactctattccctctgag
ccctccagaccctaggaggagtgagagggaggtcctttcgaaggcgtatc
tcaacatctgtcatctcattctggtgttggtcaatatcctgggtcagcac
accagaacatcccaaggctgggtgccaaggcgtgaagtgcacagaggacc
caagaggtctaggcaaggggaagcttgtgatccaagggtcctgggtcaag
gtgctgccccggagggatcacggagatggtgctaactagggccagggctc
agactttctggcaaagccacacttaccagtccttgggcactgctggtgtc
c
gaattcctggcaaagacaaaggctgctataggtaactgtctgtcttgctt
gggagcacatgagctgtagaattgccatctctgattttgatcctgcacag
gagactctcgagctctggttcttgctttctgccacttcacacaggagcct
ttagatttttctgttgtaaacctgtgggttgaaacactttttggggtaaa
aaaaaaggtcaaaggaccctttcacagaggttgtgtatcagacaatcctt
tatctcagacacttctattatggcttataacagtacaaaaattatagtac
ccaagtagcaatgaaaataatcttaagtttgggaggtcactgcattaaag
catccacagcatttggtaaattgagaaaccctggtcttgacagaagaact
atttgtatcatgtgaggtcttcttgacccccggggctgagtcaggatcta
tagagagctagttaccagcagacccatgtatagcaagtattccccttgtt
tctcctttccaattcatagtgcctttgcccattccttcgtgatgtttctc
cattaggatggacaggtagggacaactgtagtccacttcttctttttagg
aaacatggatccctcttagtgttgggacttttggaagtagcatgagtgtt
tctggaatttgctgttctctaatttttgctttctgagtgcagctcaccta
gatgtcctgagttcttatctaggtcttcctgagaaccagggtctggtggg
gttgatggtgtttctttataagttaataggaaaaggatagcaggggcttt
gtatgcattgggtgtttgcagaaaacctgcagagccaccttctgatggaa
ctgaaatcagctgaagaagaaggtagacatgctgaggaggcacaagaata
agaaagtgctggaagaatgaggcaactggtgctgcagtacttgtgggact
taaaaggggctcccataacgacccaataggaggaggccagtgacttccag
agtcaggaaacacaggtagaagacagtcagctttgtcaggctaaatggtt
tagcttcaattcttgcccttgtactttctatgaagaagctccatcccacc
ttaacctgtgtctttcaattcatcatccttactcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_5826806_5828053
seq2: B6Ng01-226F03.b_1_1246 (reverse)

seq1  GGACA-CAGCAGTGCCCCAGGGGCTGTGGTCAGCTGCTGGGCTCTGCCCG  49
      ||||| ||||||||||| |||     |||| || ||   |||| |||| |
seq2  GGACACCAGCAGTGCCCAAGG---ACTGGTAAG-TG--TGGCTTTGCCAG  44

seq1  AAAGTCTGAGCCCTGCCCCTAGCTAGCACCATCTTCCGTGATCCCCTCCG  99
      ||||||||||||||| |||||| |||||||||| |||||||||||  | |
seq2  AAAGTCTGAGCCCTGGCCCTAGTTAGCACCATC-TCCGTGATCCCTCCGG  93

seq1  CGCAGCACCCTGGACCCAGGACCC-TGGATCACAAGCCTCCCC-TGCCTA  147
       |||||| ||| |||||||||||| |||||||||||| ||||| ||||||
seq2  GGCAGCA-CCTTGACCCAGGACCCTTGGATCACAAGCTTCCCCTTGCCTA  142

seq1  GACCTCTTGGGTCCTCTGTGCACTTCACGCCTGGGCACCCAGCCTTGGGA  197
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GACCTCTTGGGTCCTCTGTGCACTTCACGCCTTGGCACCCAGCCTTGGGA  192

seq1  TGTTCTGGTGTTGCTGACCCAGGATA-TGACCAACACCAGAATGAGATGA  246
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  TGTTCTGGTG-TGCTGACCCAGGATATTGACCAACACCAGAATGAGATGA  241

seq1  CAGATGTTGAGATACGCC-TCG-AAGGACCTCCCTCTCACTCCTCCTAGG  294
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  CAGATGTTGAGATACGCCTTCGAAAGGACCTCCCTCTCACTCCTCCTAGG  291

seq1  GTCTGGAGGGCTCAGAGGGAATAGAGTAGAGATAGGAAGGGGCATGATGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGGGCTCAGAGGGAATAGAGTAGAGATAGGAAGGGGCATGATGC  341

seq1  AGCAGCTCAGGCAGTGGAGATCCTCCTCCCCTTGTTCTAGGCAGCAGGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTCAGGCAGTGGAGATCCTCCTCCCCTTGTTCTAGGCAGCAGGAG  391

seq1  TGAGGAGAAGGCTCCTGAGGGAAAGGGGGGCATGGAGCTAT-CTCTTATG  443
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGAGGAGAAGGCTCCTGAGGGAAAGGGGGGCATGGAGCTATCCTCTTATG  441

seq1  TTCTGGGGTGCACTCTGAACCCCGAATCCCTCCACATACTCGGACCACAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGGTGCACTCTGAACCCCGAATCCCTCCACATACTCGGACCACAA  491

seq1  AGTACCATTCCAGCTAAGTAAAAGTTCCCTTTGCCCGGGAGAAGAACTCG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCATTCCAGCTAAGTAAAAGTTCCCTTTGCCCGGGAGAAGAACTCG  541

seq1  TCTCATGTACCCTCACTCAGCACCATTGCTAGGACCTTACATCCGCACGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTACCCTCACTCAGCACCATTGCTAGGACCTTACATCCGCACGT  591

seq1  CTGCCTGGGGGTTCCGGTCCTTTAGGCCACCTCTACAGTGCTGTTTAGTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGGGGTTCCGGTCCTTTAGGCCACCTCTACAGTGCTGTTTAGTT  641

seq1  TCGGGCCCACCCCCATCTGGCGCATTAGGTAGAGAAGAGCATTTTCTGGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGCCCACCCCCATCTGGCGCATTAGGTAGAGAAGAGCATTTTCTGGG  691

seq1  AGGTTCAGCTCTGCTCTGAGAGCTTTTGGTTCAGAAAGAGCGATTCCCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAGCTCTGCTCTGAGAGCTTTTGGTTCAGAAAGAGCGATTCCCTT  741

seq1  TGGCTAACAGGAAGCTGGGAAGGGCATGGTGAGGACTCAGAAACAAGAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAACAGGAAGCTGGGAAGGGCATGGTGAGGACTCAGAAACAAGAGA  791

seq1  GGACATGCATGCAGCCCAAGATGACAATATGCTGAAATAAATGTCTAGGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGCATGCAGCCCAAGATGACAATATGCTGAAATAAATGTCTAGGC  841

seq1  TAAAGCGCCCATCCAGAATGCCTGGGAGAATGCATCGAACTACGTGAACA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCGCCCATCCAGAATGCCTGGGAGAATGCATCGAACTACGTGAACA  891

seq1  AAGTATAAAGTAAATAATATATATACACACATCCACAGGAGAGAACACCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAAGTAAATAATATATATACACACATCCACAGGAGAGAACACCA  941

seq1  CTCCCTGGTCCAGACTAAAGTCTGAGGAAAGAGAATCCACAGGCTGGAGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGTCCAGACTAAAGTCTGAGGAAAGAGAATCCACAGGCTGGAGC  991

seq1  CTCAGCTCCCAGGCTTCCCTGGCCAGCTGCTTCAGCACAGCCACAGGGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCCCAGGCTTCCCTGGCCAGCTGCTTCAGCACAGCCACAGGGAA  1041

seq1  GAGCTACCTTGCAGCAGCAGTGCACAATGCACATTCAACCTCAAAATCCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACCTTGCAGCAGCAGTGCACAATGCACATTCAACCTCAAAATCCT  1091

seq1  ACACAGGTGGGGAAGAGGGGCTGAGGGAGAGGGTAGGAAAAGGACAGGCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTGGGGAAGAGGGGCTGAGGGAGAGGGTAGGAAAAGGACAGGCT  1141

seq1  TCCTGCTGTCCACCTTAGAAAACTTCACAGTGCTGTTAGTGATTTTCCAA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTGTCCACCTTAGAAAACTTCACAGTGCTGTTAGTGATTTTCCAA  1191

seq1  TGGTGAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  1243
      ||||||||||                                        
seq2  TGGTGAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  1241

seq1  NNNNN  1248
           
seq2  NNNNN  1246

seq1: chr14_5666102_5667215
seq2: B6Ng01-226F03.g_66_1202

seq1  GAATTCCTGGCAAAGACAAAGGCTGCTATAGGTAACTGTCTGTCTTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCAAAGACAAAGGCTGCTATAGGTAACTGTCTGTCTTGCTT  50

seq1  GGGAGCACATGAGCTGTAGAATTGCCATCTCTGATTTTGATCCTGCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCACATGAGCTGTAGAATTGCCATCTCTGATTTTGATCCTGCACAG  100

seq1  GAGACTCTCGAGCTCTGGTTCTTGCTTTCTGCCACTTCACACAGGAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTCGAGCTCTGGTTCTTGCTTTCTGCCACTTCACACAGGAGCCT  150

seq1  TTAGATTTTTCTGTTGTAAACCTGTGGGTTGAAACACTTTTTGGGGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTTTCTGTTGTAAACCTGTGGGTTGAAACACTTTTTGGGGTAAA  200

seq1  AAAAAAGGTCAAAGGACCCTTTCACAGAGGTTGTGTATCAGACAATCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGTCAAAGGACCCTTTCACAGAGGTTGTGTATCAGACAATCCTT  250

seq1  TATCTCAGACACTTCTATTATGGCTTATAACAGTACAAAAATTATAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAGACACTTCTATTATGGCTTATAACAGTACAAAAATTATAGTAC  300

seq1  CCAAGTAGCAATGAAAATAATCTTAAGTTTGGGAGGTCACTGCATTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAGCAATGAAAATAATCTTAAGTTTGGGAGGTCACTGCATTAAAG  350

seq1  CATCCACAGCATTTGGTAAATTGAGAAACCCTGGTCTTGACAGAAGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACAGCATTTGGTAAATTGAGAAACCCTGGTCTTGACAGAAGAACT  400

seq1  ATTTGTATCATGTGAGGTCTTCTTGACCCCCGGGGCTGAGTCAGGATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATCATGTGAGGTCTTCTTGACCCCCGGGGCTGAGTCAGGATCTA  450

seq1  TAGAGAGCTAGTTACCAGCAGACCCATGTATAGCAAGTATTCCCCTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGCTAGTTACCAGCAGACCCATGTATAGCAAGTATTCCCCTTGTT  500

seq1  TCTCCTTTCCAATTCATAGTGCCTTTGCCCATTCCTTCGTGATGTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTCCAATTCATAGTGCCTTTGCCCATTCCTTCGTGATGTTTCTC  550

seq1  CATTAGGATGGACAGGTAGGGACAACTGTAGTCCACTTCTTCTTTTTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGATGGACAGGTAGGGACAACTGTAGTCCACTTCTTCTTTTTAGG  600

seq1  AAACATGGATCCCTCTTAGTGTTGGGACTTTTGGAAGTAGCATGAGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGATCCCTCTTAGTGTTGGGACTTTTGGAAGTAGCATGAGTGTT  650

seq1  TCTGGAATTTGCTGTTCTCTAATTTTTGCTTTCTGAGTGCAGCTCACCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATTTGCTGTTCTCTAATTTTTGCTTTCTGAGTGCAGCTCACCTA  700

seq1  GATGTCCTGAGTTCTTATCTAGGTCTTCCTGAGAACCAGGGTCTGGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCTGAGTTCTTATCTAGGTCTTCCTGAGAACCAGGGTCTGGTGGG  750

seq1  GTTGATGGTGTTTC-TTATAAGTTAATAGGAAAAGGATAGCAGGGGCTTT  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTTGATGGTGTTTCTTTATAAGTTAATAGGAAAAGGATAGCAGGGGCTTT  800

seq1  GTATGCATTGGGTGTTTGCAG-AAACCTGCAGAGCCACCTTCTGATGGAA  848
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTATGCATTGGGTGTTTGCAGAAAACCTGCAGAGCCACCTTCTGATGGAA  850

seq1  CTG-AATCAGCTGAAGAAGAAGGTAGACATGCTGAGGAGGCACAGGAATA  897
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGAAATCAGCTGAAGAAGAAGGTAGACATGCTGAGGAGGCACAAGAATA  900

seq1  AGAAAGTGCTGGAAG-ATGAGGC-ACTGGTGCTGCAGTACTTGTGGGACT  945
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  AGAAAGTGCTGGAAGAATGAGGCAACTGGTGCTGCAGTACTTGTGGGACT  950

seq1  T-AAAGGGGCT-CCATAAGGA-CCAATAGGAAGAGGCCAGTGACTTCCAG  992
      | ||||||||| |||||| || ||||||||| ||||||||||||||||||
seq2  TAAAAGGGGCTCCCATAACGACCCAATAGGAGGAGGCCAGTGACTTCCAG  1000

seq1  AGTCAGGAACAACAGGTAG-AGACAGGCAGCTTTGTCAGGCT-AATGG-T  1039
      |||||||||  |||||||| |||||| ||||||||||||||| ||||| |
seq2  AGTCAGGAAACACAGGTAGAAGACAGTCAGCTTTGTCAGGCTAAATGGTT  1050

seq1  TAGCTCCA--TC-TGCCCTTGTAACTTCTA-GACG-AGCT-CAT-CCACC  1082
      ||||| ||  || ||||||||||  ||||| || | |||| ||| |||||
seq2  TAGCTTCAATTCTTGCCCTTGTACTTTCTATGAAGAAGCTCCATCCCACC  1100

seq1  T--ACCTGTG-CTTTC-ATCCATCAT-CTTACTCATC  1114
      |  ||||||| ||||| || |||||| ||||||||||
seq2  TTAACCTGTGTCTTTCAATTCATCATCCTTACTCATC  1137