BAC Information

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BAC

Clone NameB6Ng01-227G12
Chromosome14 (Build37)
Map Location 93,504,419 - 93,634,630
singlet/doubletdoublet
Overlap genePcdh9, LOC668566
Upstream geneLOC638252
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227G12.bB6Ng01-227G12.g
ACCGA041083GA041084
length9901,186
definitionB6Ng01-227G12.b B6Ng01-227G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,504,419 - 93,505,409)(93,633,471 - 93,634,630)
sequence
gaattctgaactaatgattaactaggagagtttctgatagcagtgtacac
gtcataacctagtattacgagtgaccatttatttataattaaataaataa
atttaaaaacaccagagaatagtaaaatattttgaaatgctgttatgcta
aaattaacaacttctgctcgatacttggattttgagctattcaatccata
taacagtggcaagatggtaataatttcaattattcttcaaaagtttgcac
cacgcaatactatgctatattaagttaatgatatctgagatccagtgagg
tctacaattaaaactcgctagttaattaagcattgtcagggtcaatttta
gaataatatgctatttttgagaaatgatctccattgatatattcaactat
aagaaaatagatgaaagaaaacaaaacaaaaagtaaggtataaagagtgg
tctagctcccaaaccaccatttttcttctctagtcaacaaacacagcagc
atgtgttcacctttaaggttatttcttctcaagtatacctcaaaagttac
atcacgtgtgaatattttgaagaattacaaagaacatcttactgctttca
atgaaaaccatgaatacttaatgaaaaaattactactttttgtgatttga
acccaaagtttcttaaatgctacactctccttttaaatctttatgttcaa
agactgcgcccagtacatagttaaaccggttaactgattaataaataatg
gattgaactagatttaaatagttctttctcctcagtagtattcactgttt
taaaatgtcatcttgcagaaagattataagagaggataagggagatttct
gtgaaactgtgtctcttagggatgtcagaaggtattcccaaaatgtctta
ccagcacaactatctaaatgtgaattaatcagggaggacaccagagggca
taccaaagtgcatagggttaggtcatgaggtctcaaccct

gaattcttattgggcgttcactcagtctcttgaaagtatttgtagggtat
gtggaatttatttttttcagaagcaattgaaacagcttttcaccatactc
aattttgtagttactgtatctccttaataatggataccaggcaattttat
ttggattttcattcaaaccatcacatttcctgctcctaccactcaccatg
tttatataactttgcagtctatgtagcataggctacatagttataaacag
atctgtggtgttttctgaaacaaaaataaatataggacttccttgtattt
tggcacaagcttccattgagtctctggaaattcctgatacaaattggttt
aaaatgcccctattaattattattctgtgactaatatatagaaaactttt
agcataataaacaaaagtttatcatgttatattttttcttcgagtttaat
gaaaaatatggaattaatactagaaaaatgtggttattcttgcacaaaaa
taaggtataaaaatgtacctctatttgcaggtcttagaagagatatcata
tgttaaaatgctcaataaagatacctcagtaatgtgcttgctttgttaaa
tatgctttcctttatcagtttttaattgcacatccagacatttaaatgta
actactctctgtctgtcatctaaaacccacagtaggatgagtagatgttg
ctaagtaacatatgcattgcctcgcagtaaacaatttcatggttagaaca
gttagtacctcctcttttatttttcttatgtttggtcctgacaacggact
tcccctagcaacaatttcacatagtaagggtttgatcatgtggagtgtaa
aactaagcctgactggatataaaatgtttttccaatgtggtacagatcag
tcttgttgtcagtgtcctgaagactcagcacaacactgggtctcgactac
catttttcacttactgttacagttatctgtgccctcacagaaaaggtgct
tctttctgaacagattttataaattgaaaattctgccttttgcaagctct
gaaagaatggtgtgatgttcataaaaagcagtttttccttattcccatct
tcaaaggaaggtgaacttgttttttttggagtgactgacagagaggccac
aattcttgccatcttgtgcaagagacctgccgaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93504419_93505409
seq2: B6Ng01-227G12.b_44_1033

seq1  GAATTCTGAACTAATGATTAACTAGGAGAGTTTCTGATAGCAGTGTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACTAATGATTAACTAGGAGAGTTTCTGATAGCAGTGTACAC  50

seq1  GTCATAACCTAGTATTACGAGTGACCATTTATTTATAATTAAATAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAACCTAGTATTACGAGTGACCATTTATTTATAATTAAATAAATAA  100

seq1  ATTTAAAAACACCAGAGAATAGTAAAATATTTTGAAATGCTGTTATGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAACACCAGAGAATAGTAAAATATTTTGAAATGCTGTTATGCTA  150

seq1  AAATTAACAACTTCTGCTCGATACTTGGATTTTGAGCTATTCAATCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACAACTTCTGCTCGATACTTGGATTTTGAGCTATTCAATCCATA  200

seq1  TAACAGTGGCAAGATGGTAATAATTTCAATTATTCTTCAAAAGTTTGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGGCAAGATGGTAATAATTTCAATTATTCTTCAAAAGTTTGCAC  250

seq1  CACGCAATACTATGCTATATTAAGTTAATGATATCTGAGATCCAGTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAATACTATGCTATATTAAGTTAATGATATCTGAGATCCAGTGAGG  300

seq1  TCTACAATTAAAACTCGCTAGTTAATTAAGCATTGTCAGGGTCAATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAATTAAAACTCGCTAGTTAATTAAGCATTGTCAGGGTCAATTTTA  350

seq1  GAATAATATGCTATTTTTGAGAAATGATCTCCATTGATATATTCAACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATATGCTATTTTTGAGAAATGATCTCCATTGATATATTCAACTAT  400

seq1  AAGAAAATAGATGAAAGAAAACAAAACAAAAAGTAAGGTATAAAGAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATAGATGAAAGAAAACAAAACAAAAAGTAAGGTATAAAGAGTGG  450

seq1  TCTAGCTCCCAAACCACCATTTTTCTTCTCTAGTCAACAAACACAGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCCCAAACCACCATTTTTCTTCTCTAGTCAACAAACACAGCAGC  500

seq1  ATGTGTTCACCTTTAAGGTTATTTCTTCTCAAGTATACCTCAAAAGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCACCTTTAAGGTTATTTCTTCTCAAGTATACCTCAAAAGTTAC  550

seq1  ATCACGTGTGAATATTTTGAAGAATTACAAAGAACATCTTACTGCTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGTGTGAATATTTTGAAGAATTACAAAGAACATCTTACTGCTTTCA  600

seq1  ATGAAAACCATGAATACTTAATGAAAAAATTACTACTTTTTGTGATTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACCATGAATACTTAATGAAAAAATTACTACTTTTTGTGATTTGA  650

seq1  ACCCAAAGTTTCTTAAATGCTACACTCTCCTTTTAAATCTTTATGTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGTTTCTTAAATGCTACACTCTCCTTTTAAATCTTTATGTTCAA  700

seq1  AGACTGCGCCCAGTACATAGTTAAACCGGTTAACTGATTAATAAATAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCGCCCAGTACATAGTTAAACCGGTTAACTGATTAATAAATAATG  750

seq1  GATTGAACTAGATTTAAATAGTTCTTTCTCCTCAGGTAGTATTCACTGTT  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GATTGAACTAGATTTAAATAGTTCTTTCTCCTCA-GTAGTATTCACTGTT  799

seq1  TTAAAATGTCATCTTGCAGAAAGATTATAAGAGAGGATAAGGGAGATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTCATCTTGCAGAAAGATTATAAGAGAGGATAAGGGAGATTTC  849

seq1  TGTGAAACTGTGTCTCTTAGGGATGTCAGAAGGTATTCCCAAAATGTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACTGTGTCTCTTAGGGATGTCAGAAGGTATTCCCAAAATGTCTT  899

seq1  ACCAGCACAACTATCTAAATGTGAATTAATCAGGGAGGACACCAGAGGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCACAACTATCTAAATGTGAATTAATCAGGGAGGACACCAGAGGGC  949

seq1  ATACCAAAGTGCATAGGGTTAGGTCATGAGGTCTCAACCCT  991
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAAGTGCATAGGGTTAGGTCATGAGGTCTCAACCCT  990


seq1: chr14_93633471_93634630
seq2: B6Ng01-227G12.g_65_1250 (reverse)

seq1  AGGTCGGCA-GTCTCTGCCACAAGATG--CAGAATTGTG--CTCTCTGTC  45
      || |||||| ||||||  |||||||||   |||||||||  |||||||||
seq2  AGTTCGGCAGGTCTCTTGCACAAGATGGCAAGAATTGTGGCCTCTCTGTC  50

seq1  AGTCACTC---AAAAAACA--GTCACCT--CTTTGAAGAT-GGAATAAG-  86
      ||||||||   ||||||||   ||||||  |||||||||| |||||||| 
seq2  AGTCACTCCAAAAAAAACAAGTTCACCTTCCTTTGAAGATGGGAATAAGG  100

seq1  -AAAACTGC-TTTTATGAACATCACA-CATTCTTTCAGAGCTTGCAAAA-  132
       |||||||| |||||||||||||||| |||||||||||||||||||||| 
seq2  AAAAACTGCTTTTTATGAACATCACACCATTCTTTCAGAGCTTGCAAAAG  150

seq1  GCAGAATTTCAATTTTATAAAAACTG-TCAG-AAGAAGCACC-TTTCTGT  179
      |||||||||  | ||||||||| ||| |||| |||||||||| |||||||
seq2  GCAGAATTTTCAATTTATAAAATCTGTTCAGAAAGAAGCACCTTTTCTGT  200

seq1  GAGGGCACAGAT-ACTGTTACAGTAAGTGAAAA--TGTGGTCGAGA-CCA  225
      |||||||||||| ||||| ||||||||||||||   || ||||||| |||
seq2  GAGGGCACAGATAACTGTAACAGTAAGTGAAAAATGGTAGTCGAGACCCA  250

seq1  GTGTTGTGCTGAGTCTTCAGGACACTGACAACAAGACTGATCTGTACCAC  275
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTGCTGAGTCTTCAGGACACTGACAACAAGACTGATCTGTACCAC  300

seq1  ATTGG-AAAACATTTTATATCCAGTCAGGCTTAGTTTTACACTCCACATG  324
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAAACATTTTATATCCAGTCAGGCTTAGTTTTACACTCCACATG  350

seq1  ATCAAACCCTTACTATGTGAAATTGTTGCTAGGGGAAGTCCGTTGTCAGG  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACCCTTACTATGTGAAATTGTTGCTAGGGGAAGTCCGTTGTCAGG  400

seq1  ACCAAACATAAGAAAAATAAAAGAGGAGGTACTAACTGTTCTAACCATGA  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACATAAGAAAAATAAAAGAGGAGGTACTAACTGTTCTAACCATGA  450

seq1  AATTGTTTACTGCGAGGCAATGCATATGTTACTTAGCAACATCTACTCAT  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTACTGCGAGGCAATGCATATGTTACTTAGCAACATCTACTCAT  500

seq1  CCTACTGTGGGTTTTAGATGACAGACAGAGAGTAGTTACATTTAAATGTC  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGTGGGTTTTAGATGACAGACAGAGAGTAGTTACATTTAAATGTC  550

seq1  TGGATGTGCAATTAAAAACTGATAAAGGAAAGCATATTTAACAAAGCAAG  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTGCAATTAAAAACTGATAAAGGAAAGCATATTTAACAAAGCAAG  600

seq1  CACATTACTGAGGTATCTTTATTGAGCATTTTAACATATGATATCTCTTC  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTACTGAGGTATCTTTATTGAGCATTTTAACATATGATATCTCTTC  650

seq1  TAAGACCTGCAAATAGAGGTACATTTTTATACCTTATTTTTGTGCAAGAA  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCTGCAAATAGAGGTACATTTTTATACCTTATTTTTGTGCAAGAA  700

seq1  TAACCACATTTTTCTAGTATTAATTCCATATTTTTCATTAAACTCGAAGA  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACATTTTTCTAGTATTAATTCCATATTTTTCATTAAACTCGAAGA  750

seq1  AAAAATATAACATGATAAACTTTTGTTTATTATGCTAAAAGTTTTCTATA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATAACATGATAAACTTTTGTTTATTATGCTAAAAGTTTTCTATA  800

seq1  TATTAGTCACAGAATAATAATTAATAGGGGCATTTTAAACCAATTTGTAT  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTCACAGAATAATAATTAATAGGGGCATTTTAAACCAATTTGTAT  850

seq1  CAGGAATTTCCAGAGACTCAATGGAAGCTTGTGCCAAAATACAAGGAAGT  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTTCCAGAGACTCAATGGAAGCTTGTGCCAAAATACAAGGAAGT  900

seq1  CCTATATTTATTTTTGTTTCAGAAAACACCACAGATCTGTTTATAACTAT  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATTTATTTTTGTTTCAGAAAACACCACAGATCTGTTTATAACTAT  950

seq1  GTAGCCTATGCTACATAGACTGCAAAGTTATATAAACATGGTGAGTGGTA  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTATGCTACATAGACTGCAAAGTTATATAAACATGGTGAGTGGTA  1000

seq1  GGAGCAGGAAATGTGATGGTTTGAATGAAAATCCAAATAAAATTGCCTGG  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGAAATGTGATGGTTTGAATGAAAATCCAAATAAAATTGCCTGG  1050

seq1  TATCCATTATTAAGGAGATACAGTAACTACAAAATTGAGTATGGTGAAAA  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATTATTAAGGAGATACAGTAACTACAAAATTGAGTATGGTGAAAA  1100

seq1  GCTGTTTCAATTGCTTCTGAAAAAAATAAATTCCACATACCCTACAAATA  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCAATTGCTTCTGAAAAAAATAAATTCCACATACCCTACAAATA  1150

seq1  CTTTCAAGAGACTGAGTGAACGCCCAATAAGAATTC  1160
      ||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGAGACTGAGTGAACGCCCAATAAGAATTC  1186


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