BAC Information

Click to search

BAC

Clone NameB6Ng01-227A10
Chromosome14 (Build37)
Map Location 86,315,864 - 86,456,540
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668603
Downstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227A10.bB6Ng01-227A10.g
ACCGA040803GA040804
length1,1161,094
definitionB6Ng01-227A10.b B6Ng01-227A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,315,864 - 86,316,985)(86,455,435 - 86,456,540)
sequence
gaattccttatgaacgctttcatctgtacaggaagccaaggatgaatgcc
aaaagggaagaaaagaagaaaagctcctataagacaccagcatgtgtaga
ttcactcagttgcacctcaaatatctccaaataaatattctttttctatg
catcacataaagtaagataaaaggtaaattgcctggagctagctgcaaag
tcaataaatatttttgcatactcagcctctttttgtgaaccttgcctttc
ctcgaaagaactttcatttcctgagggatgagtcattgtagagtcgggtt
tattgattgtaagtgagaaactagctaaagaatttcatcttggtttcttg
gtagtcacagggaaagagggaaaagccacgtgaaaagaaaaactcatgat
agggagttaaaaatcctttctttaaagaatgtaagctccaacacattata
acaacaacaaaaaaataattgggattaattagctagctgacattactaaa
agaatcatgattgcctatcttcaggcattgcttgatccagattcttaagc
agtatcaaagttcaaatatcttgtttctataagctttctttcctcacatg
ttttattttcttatgtttgtctgaagcctgggaacttttagagattttaa
attcatcagcttaaaaattctattagggaactggatagatgactaactag
gtaagaatactctctagtcttacagaggagctagattcagtcccgaaaat
tcacatgagcacaaacaactgctaaaaactccacttacaggtgatatcac
tccgtcttctgactgtaaatgcaggaacctgattgatgtggtatagattc
atagatgaaagtagaatactcaaacatacatagaaacacataagtgaacc
ttttaaaaagaaagacattaagaaaggcatgaagaatttactttataaat
cccaaatcctagaattgaatctccatgaataggcatggaaatctttgctc
tcttcagccattattctagaggggatagagcagcatatgagacctgtgac
agcaaatgatggtagagaatcagattgtagagtcacattcagtaacgggc
aaagctcagaacagaa

gaattcagtacaaaatgtgatgcttcagtaatcataaaatatagatgtga
tgtccattcaaattagagaacagttcctctagacctttgttttccaatag
ttattgaaatatatcagaaacaaaatattataactttagagctgtaaaaa
aggtttccattcttgatgctttcctaaaactttccaagatcaaatctcaa
aattctattacgtaagtcagttaaaatacccatcacacctggttgaaaat
gaataagaataatatccatgaatttcctcagggaattagggtaaatttat
tacaagaggagaatctgattgtggccagtctctcttaaatgtattccaat
agttgtgacaataacacaaagcaaaacaggtttaccaggaattatatttt
gtaaacttttatgcagctaaaaaataatcctatcaaataaattcagaatt
gaaaagaaatagctttgaaatgtggatagatatccatagaaaataacaag
aattaccagaaattaagtaagttacctttgaatatgaaagccaattatca
actttttctctttgatcttttctgtttttcttttctttttcttcttttct
ttctttttgttttatgatttcattttatttaatttttaattccttcaatc
ctaaaacctgctgaagctttcataggctcataaactctagaaactctaaa
tactctattggagctggacattcctgtgcagaaaataattctctggattg
aacaaaatatagtgaataaaatataggaatcccttgctatctatgttcct
attattgcatagtggagtatgtagttccagagatctaatgagtacattct
cattccatacagttggtacgctctactcgcaggtttttttggtagtcagt
ctgctgtacctaggtgtgagaaagtgcctacatcccaattctttaatcag
cgaaaggtctgcacaggagactggagagaaaataacagagggatttactt
atgccagagcagcagtgttaaattcatgaatattaaaaaaaaaaattagc
tgtagtcagtgcagaggcagattactgcactcagaagactataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_86315864_86316985
seq2: B6Ng01-227A10.b_46_1161

seq1  GAATTCCTTATGAACGCTTTCATCTGTACAGGAAGCCAAGGATGAATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATGAACGCTTTCATCTGTACAGGAAGCCAAGGATGAATGCC  50

seq1  AAAAGGGAAGAAAAGAAGAAAAGCTCCTATAAGACACCAGCATGTGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAAGAAAAGAAGAAAAGCTCCTATAAGACACCAGCATGTGTAGA  100

seq1  TTCACTCAGTTGCACCTCAAATATCTCCAAATAAATATTCTTTTTCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCAGTTGCACCTCAAATATCTCCAAATAAATATTCTTTTTCTATG  150

seq1  CATCACATAAAGTAAGATAAAAGGTAAATTGCCTGGAGCTAGCTGCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATAAAGTAAGATAAAAGGTAAATTGCCTGGAGCTAGCTGCAAAG  200

seq1  TCAATAAATATTTTTGCATACTCAGCCTCTTTTTGTGAACCTTGCCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAATATTTTTGCATACTCAGCCTCTTTTTGTGAACCTTGCCTTTC  250

seq1  CTCGAAAGAACTTTCATTTCCTGAGGGATGAGTCATTGTAGAGTCGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAAGAACTTTCATTTCCTGAGGGATGAGTCATTGTAGAGTCGGGTT  300

seq1  TATTGATTGTAAGTGAGAAACTAGCTAAAGAATTTCATCTTGGTTTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTGTAAGTGAGAAACTAGCTAAAGAATTTCATCTTGGTTTCTTG  350

seq1  GTAGTCACAGGGAAAGAGGGAAAAGCCACGTGAAAAGAAAAACTCATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCACAGGGAAAGAGGGAAAAGCCACGTGAAAAGAAAAACTCATGAT  400

seq1  AGGGAGTTAAAAATCCTTTCTTTAAAGAATGTAAGCTCCAACACATTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTAAAAATCCTTTCTTTAAAGAATGTAAGCTCCAACACATTATA  450

seq1  ACAACAACAAAAAAATAATTGGGATTAATTAGCTAGCTGACATTACTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAAAAAAATAATTGGGATTAATTAGCTAGCTGACATTACTAAA  500

seq1  AGAATCATGATTGCCTATCTTCAGGCATTGCTTGATCCAGATTCTTAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATGATTGCCTATCTTCAGGCATTGCTTGATCCAGATTCTTAAGC  550

seq1  AGTATCAAAGTTCAAATATCTTGTTTCTATAAGCTTTCTTTCCTCACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAAAGTTCAAATATCTTGTTTCTATAAGCTTTCTTTCCTCACATG  600

seq1  TTTTATTTTCTTATGTTTGTCTGAAGCCTGGGAACTTTTAGAGATTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTCTTATGTTTGTCTGAAGCCTGGGAACTTTTAGAGATTTTAA  650

seq1  ATTCATCAGCTTAAAAATTCTATTAGGGAACTGGATAGATGACTAACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAGCTTAAAAATTCTATTAGGGAACTGGATAGATGACTAACTAG  700

seq1  GTAAGAATACTCTCTAGTCTTACAGAGGAGCTAGATTCAGTCCCGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATACTCTCTAGTCTTACAGAGGAGCTAGATTCAGTCCCGAAAAT  750

seq1  TCACATGAGCACAAACAACTGCTAAAAACTCCACTTACAGGTGATATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGAGCACAAACAACTGCTAAAAACTCCACTTACAGGTGATATCAC  800

seq1  TCCGTCTTCTGACTGTAAATGCAGGAACCTGATTGATGTGGTATAGATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCTTCTGACTGTAAATGCAGGAACCTGATTGATGTGGTATAGATTC  850

seq1  ATAGATGAAAGTAGAATACTCAAACATACATAGAAACACATAAGTGAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGAAAGTAGAATACTCAAACATACATAGAAACACATAAGTGAACC  900

seq1  TTTTAAAAAGAAAGACATTAAGAAAGGCATGAAGAATTTACTTTATAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAGAAAGACATTAAGAAAGGCATGAAGAATTTACTTTATAAAT  950

seq1  CCCAAATCCTAGAATTGAATCTCCATGAATAGGCATGG-AATCTTTGCTC  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCCAAATCCTAGAATTGAATCTCCATGAATAGGCATGGAAATCTTTGCTC  1000

seq1  TCCTTCAGCCATTATTCTAGAGGGGATAGAGCAGCCATATTGAGACCTGT  1049
      | |||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  T-CTTCAGCCATTATTCTAGAGGGGATAGAGCAG-CATA-TGAGACCTGT  1047

seq1  GACAGCAAATGATGGTAGAGAATCAGGATTGTAGAGTTCACATTTCAGTA  1099
      ||||||||||||||||||||||||| |||||||||| ||||| |||||||
seq2  GACAGCAAATGATGGTAGAGAATCA-GATTGTAGAG-TCACA-TTCAGTA  1094

seq1  ACGGGAAAGGCTCCAGAACAGAA  1122
      ||||| || ||| ||||||||||
seq2  ACGGGCAAAGCT-CAGAACAGAA  1116


seq1: chr14_86455435_86456540
seq2: B6Ng01-227A10.g_65_1158 (reverse)

seq1  TTATAGTC-TCTGAGTGGCAGTAATTCCTGCTTCTGCCACTGACTTACAG  49
      |||||||| ||||||| ||||||||  |||| |||| ||||||| |||||
seq2  TTATAGTCTTCTGAGT-GCAGTAAT--CTGCCTCTG-CACTGAC-TACAG  45

seq1  CTTAAATTTTTTTTTTTAAATATCATGAAATTTAACACTGCTGCTTCTGG  99
      ||  |||||||||||||||   ||||| |||||||||||||||| |||||
seq2  CT--AATTTTTTTTTTTAATATTCATG-AATTTAACACTGCTGC-TCTGG  91

seq1  CATAAAGTTAATCCCCTCTGTTATTTTCTCTTCCAGTCTTCCTGTTGCAG  149
      ||| |||| ||| ||||||||||||||||| ||||||| ||||| |||||
seq2  CAT-AAGTAAAT-CCCTCTGTTATTTTCTC-TCCAGTC-TCCTG-TGCAG  136

seq1  ACC-TTCGCTGATTAAAGAATTGGGATGTAGGCACTTTCTCACACCTAGG  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCGCTGATTAAAGAATTGGGATGTAGGCACTTTCTCACACCTAGG  186

seq1  TACAGCAGACTGACTACCAAAAAAACCTGCGAGTAGAGCGTACCAACTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAGACTGACTACCAAAAAAACCTGCGAGTAGAGCGTACCAACTGT  236

seq1  ATGGAATGAGAATGTACTCATTAGATCTCTGGAACTACATACTCCACTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGAGAATGTACTCATTAGATCTCTGGAACTACATACTCCACTAT  286

seq1  GCAATAATAGGAACATAGATAGCAAGGGATTCCTATATTTTATTCACTAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAATAGGAACATAGATAGCAAGGGATTCCTATATTTTATTCACTAT  336

seq1  ATTTTGTTCAATCCAGAGAATTATTTTCTGCACAGGAATGTCCAGCTCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTCAATCCAGAGAATTATTTTCTGCACAGGAATGTCCAGCTCCA  386

seq1  ATAGAGTATTTAGAGTTTCTAGAGTTTATGAGCCTATGAAAGCTTCAGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTATTTAGAGTTTCTAGAGTTTATGAGCCTATGAAAGCTTCAGCA  436

seq1  GGTTTTAGGATTGAAGGAATTAAAAATTAAATAAAATGAAATCATAAAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAGGATTGAAGGAATTAAAAATTAAATAAAATGAAATCATAAAAC  486

seq1  AAAAAGAAAGAAAAGAAGAAAAAGAAAAGAAAAACAGAAAAGATCAAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGAAAAGAAGAAAAAGAAAAGAAAAACAGAAAAGATCAAAGA  536

seq1  GAAAAAGTTGATAATTGGCTTTCATATTCAAAGGTAACTTACTTAATTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTTGATAATTGGCTTTCATATTCAAAGGTAACTTACTTAATTTC  586

seq1  TGGTAATTCTTGTTATTTTCTATGGATATCTATCCACATTTCAAAGCTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTCTTGTTATTTTCTATGGATATCTATCCACATTTCAAAGCTAT  636

seq1  TTCTTTTCAATTCTGAATTTATTTGATAGGATTATTTTTTAGCTGCATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCAATTCTGAATTTATTTGATAGGATTATTTTTTAGCTGCATAA  686

seq1  AAGTTTACAAAATATAATTCCTGGTAAACCTGTTTTGCTTTGTGTTATTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTACAAAATATAATTCCTGGTAAACCTGTTTTGCTTTGTGTTATTG  736

seq1  TCACAACTATTGGAATACATTTAAGAGAGACTGGCCACAATCAGATTCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACTATTGGAATACATTTAAGAGAGACTGGCCACAATCAGATTCTC  786

seq1  CTCTTGTAATAAATTTACCCTAATTCCCTGAGGAAATTCATGGATATTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTAATAAATTTACCCTAATTCCCTGAGGAAATTCATGGATATTAT  836

seq1  TCTTATTCATTTTCAACCAGGTGTGATGGGTATTTTAACTGACTTACGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCATTTTCAACCAGGTGTGATGGGTATTTTAACTGACTTACGTA  886

seq1  ATAGAATTTTGAGATTTGATCTTGGAAAGTTTTAGGAAAGCATCAAGAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTTTGAGATTTGATCTTGGAAAGTTTTAGGAAAGCATCAAGAAT  936

seq1  GGAAACCTTTTTTACAGCTCTAAAGTTATAATATTTTGTTTCTGATATAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTTTTTTACAGCTCTAAAGTTATAATATTTTGTTTCTGATATAT  986

seq1  TTCAATAACTATTGGAAAACAAAGGTCTAGAGGAACTGTTCTCTAATTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAACTATTGGAAAACAAAGGTCTAGAGGAACTGTTCTCTAATTTG  1036

seq1  AATGGACATCACATCTATATTTTATGATTACTGAAGCATCACATTTTGTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACATCACATCTATATTTTATGATTACTGAAGCATCACATTTTGTA  1086

seq1  CTGAATTC  1106
      ||||||||
seq2  CTGAATTC  1094


| Home | SequenceCutter | Blast | Download |