BAC Information

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BAC

Clone NameB6Ng01-226F11
Chromosome14 (Build37)2 (Build37)
Map Location 11,860,321 - 11,860,48547,340,558 - 47,341,359
singlet/doubletsingletsinglet
Overlap geneFhit
Upstream geneLOC100041974
Downstream geneLOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, Ptprg, LOC100042441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226F11.bB6Ng01-226F11.g
ACCGA040308GA040309
length982802
definitionB6Ng01-226F11.b B6Ng01-226F11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,860,321 - 11,860,485)(47,340,558 - 47,341,359)
sequence
gaattctttgtttagctctgcacctcatttttaaataggtttatttggtt
ctctggagtttaactttttgtgttctttgtatatattggatattagccct
ttataggatataggattagtaaagatcttttagcaatctgttgattgcca
ttttgtcctattgacagtgtcctttgccttgtagaagcttttcaatttta
tcaggttccatttttcttttctttttttaaaaaaaataatttttattaga
tattttcatcatttacatttcaaatgctatcctgaaagtcccctgacctg
ctctcaactcacccactcccacttcctgaccctggcattccctgtattgg
gacatataatctttgaaagagcaagggcctctcctcccaatgatggccga
cctggccatcttctgctacatatgcagctagagacacaagcttcatggtc
ccatttttcaattgctcatccttgtgcctgagccgttggtattttattca
gtaaaattaccccagtgctaatgtgttcaagatgtgctaatgtgtctttc
aaactttctcttctattagattcaccatatccagttttatgtgtaggtct
ttgatccacatggtcttgagtatgtacaaggaaataataatggattcatt
tgaattttttctacatgccaaccaccagttgaactagcaccattttttga
aaatagtgtctgctcttcaatgaatggtttaggcttctttgtcaaagatc
aagtgaccataaaggtgtaggtttaattctgagtctttgattctattcca
ttgatcaacatgtctgcctctgtaccaataccacatgttttttatctggt
atacagtaaatgcagggacaaaacgtggagcagagtctgaaggaaaggcc
atccagagatttccccacctagggatccatcccacctatagacaccaaac
cctgacactattgctgatgcctacaagtactt

gaattcataggtttaaaagctcacataaacctattagccagagttcttca
atttgagttttctctctttgacagacagtaatctaaaatccaagtttgtt
aaagaaaacttgcattaaatatttaatgatctccttgaattttgtccctt
cccagaatcaaccgccggtgagtttaacaacccaaattcttatttttcac
tttcctgaaataacaacttacttttaaaagcaataattttgttgattttg
ctaataatctgaataggtgtcatgttaagttttgagtttttcagccattt
ttaaccattgattcacaatccctttggcaatcctctgtctcccaatatat
ttacatgaaaattcgtaacagtagaaaatgagagttatgaagtaggaatg
tatataactgcatcattgtggtcaccacaccatggggagctgtattaaag
ggtcacagaattagcaaggatgagagccactgtgttgctctatagtgtct
tcattcgcttagctgaatgtcctgaatatcattccacttaggagcatata
acggtgctttcatttttgctttttgttttatgttatttgtttttttttca
ttttttcagtatgatttaaattggaataaaattatacccttttcctcttt
cttgtctattccagttacacagcttcaaagccctctcatactctacaact
ctcaatttaataacctcttttgtatgtttattattgttatatcagtgttt
ctctatccatttctctctctctctctctctctctctctctctctctctct
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_11860321_11860485
seq2: B6Ng01-226F11.b_268_369

seq1  TTTTTAAAAAAAATAAGCCAACTTTAAAGGAACCTCCCAATAGTTTGTTG  50
      ||||||||||||||||                                  
seq2  TTTTTAAAAAAAATAA----------------------------------  16

seq1  TTTTTTTCTCTTTCTTTTAAAAATTAGGTATTTTCTTCATTTACATTTCA  100
        |||||               ||||| ||||||| ||||||||||||||
seq2  --TTTTT---------------ATTAGATATTTTCATCATTTACATTTCA  49

seq1  AATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCTCACTCCCCTACAC  150
      ||||||||||  |||||||||  |  |||    | ||||       || |
seq2  AATGCTATCCTGAAAGTCCCC--TGACCT---GCTCTCA-------ACTC  87

seq1  ACCCACTCCCACTTC  165
      |||||||||||||||
seq2  ACCCACTCCCACTTC  102


seq1: chr2_47340558_47341359
seq2: B6Ng01-226F11.g_67_868 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATGGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATGGATAG  50

seq1  AGAAACACTGATATAACAATAATAAACATACAAAAGAGGTTATTAAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACTGATATAACAATAATAAACATACAAAAGAGGTTATTAAATTG  100

seq1  AGAGTTGTAGAGTATGAGAGGGCTTTGAAGCTGTGTAACTGGAATAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGTAGAGTATGAGAGGGCTTTGAAGCTGTGTAACTGGAATAGACA  150

seq1  AGAAAGAGGAAAAGGGTATAATTTTATTCCAATTTAAATCATACTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGAAAAGGGTATAATTTTATTCCAATTTAAATCATACTGAAAA  200

seq1  AATGAAAAAAAAACAAATAACATAAAACAAAAAGCAAAAATGAAAGCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAAAAAACAAATAACATAAAACAAAAAGCAAAAATGAAAGCACC  250

seq1  GTTATATGCTCCTAAGTGGAATGATATTCAGGACATTCAGCTAAGCGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATGCTCCTAAGTGGAATGATATTCAGGACATTCAGCTAAGCGAAT  300

seq1  GAAGACACTATAGAGCAACACAGTGGCTCTCATCCTTGCTAATTCTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACACTATAGAGCAACACAGTGGCTCTCATCCTTGCTAATTCTGTGA  350

seq1  CCCTTTAATACAGCTCCCCATGGTGTGGTGACCACAATGATGCAGTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAATACAGCTCCCCATGGTGTGGTGACCACAATGATGCAGTTATA  400

seq1  TACATTCCTACTTCATAACTCTCATTTTCTACTGTTACGAATTTTCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCTACTTCATAACTCTCATTTTCTACTGTTACGAATTTTCATGT  450

seq1  AAATATATTGGGAGACAGAGGATTGCCAAAGGGATTGTGAATCAATGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTGGGAGACAGAGGATTGCCAAAGGGATTGTGAATCAATGGTT  500

seq1  AAAAATGGCTGAAAAACTCAAAACTTAACATGACACCTATTCAGATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGCTGAAAAACTCAAAACTTAACATGACACCTATTCAGATTATT  550

seq1  AGCAAAATCAACAAAATTATTGCTTTTAAAAGTAAGTTGTTATTTCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATCAACAAAATTATTGCTTTTAAAAGTAAGTTGTTATTTCAGGA  600

seq1  AAGTGAAAAATAAGAATTTGGGTTGTTAAACTCACCGGCGGTTGATTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAAATAAGAATTTGGGTTGTTAAACTCACCGGCGGTTGATTCTG  650

seq1  GGAAGGGACAAAATTCAAGGAGATCATTAAATATTTAATGCAAGTTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGACAAAATTCAAGGAGATCATTAAATATTTAATGCAAGTTTTCT  700

seq1  TTAACAAACTTGGATTTTAGATTACTGTCTGTCAAAGAGAGAAAACTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAACTTGGATTTTAGATTACTGTCTGTCAAAGAGAGAAAACTCAA  750

seq1  ATTGAAGAACTCTGGCTAATAGGTTTATGTGAGCTTTTAAACCTATGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGAACTCTGGCTAATAGGTTTATGTGAGCTTTTAAACCTATGAAT  800

seq1  TC  802
      ||
seq2  TC  802


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