BAC Information

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BAC

Clone NameB6Ng01-228L15
Chromosome14 (Build37)
Map Location 12,790,471 - 12,794,635
singlet/doubletdoublet
Overlap genePtprg
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream geneLOC100042441, 3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228L15.bB6Ng01-228L15.g
ACCGA042070GA042071
length1,0861,093
definitionB6Ng01-228L15.b B6Ng01-228L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,790,471 - 12,791,551)(12,793,542 - 12,794,635)
sequence
gaattccaggttgtcaaaagcattggatgtgaagcccttggacatgtgct
tcttcccttaatgagttttgattgcttcacaatccatgttagcaattgat
tcacataaggggaaagttttaagaggttcactcccgtgtgtgttccttcc
agccccatctgtcctgttatttttgtgaattcacgctgtgttactataca
tgacaccaagagtagcttacacatttctcacagctgtggagactggaagt
caaacttctggcatctgaggagcccattcccagctgaaactttcatttct
ggttcctagagggtctcttctcactatgtcctccatgggtggaaagggtc
aggctctctcccctgctcattctttccatgcctgaaaactccagtattat
gatctcaacaccttccaaaggccccaacatctaataaagaacactgggaa
ttgggatttcaatggccacgttttctgccctcacagactttccattttaa
accattgtcttctggtattgacctttcatcccgtaacgtctgtttcctgt
gttggtgtgcatttccttttcagtcttgtggtattctttagttctcttct
ttaagttcactaattttattttgatagaatatggtgatctttcaaagaaa
gtgtttgtattcaaatcataaatggaaaacccaggggttcgacacagaat
tactgttaaaattaagcctataatccatgaaaataaatcaaagattccta
tgttattaaattctagtttaatacttcccttttgaaacaaagagtggcat
ggataagtaacagggattttcttttcaaagaaaacgagtgcattgaaata
atttgtaaaagaaagtgtcattttttttcatctgtgttggagcaaactga
aaatgaccatttcagcccccaagttttagcacgcagggccccagggccct
tggcttcacattttaaatttctgctagtcctgcagtgacctgagtgtcag
gtttgcttccctgggagggagccttcctccttcttctgagtgaggagagg
gtgttcagtgaacgggtccatgtaggagggctggga
gaattcaagagtaacggaagtgggaattacagctgtgcacagttgtgaaa
agtcaccatgtagacacgtggaggttgctcacaatccttcaagtaaccaa
tcccccatgctttgtaaagaagcctaataaatgccccaattccccaattt
ggcctctggtaggattgattttggtttgtcacttgtgtccttgaaggagg
gagacagaaatttggttacatctccctattgtggcaaagagtcaccacaa
taattttaagactgagacatcccatttaatatataggagaaaatggagat
atttccagaaagcaagatacttctgaaacactggttcttgaagctgcccc
aggattcaagaaatcagatgagaaacatacaataagccacatgtgacagg
catgtctctttgactaaaacaaaacaaaataaaaacaaacaacaaactac
aagacaataacaacaaaaccttaggcaactgagcaccaaaaaggttttgg
agtcttgttctctattgaggcatcaacagtggccagccagccagagctgt
ggacggccatcttcatcagtacttcccatgcccagcagtgcagcgcacaa
cctcatcaatggtaattcacgaaaatattggcccataattccatttcctc
tcctgctttctttaactccatgcataagaaaattatgctcagttcatgac
aacccatcaaaacatccacaacataaaagacatgaaccaattcaaaaccc
aaatactaaaaaagtagctctcttcctcaaacccaagatgaggaatttaa
gaatcatttggatttccattccaataaagctttagttttttgcaagggga
atgtgattatctaaattcatacaaaagtttctcttttaactgctccaggc
tcacttcttcctttttgttcccttctaaagttgattcattcattcatttt
aacaaattcttattgggctgctaaattacacggagctgccatcgatacac
ttgatttggcttaggaccaaaggcaagccttgtgttggagaaggaagcac
tcggttctcatgtctcctcttctaaagtccagtcacagcgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12790471_12791551
seq2: B6Ng01-228L15.b_49_1134

seq1  GAATTCCAGGTTGTCAAAAGCATTGGATGTGAAGCCCTTGGACATGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTGTCAAAAGCATTGGATGTGAAGCCCTTGGACATGTGCT  50

seq1  TCTTCCCTTAATGAGTTTTGATTGCTTCACAATCCATGTTAGCAATTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTTAATGAGTTTTGATTGCTTCACAATCCATGTTAGCAATTGAT  100

seq1  TCACATAAGGGGAAAGTTTTAAGAGGTTCACTCCCGTGTGTGTTCCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAGGGGAAAGTTTTAAGAGGTTCACTCCCGTGTGTGTTCCTTCC  150

seq1  AGCCCCATCTGTCCTGTTATTTTTGTGAATTCACGCTGTGTTACTATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCATCTGTCCTGTTATTTTTGTGAATTCACGCTGTGTTACTATACA  200

seq1  TGACACCAAGAGTAGCTTACACATTTCTCACAGCTGTGGAGACTGGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCAAGAGTAGCTTACACATTTCTCACAGCTGTGGAGACTGGAAGT  250

seq1  CAAACTTCTGGCATCTGAGGAGCCCATTCCCAGCTGAAACTTTCATTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCTGGCATCTGAGGAGCCCATTCCCAGCTGAAACTTTCATTTCT  300

seq1  GGTTCCTAGAGGGTCTCTTCTCACTATGTCCTCCATGGGTGGAAAGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTAGAGGGTCTCTTCTCACTATGTCCTCCATGGGTGGAAAGGGTC  350

seq1  AGGCTCTCTCCCCTGCTCATTCTTTCCATGCCTGAAAACTCCAGTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTCTCCCCTGCTCATTCTTTCCATGCCTGAAAACTCCAGTATTAT  400

seq1  GATCTCAACACCTTCCAAAGGCCCCAACATCTAATAAAGAACACTGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAACACCTTCCAAAGGCCCCAACATCTAATAAAGAACACTGGGAA  450

seq1  TTGGGATTTCAATGGCCACGTTTTCTGCCCTCACAGACTTTCCATTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTTCAATGGCCACGTTTTCTGCCCTCACAGACTTTCCATTTTAA  500

seq1  ACCATTGTCTTCTGGTATTGACCTTTCATCCCGTAACGTCTGTTTCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGTCTTCTGGTATTGACCTTTCATCCCGTAACGTCTGTTTCCTGT  550

seq1  GTTGGTGTGCATTTCCTTTTCAGTCTTGTGGTATTCTTTAGTTCTCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGTGCATTTCCTTTTCAGTCTTGTGGTATTCTTTAGTTCTCTTCT  600

seq1  TTAAGTTCACTAATTTTATTTTGATAGAATATGGTGATCTTTCAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTCACTAATTTTATTTTGATAGAATATGGTGATCTTTCAAAGAAA  650

seq1  GTG-TTGTATTCAAATCATAAATGGAAAACCCAGGGGTTCGACACAGAAT  699
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTATTCAAATCATAAATGGAAAACCCAGGGGTTCGACACAGAAT  700

seq1  TACTGTTAAAATTAAGCCTATAATCCATGAAAATAAATCAAAGATTCCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTAAAATTAAGCCTATAATCCATGAAAATAAATCAAAGATTCCTA  750

seq1  TGTTATTAAATTCTAGTTTAATACTTCCC-TTTGAAACAAAGAGTGGCAT  798
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTTATTAAATTCTAGTTTAATACTTCCCTTTTGAAACAAAGAGTGGCAT  800

seq1  GGATAAGTAACAGGGATTTTCTTTTCAAAGAAAACGAGTGCATTGAAATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGTAACAGGGATTTTCTTTTCAAAGAAAACGAGTGCATTGAAATA  850

seq1  ATTTGTAAAAGAAAGTGTCATTTTTTTTCATCTGTGTTGGAGCAAACTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAAAGAAAGTGTCATTTTTTTTCATCTGTGTTGGAGCAAACTGA  900

seq1  AAATGACCA-TTCAGCCCCCAAG-TTTAGCACGCAGGGCCCCAGGGCCCT  946
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  AAATGACCATTTCAGCCCCCAAGTTTTAGCACGCAGGGCCCCAGGGCCCT  950

seq1  TGGCTTCACATTT--AAATTCTGCTAGTCCTGCAGTGACCTGAGGTGTCA  994
      |||||||||||||  || ||||||||||||||||||||||||| ||||||
seq2  TGGCTTCACATTTTAAATTTCTGCTAGTCCTGCAGTGACCTGA-GTGTCA  999

seq1  GGGTTGCTTCCCTGGGAGGGAGC--TCCCCCTTC-TCTGAGGTGAAGGAG  1041
      || ||||||||||||||||||||  ||| ||||| ||||| ||| |||||
seq2  GGTTTGCTTCCCTGGGAGGGAGCCTTCCTCCTTCTTCTGA-GTG-AGGAG  1047

seq1  AGGGTGTT-AGTGGAAGGGGCCATGTAAGGAGGGGCTGGGA  1081
      |||||||| |||| | ||| |||||| |||| |||||||||
seq2  AGGGTGTTCAGTGAACGGGTCCATGT-AGGA-GGGCTGGGA  1086

seq1: chr14_12793542_12794635
seq2: B6Ng01-228L15.g_70_1162 (reverse)

seq1  GCACGGCTGTGACTGGGACCTTTTTAGGAAGAGGAGACAATGAGAACCCG  50
      |||| ||||||||| ||||   |||| ||||||||||| ||||||| |||
seq2  GCAC-GCTGTGACT-GGAC---TTTA-GAAGAGGAGAC-ATGAGAA-CCG  42

seq1  AGTGCTTCCCTTCTCCAACAC-AGGCTTGCCTTTGGTCCTAAGCC-AATC  98
      ||||||| ||||||||||||| ||||||||||||||||||||||| ||||
seq2  AGTGCTT-CCTTCTCCAACACAAGGCTTGCCTTTGGTCCTAAGCCAAATC  91

seq1  -AGTGTATCGATTGGCAGCTTCCGTGT-ATTTAGCAG-CCAATAAGAATT  145
       |||||||||| ||||||| ||||||| ||||||||| ||||||||||||
seq2  AAGTGTATCGA-TGGCAGC-TCCGTGTAATTTAGCAGCCCAATAAGAATT  139

seq1  TGTT-AAATGAATGAATGAATCAACTTTAG-AGGGAACAAAAAGGA--GA  191
      |||| ||||||||||||||||||||||||| |||||||||||||||   |
seq2  TGTTAAAATGAATGAATGAATCAACTTTAGAAGGGAACAAAAAGGAAGAA  189

seq1  GTGAGCCTGGAGCAGTTTAAAAGAGAAACTTTTGTATGAATTTAGATAAT  241
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGAGCCTGGAGCAG-TTAAAAGAGAAACTTTTGTATGAATTTAGATAAT  238

seq1  CACATTCCCCTTGC-AAAAACTAAAGCTTTATTGGAATGGAAATCCAAAT  290
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACATTCCCCTTGCAAAAAACTAAAGCTTTATTGGAATGGAAATCCAAAT  288

seq1  GATTCTTGAATTCCTCATCTTGGGTTTGAGGAAGAGAGCTACTTTTTTAG  340
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTAAATTCCTCATCTTGGGTTTGAGGAAGAGAGCTACTTTTTTAG  338

seq1  TATTTGGGTTTTGAATTGGTTCATGTC-TTTATGTTGTGGATGTTTTGAT  389
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATTTGGGTTTTGAATTGGTTCATGTCTTTTATGTTGTGGATGTTTTGAT  388

seq1  GGGTTGTCATGAACTGAGCATAATTTTCTTATGCATGGAGTTAAAGAAAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTCATGAACTGAGCATAATTTTCTTATGCATGGAGTTAAAGAAAG  438

seq1  CAGGAGAGGAAATGGAATTATGGGCCAATATTTTCGTGAATTACCATTGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGGAAATGGAATTATGGGCCAATATTTTCGTGAATTACCATTGA  488

seq1  TGAGGTTGTGCGCTGCACTGCTGGGCATGGGAAGTACTGATGAAGATGGC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTGTGCGCTGCACTGCTGGGCATGGGAAGTACTGATGAAGATGGC  538

seq1  CGTCCACAGCTCTGGCTGGCTGGCCACTGTTGATGCCTCAATAGAGAACA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCACAGCTCTGGCTGGCTGGCCACTGTTGATGCCTCAATAGAGAACA  588

seq1  AGACTCCAAAACCTTTTTGGTGCTCAGTTGCCTAAGGTTTTGTTGTTATT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCAAAACCTTTTTGGTGCTCAGTTGCCTAAGGTTTTGTTGTTATT  638

seq1  GTCTTGTAGTTTGTTGTTTGTTTTTATTTTGTTTTGTTTTAGTCAAAGAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTAGTTTGTTGTTTGTTTTTATTTTGTTTTGTTTTAGTCAAAGAG  688

seq1  ACATGCCTGTCACATGTGGCTTATTGTATGTTTCTCATCTGATTTCTTGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTGTCACATGTGGCTTATTGTATGTTTCTCATCTGATTTCTTGA  738

seq1  ATCCTGGGGCAGCTTCAAGAACCAGTGTTTCAGAAGTATCTTGCTTTCTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGGGCAGCTTCAAGAACCAGTGTTTCAGAAGTATCTTGCTTTCTG  788

seq1  GAAATATCTCCATTTTCTCCTATATATTAAATGGGATGTCTCAGTCTTAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATCTCCATTTTCTCCTATATATTAAATGGGATGTCTCAGTCTTAA  838

seq1  AATTATTGTGGTGACTCTTTGCCACAATAGGGAGATGTAACCAAATTTCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGTGGTGACTCTTTGCCACAATAGGGAGATGTAACCAAATTTCT  888

seq1  GTCTCCCTCCTTCAAGGACACAAGTGACAAACCAAAATCAATCCTACCAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTCCTTCAAGGACACAAGTGACAAACCAAAATCAATCCTACCAG  938

seq1  AGGCCAAATTGGGGAATTGGGGCATTTATTAGGCTTCTTTACAAAGCATG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAATTGGGGAATTGGGGCATTTATTAGGCTTCTTTACAAAGCATG  988

seq1  GGGGATTGGTTACTTGAAGGATTGTGAGCAACCTCCACGTGTCTACATGG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTGGTTACTTGAAGGATTGTGAGCAACCTCCACGTGTCTACATGG  1038

seq1  TGACTTTTCACAACTGTGCACAGCTGTAATTCCCACTTCCGTTACTCTTG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTCACAACTGTGCACAGCTGTAATTCCCACTTCCGTTACTCTTG  1088

seq1  AATTC  1094
      |||||
seq2  AATTC  1093