BAC Information

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BAC

Clone NameB6Ng01-227D11
Chromosome14 (Build37)
Map Location 103,488,432 - 103,596,024
singlet/doubletdoublet
Overlap geneFbxl3, LOC100043441, Phr1
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5
Downstream geneLOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227D11.bB6Ng01-227D11.g
ACCGA040944GA040945
length5061,135
definitionB6Ng01-227D11.b B6Ng01-227D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,595,513 - 103,596,024)(103,488,432 - 103,489,543)
sequence
tagtcaccctcagaattcaaattagctgtaacttaatgtcgttttttgat
atcttccagataacaattttcagtattttctaagttgaaaattgtttaat
agtatatgtaaacatcagaaacttcatacatttttgtgtatgtctagagg
atttttataaattacttcccaggaaaacacttgcaactatcactgaatta
gaaatgaagatactaagccgggcgtggtggcgcacgccttcaatcccagc
acttgggaggcagaggcaggcggatttctgagttcgaggacagccagggc
tacacagagaaaccctgtctcaaaaaacaaacaaaaaagatactggttta
gcattttgttcaatacaagtttagtttatttgacttaatttcatgttctc
ttgtttttaattcttttagatggcttccgcctgattcctatgctgaccct
cagaaaacttcgttgattctgaataaggatgatattcgctgtggctggcc
caccac
gaattcatttacaagttcattagcagaactattaaataaacaaatttctc
aatttgagaaacaatgtctggtaacaacatgacctacctgctggagagac
gtgaggacagctgctcattttcaacagcttgagtgtgtcgctgttgttgg
ccacgaggactttaagggatgggtcatcgactggggtgtcgtctatctta
agtgaggacagggacttggagtttacaaacacaactgtcagtgcagagat
aaagtgagactgaaagacaaaagattaaaacagtttcagttcttcagaaa
tgacatgttacaaggtttccttaccgtgcatgtctgtctgcaccctaaag
aatcgcaaaactgttaaaaggcagcaccctgcatgacgttactgaagtag
agttaaagaggagagtaatcgccatctctgagaaaaagcctgtggtacct
gtggaagagagaaagggtcacgtcaagcctcagaatatgcctaaatccca
gcagcctcagaggccacagagggagcccggcctacgagtctctcacgcac
ctcaccataactggaagctaatgtcatgtatgctgtatcacattaaaaaa
aaagcaccaacctagaaactactgggcaaacatgaagattgaagtcagtc
aactgaaaggctgtaactaactggaccatagaagcatatacgaagtcttt
aaaacaaccagatccattgaaaaaaaaaacaaaacaaaacaaaacaaaaa
aaaacacccaaatttaaaacattggatctcttaaagagatttttaagtct
ggattttaatgtattttacctataatgtactgatcacagatctaataaaa
aggaattctacagaaacaagaattacagcatattttaaagcacacaactt
tgaatcagagctgagataagctatactcaatagggccaaataatttcagg
gaggaaaagaaagaccaagctttcatcacaccatctacagccaccatcct
tcattctaacaggctacctttgtaattcctccacaggcagtggttcagag
gaagccagtctattggtaaacagaaataacccaagtattaaggacatact
acctcccaggttaaattccttaactggtttcttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_103595513_103596024
seq2: B6Ng01-227D11.b_44_555 (reverse)

seq1  GTGGTGGGCCAGCCACAGCGAATATCATCCTTATTCAGAATCAACGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGCCAGCCACAGCGAATATCATCCTTATTCAGAATCAACGAAGT  50

seq1  TTTCTGAGGGTCAGCATAGGAATCTGGCTGAAGCCATCTAAAAGAATTAA  100
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  TTTCTGAGGGTCAGCATAGGAATCAGGCGGAAGCCATCTAAAAGAATTAA  100

seq1  AAACAAGAGAACATGAAATTAAGTCAAATAAACTAAACTTGTATTGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAGAACATGAAATTAAGTCAAATAAACTAAACTTGTATTGAACA  150

seq1  AAATGCTAAACCAGTATCTTTTTTGTTTGTTTTTTGAGACAGGGTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTAAACCAGTATCTTTTTTGTTTGTTTTTTGAGACAGGGTTTCTC  200

seq1  TGTGTAGCCCTGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCCTGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTC  250

seq1  CCAAGTGCTGGGATTGAAGGCGTGCGCCACCACGCCCGGCTTAGTATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTGGGATTGAAGGCGTGCGCCACCACGCCCGGCTTAGTATCTT  300

seq1  CATTTCTAATTCAGTGATAGTTGCAAGTGTTTTCCTGGGAAGTAATTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAATTCAGTGATAGTTGCAAGTGTTTTCCTGGGAAGTAATTTAT  350

seq1  AAAAATCCTCTAGACATACACAAAAATGTATGAAGTTTCTGATGTTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCTCTAGACATACACAAAAATGTATGAAGTTTCTGATGTTTACA  400

seq1  TATACTATTAAACAATTTTCAACTTAGAAAATACTGAAAATTGTTATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTATTAAACAATTTTCAACTTAGAAAATACTGAAAATTGTTATCTG  450

seq1  GAAGATATCAAAAAACGACATTAAGTTACAGCTAATTTGAATTCTGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATCAAAAAACGACATTAAGTTACAGCTAATTTGAATTCTGAGGG  500

seq1  TGACTAGAATTC  512
      ||||||||||||
seq2  TGACTAGAATTC  512

seq1: chr14_103488432_103489543
seq2: B6Ng01-227D11.g_68_1202

seq1  GAATTCATTTACAAGTTCATTAGCAGAACTATTAAATAAACAAATTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTACAAGTTCATTAGCAGAACTATTAAATAAACAAATTTCTC  50

seq1  AATTTGAGAAACAATGTCTGGTAACAACATGACCTACCTGCTGGAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGAAACAATGTCTGGTAACAACATGACCTACCTGCTGGAGAGAC  100

seq1  GTGAGGACAGCTGCTCATTTTCAACAGCTTGAGTGTGTCGCTGTTGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGACAGCTGCTCATTTTCAACAGCTTGAGTGTGTCGCTGTTGTTGG  150

seq1  CCACGAGGACTTTAAGGGATGGGTCATCGACTGGGGTGTCGTCTATCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGAGGACTTTAAGGGATGGGTCATCGACTGGGGTGTCGTCTATCTTA  200

seq1  AGTGAGGACAGGGACTTGGAGTTTACAAACACAACTGTCAGTGCAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGACAGGGACTTGGAGTTTACAAACACAACTGTCAGTGCAGAGAT  250

seq1  AAAGTGAGACTGAAAGACAAAAGATTAAAACAGTTTCAGTTCTTCAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGACTGAAAGACAAAAGATTAAAACAGTTTCAGTTCTTCAGAAA  300

seq1  TGACATGTTACAAGGTTTCCTTACCGTGCATGTCTGTCTGCACCCTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTTACAAGGTTTCCTTACCGTGCATGTCTGTCTGCACCCTAAAG  350

seq1  AATCGCAAAACTGTTAAAAGGCAGCACCCTGCATGACGTTACTGAAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCAAAACTGTTAAAAGGCAGCACCCTGCATGACGTTACTGAAGTAG  400

seq1  AGTTAAAGAGGAGAGTAATCGCCATCTCTGAGAAAAAGCCTGTGGTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGAGGAGAGTAATCGCCATCTCTGAGAAAAAGCCTGTGGTACCT  450

seq1  GTGGAAGAGAGAAAGGGTCACGTCAAGCCTCAGAATATGCCTAAATCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGAGAGAAAGGGTCACGTCAAGCCTCAGAATATGCCTAAATCCCA  500

seq1  GCAGCCTCAGAGGCCACAGAGGGAGCCCGGCCTACGAGTCTCTCACGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTCAGAGGCCACAGAGGGAGCCCGGCCTACGAGTCTCTCACGCAC  550

seq1  CTCACCATAACTGGAAGCTAATGTCATGTATGCTGTATCACATTAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATAACTGGAAGCTAATGTCATGTATGCTGTATCACATTAAAAAA  600

seq1  AAAGCACCAACCTAGAAACTACTGGGCAAACATGAAGATTGAAGTCAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACCAACCTAGAAACTACTGGGCAAACATGAAGATTGAAGTCAGTC  650

seq1  AACTGAAAGGCTGTAACTAACTGGACCATAGAAGCATATACGAAGTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAGGCTGTAACTAACTGGACCATAGAAGCATATACGAAGTCTTT  700

seq1  AAAACAACCAGATCCATTGAAAAAAAAAACAAAACAAAACAAAACAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACCAGATCCATTGAAAAAAAAAACAAAACAAAACAAAACAAAAA  750

seq1  AAAACACCCAAATTTAAAACATTGGATCTCTTAAAGAGATTTTTAAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCCAAATTTAAAACATTGGATCTCTTAAAGAGATTTTTAAGTCT  800

seq1  GGATTTTAATGTATTTTACCTATAATGTACTGATCACAGATCTAAT-AAA  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGATTTTAATGTATTTTACCTATAATGTACTGATCACAGATCTAATAAAA  850

seq1  AGGAATTCTACAGAAACAAGAATTACAGCATA-TTTAAAGCACACAACTT  898
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGAATTCTACAGAAACAAGAATTACAGCATATTTTAAAGCACACAACTT  900

seq1  TGAATCAGAGCTGAGATAAGCTATACTCAATAGG--CAAATAA-TTCAGG  945
      ||||||||||||||||||||||||||||||||||  ||||||| ||||||
seq2  TGAATCAGAGCTGAGATAAGCTATACTCAATAGGGCCAAATAATTTCAGG  950

seq1  GAAGAAAAGAAAGACCAAGC-TTCAACACA-CATCTACAG-CACCATCC-  991
      || ||||||||||||||||| |||| |||| ||||||||| |||||||| 
seq2  GAGGAAAAGAAAGACCAAGCTTTCATCACACCATCTACAGCCACCATCCT  1000

seq1  TCATCCT-ACA-GCTACCTTTGTAAATTCTCCACA-GCAGTG--TCAGAG  1036
      |||| || ||| ||||||||||||| | ||||||| ||||||  ||||||
seq2  TCATTCTAACAGGCTACCTTTGTAATTCCTCCACAGGCAGTGGTTCAGAG  1050

seq1  GAAG-CAGCC--ATGGT-AACAGA---CAACCAAGTA-TAAGGACATACT  1078
      |||| ||| |   |||| ||||||    | ||||||| ||||||||||||
seq2  GAAGCCAGTCTATTGGTAAACAGAAATAACCCAAGTATTAAGGACATACT  1100

seq1  ACCT-CCAGGTCACAATCCTTAACTTGTTTCTTTA  1112
      |||| |||||| | | ||||||||| |||||||||
seq2  ACCTCCCAGGTTAAATTCCTTAACTGGTTTCTTTA  1135