BAC Information

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BAC

Clone NameB6Ng01-227L17
Chromosome14 (Build37)
Map Location 112,521,074 - 112,629,273
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk5, LOC100043501
Downstream geneEG223186, LOC100043509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227L17.bB6Ng01-227L17.g
ACCGA041325GA041326
length1,192857
definitionB6Ng01-227L17.b B6Ng01-227L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,521,074 - 112,522,271)(112,628,700 - 112,629,273)
sequence
gaattcactactaatatttggtattgtgctgcttaatgaatgaaaaagta
aaactgagattagaatactgatctgacagtataagcaaatggctaattgt
ttattattatgtaggctttattataataccattaatataaatgcatggtt
tgtattcattatttatatctagaactcttcggagtaaatgcttgcaaata
atcttaacagtatatgaaaggattgctattaccatgaaatataaatatga
aatagaaataagaagcaagagaagtgaaaccattaaggctgtcatacaaa
gagaaaataaatagcttggaaatgtatcttaaaaaatgttattcaaagtt
agtattatatatgtaaaaaatatatatttgattttaaagaagccacttcc
ctattcattctgtagtacattgcttattttcaaatatatttcttattaaa
aaatgagtaattgttcatcacctagataatacatccttgaataagacaga
tgattgatgttaatcttattttttcatattaattttcatagccttacata
tttaatgtattcctcttgaatgatctacagctaatggaaaagatggagac
acatggtaataattttaaagtcctttgagaatctatagttaaccaatttc
aaagtgtgacaaatagacaatgtgggaaaatctaatatttgagcctgtcc
aaaatacaatgtaacatagattttgatactaaaattaatttgatttgcca
gccttattatccgcaaaaattatttgggtatgatattgcagtagtaataa
tcttttttttttttttttggtcttgattacttttgacattttgatatgtg
aaaaggccagagtagacataacatacataaatatattaagaaaaatgaag
atggaaatttcagaattattttaacaggtattccttatgcagtataggct
aacctatcagcaaaaggttgttcctgataatccttccatgtgcctggatt
agaagcgtgtgactatgccagttctcgtttactgaagacttttattatga
gagcagtactatacaaacatataaaggtcataattgagctttattaaact
atcctagaacaggcatatgctgattttaccttcacctgtgtttaacatcc
tagagagtgcatgtttggtcactggacaatattctctcctgg

gaattccagtgctgggaaaggggattaggaaagattataagacatgagga
aattcttctgtcagactgtatgttttagaaataactgccttaacaagatc
tgaacgatgataatgccaacacatatgctaatgcagaagggaaaatttca
tgatatctcatgcctagccaaagaaatacaggcatctaatgaatgttgaa
agaattagctgccctcatggctgagctgtctaagtggtcaatgttgaaag
tatatacatacaaaaaatgactcaggttttatttaactattcatacaaca
cattgaacatgtatgtacacacaggaagtagtcattactttgttgaaaag
aaatgggtggtcatgtgaaggattggagggaggggacagaggaatggtag
gaggaaaaaatgaagaggtgaacgatgcaattgtattttaattatctagg
actattaagggtggtaaggtgattaaggatcaaaaggaaggttactgctt
tgcattaaaaagataggaaaggtaccatcaaggcaaatgtctaacccgtt
tcaacactactttgatagcaaaaagctgaaagggatttctgcttctagaa
agaactcaccagtgattgcttatggaagtcgtggatatgagggctatctg
aagaaggcagttaagtttggcaatgtccgtgcggatttggaacatgagaa
aaacaagactggaagtcattttttcttctcccacatgtagcagtcagaga
ttttttgtgaggtggcttcagcgacaacattgaatgaaactggggtcagt
aaaactgaatcattttgaaaatccatcgatacaccatattaacactctat
ttttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112521074_112522271
seq2: B6Ng01-227L17.b_43_1234

seq1  GAATTCACTACTAATATTTGGTATTGTGCTGCTTAATGAATGAAAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACTAATATTTGGTATTGTGCTGCTTAATGAATGAAAAAGTA  50

seq1  AAACTGAGATTAGAATACTGATCTGACAGTATAAGCAAATGGCTAATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGATTAGAATACTGATCTGACAGTATAAGCAAATGGCTAATTGT  100

seq1  TTATTATTATGTAGGCTTTATTATAATACCATTAATATAAATGCATGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATGTAGGCTTTATTATAATACCATTAATATAAATGCATGGTT  150

seq1  TGTATTCATTATTTATATCTAGAACTCTTCGGAGTAAATGCTTGCAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCATTATTTATATCTAGAACTCTTCGGAGTAAATGCTTGCAAATA  200

seq1  ATCTTAACAGTATATGAAAGGATTGCTATTACCATGAAATATAAATATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAACAGTATATGAAAGGATTGCTATTACCATGAAATATAAATATGA  250

seq1  AATAGAAATAAGAAGCAAGAGAAGTGAAACCATTAAGGCTGTCATACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATAAGAAGCAAGAGAAGTGAAACCATTAAGGCTGTCATACAAA  300

seq1  GAGAAAATAAATAGCTTGGAAATGTATCTTAAAAAATGTTATTCAAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATAAATAGCTTGGAAATGTATCTTAAAAAATGTTATTCAAAGTT  350

seq1  AGTATTATATATGTAAAAAATATATATTTGATTTTAAAGAAGCCACTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTATATATGTAAAAAATATATATTTGATTTTAAAGAAGCCACTTCC  400

seq1  CTATTCATTCTGTAGTACATTGCTTATTTTCAAATATATTTCTTATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATTCTGTAGTACATTGCTTATTTTCAAATATATTTCTTATTAAA  450

seq1  AAATGAGTAATTGTTCATCACCTAGATAATACATCCTTGAATAAGACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTAATTGTTCATCACCTAGATAATACATCCTTGAATAAGACAGA  500

seq1  TGATTGATGTTAATCTTATTTTTTCATATTAATTTTCATAGCCTTACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATGTTAATCTTATTTTTTCATATTAATTTTCATAGCCTTACATA  550

seq1  TTTAATGTATTCCTCTTGAATGATCTACAGCTAATGGAAAAGATGGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTATTCCTCTTGAATGATCTACAGCTAATGGAAAAGATGGAGAC  600

seq1  ACATGGTAATAATTTTAAAGTCCTTTGAGAATCTATAGTTAACCAATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAATAATTTTAAAGTCCTTTGAGAATCTATAGTTAACCAATTTC  650

seq1  AAAGTGTGACAAATAGACAATGTGGGAAAATCTAATATTTGAGCCTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTGACAAATAGACAATGTGGGAAAATCTAATATTTGAGCCTGTCC  700

seq1  AAAATACAATGTAACATAGATTTTGATACTAAAATTAATTTGATTTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAATGTAACATAGATTTTGATACTAAAATTAATTTGATTTGCCA  750

seq1  GCCTTATTATCCGCAAAAATTATTTGGGTATGATATTGCAGTAGTAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATTATCCGCAAAAATTATTTGGGTATGATATTGCAGTAGTAATAA  800

seq1  TC--TTTTTTTTTTTTTTGGTCTTGATTACTTTTGACATTTTGATATGTG  848
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTTTTTTTTGGTCTTGATTACTTTTGACATTTTGATATGTG  850

seq1  -AAAGGCCAGAGTAGACATAACATACATAAATATATTAAGAAAAATGAAG  897
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCAGAGTAGACATAACATACATAAATATATTAAGAAAAATGAAG  900

seq1  ATGGAAATTTCAGAATTATTTTAACAGGTATTCCTTATGCAGTATAGGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATTTCAGAATTATTTTAACAGGTATTCCTTATGCAGTATAGGCT  950

seq1  AACCTATCAGCAAAAGGTTGTTCCTGATAA-CCTTCCATGTGCCTGGATT  996
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AACCTATCAGCAAAAGGTTGTTCCTGATAATCCTTCCATGTGCCTGGATT  1000

seq1  AGGAAAGCGTGTGACTATGCCAGGTTCTCGTTTACTGAAGACTTTTTAAT  1046
      ||  |||||||||||||||||| |||||||||||||||||||||||  ||
seq2  AG--AAGCGTGTGACTATGCCA-GTTCTCGTTTACTGAAGACTTTT--AT  1045

seq1  TATGAGGAAGCAGTACTATACAAACATATAAA-GTCATAATTGAGGCTTT  1095
      ||||||  |||||||||||||||||||||||| ||||||||||| |||||
seq2  TATGAG--AGCAGTACTATACAAACATATAAAGGTCATAATTGA-GCTTT  1092

seq1  AATAAAACTATCCTAG-ACA-GCATATTGCTGATTTTTAACCTTCA-CTG  1142
       || |||||||||||| ||| ||||| ||||||||||  ||||||| |||
seq2  -ATTAAACTATCCTAGAACAGGCATA-TGCTGATTTT--ACCTTCACCTG  1138

seq1  TGTTAACCCAATCATAGAGGATGCATGTTTGGTTTCACTGAACAAAAT--  1190
      |||| | |  ||| |||||  |||||||||||  |||||| |||| ||  
seq2  TGTTTAAC--ATCCTAGAGAGTGCATGTTTGG--TCACTGGACAATATTC  1184

seq1  TCTCCTGG  1198
      ||||||||
seq2  TCTCCTGG  1192


seq1: chr14_112628700_112629273
seq2: B6Ng01-227L17.g_345_924 (reverse)

seq1  CAAAAAAATA-AATGTTAATAT-GTGTAATCGATGGA-TTTCAAAATGAT  47
      |||||||||| | ||||||||| |||| ||||||||| ||||||||||||
seq2  CAAAAAAATAGAGTGTTAATATGGTGT-ATCGATGGATTTTCAAAATGAT  49

seq1  TCAGTTTTACTGA-CCCAGTTTCATTCAATGTTGTC-CTGAAGCCACCTC  95
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  TCAGTTTTACTGACCCCAGTTTCATTCAATGTTGTCGCTGAAGCCACCTC  99

seq1  ACAAAAAATCTCTGACTGCTACATGTGGGAGAAG-AAAAATGACTTCCAG  144
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAAAAAATCTCTGACTGCTACATGTGGGAGAAGAAAAAATGACTTCCAG  149

seq1  TCTTGTTTTTCTCATGTTCC-AATCCGCACGGACATTGCCAAACTTAACT  193
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTTGTTTTTCTCATGTTCCAAATCCGCACGGACATTGCCAAACTTAACT  199

seq1  GCCTTCTTCAGATAGCCCTCATATCCACGACTTCCATAAGCAATCACTGG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTCAGATAGCCCTCATATCCACGACTTCCATAAGCAATCACTGG  249

seq1  TGAGTTCTTTCTAGAAGCAGAAATCCCTTTCAGCTTTTTGCTATCAAAGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTTTCTAGAAGCAGAAATCCCTTTCAGCTTTTTGCTATCAAAGT  299

seq1  AGTGTTGAAACGGGTTAGACATTTGCCTTGATGGTACCTTTCCTATCTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGAAACGGGTTAGACATTTGCCTTGATGGTACCTTTCCTATCTTT  349

seq1  TTAATGCAAAGCAGTAACCTTCCTTTTGATCCTTAATCACCTTACCACCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCAAAGCAGTAACCTTCCTTTTGATCCTTAATCACCTTACCACCC  399

seq1  TTAATAGTCCTAGATAATTAAAATACAATTGCATCGTTCACCTCTTCATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGTCCTAGATAATTAAAATACAATTGCATCGTTCACCTCTTCATT  449

seq1  TTTTCCTCCTACCATTCCTCTGTCCCCTCCCTCCAATCCTTCACATGACC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCCTACCATTCCTCTGTCCCCTCCCTCCAATCCTTCACATGACC  499

seq1  ACCCATTTCTTTTCAACAAAGTAATGACTACTTCCTGTGTGTACATACAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTCTTTTCAACAAAGTAATGACTACTTCCTGTGTGTACATACAT  549

seq1  GTTCAATGTGTTGTATGAATAGTTAAATAAA  574
      |||||||||||||||||||||||||||||||
seq2  GTTCAATGTGTTGTATGAATAGTTAAATAAA  580


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