BAC Information

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BAC

Clone NameB6Ng01-227D22
Chromosome14 (Build37)
Map Location 58,179,174 - 58,302,028
singlet/doubletdoublet
Overlap geneN6amt2, Xpo4
Upstream geneCenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d
Downstream geneLats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227D22.bB6Ng01-227D22.g
ACCGA040966GA040967
length8591,053
definitionB6Ng01-227D22.b B6Ng01-227D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,179,174 - 58,180,035)(58,300,974 - 58,302,028)
sequence
gaattctttaaatcagcaacattttctgactaagaaaccaggatgcttat
gtgtttcccattcagcttgcacagccgtggctgaatattaacttgtaaag
acgagcttcacaatgcttccgaagtcagagtgtgcatatgcacttccatg
aatgcataaattcatgtctgcatccagatggattctccatggacggccgg
aggaacactcctgggcaggggacattatggagcctgaccccaccacatca
cagaggcaggggacggctgagtcacaggagctgcctccagggaggctgca
aacgacccttcctcgtcccataccaccagtggcctacggtttggttttcc
atgacattccagaagaatatcattctattttctttttcctttctctcctt
cccctactcaagaacaattgatccttttaatcctgcctccaaagtggcaa
accaaagccctatttctgtactaaaggcacacagctttatgagcaaatca
cctctccccccagacttctagatttacaatgaaaattaagcctcttaccc
cacatctccttgcttttgggccccatccctcagaacctatcatcttcaat
tcctggttttgtcacccttttgccccccagctctgtcactatgcttaggg
tcagtctccaatccatctgttcctacagcatgcactttgctccctcacac
aatcctctcccttcatctcctgaggcagttagaatccacattttggataa
ctggaaccagtagtgttgagccacataaaatactaagagtatggtttttt
ccagtgtgattactggtttgtcctagttaatatacatgcatgattaccac
cctccctcc
gaattcaataatcaaaaatggggtagaaacccctggccgagacttaaaca
ctgaggcgtccttcctgccctaatgttcagtgtctttttgcttccttttc
ttttctcttttctatttttccctttctttccttttctttttactgtcttg
tcctatcctgtcctgtccttccttccctccctccttccgtctttggagat
aaaaattaacctgtgtagcccttggtgtcctggcctcaaactcagaagtc
cacctgcctctgcctctgccccccaagtgctgggacaaaaggaatgcgct
accaccagccggcttaatttttaatttttgagggtttttgtttttgtttt
ttttattttggttttgggggtttggagccagagtttctctatgtagccct
ggctgtcctagaactcactcacaacaggctggtgttgaactcaagagatt
cgtttgcatctgcctcccaaatgctgggattaaaggtgagtgtccccact
atccagcttgatttccagtttctaagaggtgtcttctcaagaataaatat
tttcaattttgatggtggatatttttctttgcaatactggctctatgact
aaaccatgttcccattttctgaggtaagacccctcgcagcccaggcagcc
ttcagtctgatcctcctaagctgggattaaagctgtgcatgccaggatgt
gtctaataactgatttcttcagttgcttgttcttggtgctgtgcctaaga
agcttgtacttaatccaacatcaggaaaacagcactcctatatttttctc
caagtattttctaatttaaccccaactgttgggcagatctgtgatccatt
ttgaatatttacggggtgaggaggctctaatttcataaagcttgagctga
ccagagctattttgtccaaaagactattttcttttaacttttgctgtaga
atattttgtttgttggttgttggttgttgggaaccaggttctctggtagt
cctggctgtcctggacctacatcgtaaaccaggctggcctcgaaactcag
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_58179174_58180035
seq2: B6Ng01-227D22.b_43_901

seq1  GAATTCTTTAAATCAGCAACATTTTCTGACTAAGAAACCAGGATGCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAATCAGCAACATTTTCTGACTAAGAAACCAGGATGCTTAT  50

seq1  GTGTTTCCCATTCAGCTTGCACAGCCGTGGCTGAATATTAACTTGTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCCCATTCAGCTTGCACAGCCGTGGCTGAATATTAACTTGTAAAG  100

seq1  ACGAGCTTCACAATGCTTCCGAAGTCAGAGTGTGCATATGCACTTCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCTTCACAATGCTTCCGAAGTCAGAGTGTGCATATGCACTTCCATG  150

seq1  AATGCATAAATTCATGTCTGCATCCAGATGGATTCTCCATGGACGGCCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATAAATTCATGTCTGCATCCAGATGGATTCTCCATGGACGGCCGG  200

seq1  AGGAACACTCCTGGGCAGGGGACATTATGGAGCCTGACCCCACCACATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACTCCTGGGCAGGGGACATTATGGAGCCTGACCCCACCACATCA  250

seq1  CAGAGGCAGGGGACGGCTGAGTCACAGGAGCTGCCTCCAGGGAGGCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGGGACGGCTGAGTCACAGGAGCTGCCTCCAGGGAGGCTGCA  300

seq1  AACGACCCTTCCTCGTCCCATACCACCAGTGGCCTACGGTTTGGTTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACCCTTCCTCGTCCCATACCACCAGTGGCCTACGGTTTGGTTTTCC  350

seq1  ATGACATTCCAGAAGAATATCATTCTATTTTCTTTTTCCTTTCTCTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTCCAGAAGAATATCATTCTATTTTCTTTTTCCTTTCTCTCCTT  400

seq1  CCCCTACTCAAGAACAATTGATCCTTTTAATCCTGCCTCCAAAGTGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACTCAAGAACAATTGATCCTTTTAATCCTGCCTCCAAAGTGGCAA  450

seq1  ACCAAAGCCCTATTTCTGTACTAAAGGCACACAGCTTTATGAGCAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGCCCTATTTCTGTACTAAAGGCACACAGCTTTATGAGCAAATCA  500

seq1  CCTCTCCCCCCAGACTTCTAGATTTACAATGAAAATTAAGCCTCTTACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCCCCAGACTTCTAGATTTACAATGAAAATTAAGCCTCTTACCC  550

seq1  CACATCTCCTTGCTTTTGGGCCCCATCCCTCAGAACCTATCATCTTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCCTTGCTTTTGGGCCCCATCCCTCAGAACCTATCATCTTCAAT  600

seq1  TCCTGGTTTTGTCACCCTTTTGCCCCCCAGCTCTGTCACTATGCTTAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTTTGTCACCCTTTTGCCCCCCAGCTCTGTCACTATGCTTAGGG  650

seq1  TCAGTCTCCAATCCATCTGTTCCTACAGCATGCACTTTGCTCCCTCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCCAATCCATCTGTTCCTACAGCATGCACTTTGCTCCCTCACAC  700

seq1  AATCCTCTCCCTTCATCTCCTGAGGCAGTTAGAATCCACATTTTGGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTCCCTTCATCTCCTGAGGCAGTTAGAATCCACATTTTGGATAA  750

seq1  CTGGAACCAGTAGTGTTGAGCCACATAAAATACTAAGAGTATGGTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACCAGTAGTGTTGAGCCACATAAAATACTAAGAGTATGGTTTTTT  800

seq1  CCAGTGTGATTACTGGTTTGTCCTAGTTAATATACATGCATGATTACCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCAGTGTGATTACTGGTTTGTCCTAGTTAATATACATGCATGATTACCA-  849

seq1  CTCCCTCCCTCC  862
        ||||||||||
seq2  --CCCTCCCTCC  859

seq1: chr14_58300974_58302028
seq2: B6Ng01-227D22.g_66_1118 (reverse)

seq1  TTTCTGAG-TTCGAGGCCAGCCTGGTCTACGGAGTGAGTTCCAGGACAGC  49
      |||||||| ||||||||||||||||| ||||  || || |||||||||||
seq2  TTTCTGAGTTTCGAGGCCAGCCTGGTTTACGATGT-AGGTCCAGGACAGC  49

seq1  CAGGGCTACACAGAGAAACCTTGTTTCCAAACAAACAAACAAACAAACAA  99
      |||| |||| |||||||  | || |||| ||||| |||   ||| |||||
seq2  CAGGACTAC-CAGAGAA--CCTGGTTCCCAACAACCAA--CAACCAACAA  94

seq1  ACAAAATA-TCTACAGCAAAAGTTAAAAGAAAATAGTCTTTTGGAC-AAA  147
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  ACAAAATATTCTACAGCAAAAGTTAAAAGAAAATAGTCTTTTGGACAAAA  144

seq1  TAGCTCTGGTCAGCTCAAGC-TTATGAAATTAGAGCCTCCTCACCCCGTA  196
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAGCTCTGGTCAGCTCAAGCTTTATGAAATTAGAGCCTCCTCACCCCGTA  194

seq1  AATATTCAAAATGGATCACAGATCTGCCCAACAGTTGGGGTTAAATTAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCAAAATGGATCACAGATCTGCCCAACAGTTGGGGTTAAATTAGA  244

seq1  AAATACTTGGAGAAAAATATAGGAGTGCTGTTTTCCTGATGTTGGATTAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTGGAGAAAAATATAGGAGTGCTGTTTTCCTGATGTTGGATTAA  294

seq1  GTACAAGCTTCTTAGGCACAGCACCAAGAACAAGCAACTGAAGAAATCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGCTTCTTAGGCACAGCACCAAGAACAAGCAACTGAAGAAATCAG  344

seq1  TTATTAGACACATCCTGGCATGCACAGCTTTAATCCCAGCTTAGGAGGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGACACATCCTGGCATGCACAGCTTTAATCCCAGCTTAGGAGGAT  394

seq1  CAGACTGAAGGCTGCCTGGGCTGCGAGGGGTCTTACCTCAGAAAATGGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAAGGCTGCCTGGGCTGCGAGGGGTCTTACCTCAGAAAATGGGA  444

seq1  ACATGGTTTAGTCATAGAGCCAGTATTGCAAAGAAAAATATCCACCATCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTTAGTCATAGAGCCAGTATTGCAAAGAAAAATATCCACCATCA  494

seq1  AAATTGAAAATATTTATTCTTGAGAAGACACCTCTTAGAAACTGGAAATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAAATATTTATTCTTGAGAAGACACCTCTTAGAAACTGGAAATC  544

seq1  AAGCTGGATAGTGGGGACACTCACCTTTAATCCCAGCATTTGGGAGGCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGATAGTGGGGACACTCACCTTTAATCCCAGCATTTGGGAGGCAG  594

seq1  ATGCAAACGAATCTCTTGAGTTCAACACCAGCCTGTTGTGAGTGAGTTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACGAATCTCTTGAGTTCAACACCAGCCTGTTGTGAGTGAGTTCT  644

seq1  AGGACAGCCAGGGCTACATAGAGAAACTCTGGCTCCAAACCCCCAAAACC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAGGGCTACATAGAGAAACTCTGGCTCCAAACCCCCAAAACC  694

seq1  AAAATAAAAAAAACAAAAACAAAAACCCTCAAAAATTAAAAATTAAGCCG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAAAACAAAAACAAAAACCCTCAAAAATTAAAAATTAAGCCG  744

seq1  GCTGGTGGTAGCGCATTCCTTTTGTCCCAGCACTTGGGGGGCAGAGGCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGTAGCGCATTCCTTTTGTCCCAGCACTTGGGGGGCAGAGGCAG  794

seq1  AGGCAGGTGGACTTCTGAGTTTGAGGCCAGGACACCAAGGGCTACACAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGGACTTCTGAGTTTGAGGCCAGGACACCAAGGGCTACACAGG  844

seq1  TTAATTTTTATCTCCAAAGACGGAAGGAGGGAGGGAAGGAAGGACAGGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTATCTCCAAAGACGGAAGGAGGGAGGGAAGGAAGGACAGGAC  894

seq1  AGGATAGGACAAGACAGTAAAAAGAAAAGGAAAGAAAGGGAAAAATAGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGGACAAGACAGTAAAAAGAAAAGGAAAGAAAGGGAAAAATAGAA  944

seq1  AAGAGAAAAGAAAAGGAAGCAAAAAGACACTGAACATTAGGGCAGGAAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAGAAAAGGAAGCAAAAAGACACTGAACATTAGGGCAGGAAGG  994

seq1  ACGCCTCAGTGTTTAAGTCTCGGCCAGGGGTTTCTACCCCATTTTTGATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTCAGTGTTTAAGTCTCGGCCAGGGGTTTCTACCCCATTTTTGATT  1044

seq1  ATTGAATTC  1055
      |||||||||
seq2  ATTGAATTC  1053