BAC Information

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BAC

Clone NameB6Ng01-228M04
Chromosome14 (Build37)
Map Location 115,939,176 - 116,087,146
singlet/doubletdoublet
Overlap geneGpc5
Upstream geneLOC100043521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228M04.bB6Ng01-228M04.g
ACCGA042096GA042097
length1,1111,174
definitionB6Ng01-228M04.b B6Ng01-228M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,939,176 - 115,940,277)(116,085,963 - 116,087,146)
sequence
gaattccagggagctggagacttgggctatcagcttgtagattatagaat
ccaaactcttcttctgacttactagggttaggacttattagggttagggt
tacaagaatctcattgtccctggcccttcaatatatctcattcttctatt
ttcaaattgttgtctaactctatctatctatctatctatctatctatcta
tctatccatcaacctataatctatttatttattatgtatctactatgttt
ctatcatctctccctctgtctttttccctcatctttccattccctatttc
aacttctttttttttttaaataaaatttgcttgtaatttttaaaagactg
agaaaagaaaccaggaaagatgagagagagagagacagagacacagagag
atatagacagagagactgaggcagagaggaaagctcaggtgactaacctt
taacatgattaggaatacatggagtctgtacattctaaggaccccagaga
ctgctttacagaacttctgggagaatgtgaacaatgtagttagtgagata
tcagacaaattcacctggaaatgtgaagtcacttggtccttgggaccatg
aacatctatcctaatcaggttaatatttctactgaatcatttattctcta
ttacttaaagatttataaatatgcttaggagatcatcagttgaccaaaac
atggttgtaatcatatgctgacatatactctttttggtaggtaatttgta
gtaaatatgatctatttgatttctggttttctttctggtcctcaccaaca
aaagagtttgggtaaagtttctgatgggtggctagtgtctctctccatct
atttcccacatataaattttcttccatttgccttcattattttttcattt
ttctttgttttataagtctgtgcctttaatgaaaagctgtctcagaaacc
ttcagaaatccacatcacatacatagaaaagaatgaaaaaaaaaaaaaaa
aaccatacctcctcaatttgtttgtagaagaagatgagttgaactgaatg
aactctctacgtaccttccagctctaaatttaatgtttgttgtcaccaaa
ggcagaacaaa

gaattcatacctgaggttatttaattaaatctattttctacaaaggaggt
aatgatcagagatcagctaatttgtttgttatttcacagcaagctcatat
caaaagagagtccctaaatggcaaaaaaaggaaaatatagaagaaaccag
aatccccaactggaaaaaaaagacagataaaagaaattattgcaataaca
tctatagtattgctgtgttttcttatttgaaaacttaataccatttatac
ttgggagtacgataaaatatattttatgaaatcatttcattcatttcatt
caacatagaaacatagacctacactgcttttgaatattgctcattgtttt
atgaaaatgatttaaaacaacaagtgtcatttaaaataaaaatggcatag
gagcacatttatggctcatacagacatgtttatttaaaaggaagcaaaat
ttttcctgttttatgtggttttgatataaagtgtgccttccaccctcctt
tccagtgattagaacttctaccactgctaattgcatggttatctataaat
ttgtagggttttctaatgtgatccagaaatatatgattagctaatgtaat
gaatcagagttgttcttcatagtgattaaaatacaaaggttcttttgggt
tggacaacaaagaagattagtcttctgtgctggctcaggccacttgatca
cctgccgctaagtgagtgcacttgttttcccccagggaagtaaattcatt
tttatcttcatgacttcctagaataaggaatattatttactatccaactg
aaattcaaatatcaaaagaaaataagtgtccaacctaagtacaaagttgt
agaggttgctcaggaaacaactcctgctggctcagttatagaaaaaaaaa
tctgacctgaaactgcatagattgatgaatgtattgaagagtacaatgga
gaagaaactctagactaagaagatgtttaaagattgggtgtctacagtat
atatttgtaactagaattattttcttattcagataaagtctcatttctcc
aagtaatgaaacttgaaatgaacatttaccgcattagttaattggatttt
tcctaccttctgatagcttttaggattaccctcaagccgccatcagtcta
caagatttcacatttggattacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_115939176_115940277
seq2: B6Ng01-228M04.b_47_1157

seq1  GAATTCCAGGGAGCTGGAGACTTGGGCTATCAGCTTGTAGATTATAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGCTGGAGACTTGGGCTATCAGCTTGTAGATTATAGAAT  50

seq1  CCAAACTCTTCTTCTGACTTACTAGGGTTAGGACTTATTAGGGTTAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTCTTCTTCTGACTTACTAGGGTTAGGACTTATTAGGGTTAGGGT  100

seq1  TACAAGAATCTCATTGTCCCTGGCCCTTCAATATATCTCATTCTTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAATCTCATTGTCCCTGGCCCTTCAATATATCTCATTCTTCTATT  150

seq1  TTCAAATTGTTGTCTAACTCTATCTATCTATCTATCTATCTATCTATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTGTTGTCTAACTCTATCTATCTATCTATCTATCTATCTATCTA  200

seq1  TCTATCCATCAACCTATAATCTATTTATTTATTATGTATCTACTATGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCATCAACCTATAATCTATTTATTTATTATGTATCTACTATGTTT  250

seq1  CTATCATCTCTCCCTCTGTCTTTTTCCCTCATCTTTCCATTCCCTATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATCTCTCCCTCTGTCTTTTTCCCTCATCTTTCCATTCCCTATTTC  300

seq1  AACTTCTTTTTTTTTTTAAATAAAATTTGCTTGTAATTTTTAAAAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTTTTTTTTTTAAATAAAATTTGCTTGTAATTTTTAAAAGACTG  350

seq1  AGAAAAGAAACCAGGAAAGATGAGAGAGAGAGAGACAGAGACACAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAACCAGGAAAGATGAGAGAGAGAGAGACAGAGACACAGAGAG  400

seq1  ATATAGACAGAGAGACTGAGGCAGAGAGGAAAGCTCAGGTGACTAACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGACAGAGAGACTGAGGCAGAGAGGAAAGCTCAGGTGACTAACCTT  450

seq1  TAACATGATTAGGAATACATGGAGTCTGTACATTCTAAGGACCCCAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGATTAGGAATACATGGAGTCTGTACATTCTAAGGACCCCAGAGA  500

seq1  CTGCTTTACAGAACTTCTGGGAGAATGTGAACAATGTAGTTAGTGAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTACAGAACTTCTGGGAGAATGTGAACAATGTAGTTAGTGAGATA  550

seq1  TCAGACAAATTCACCTGGAAATGTGAAGTCACTTGGTCCTTGGGACCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAAATTCACCTGGAAATGTGAAGTCACTTGGTCCTTGGGACCATG  600

seq1  AACATCTATCCTAATCAGGTTAATATTTCTACTGAATCATTTATTCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTATCCTAATCAGGTTAATATTTCTACTGAATCATTTATTCTCTA  650

seq1  TTACTTAAAGATTTATAAATATGCTTAGGAGATCATCAGTTGACCAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAAAGATTTATAAATATGCTTAGGAGATCATCAGTTGACCAAAAC  700

seq1  ATGGTTGTAATCATATGCTGACATATACTCTTTTTGGTAGGTAATTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTAATCATATGCTGACATATACTCTTTTTGGTAGGTAATTTGTA  750

seq1  GTAAATATGATCTATTTGATTTCTGGTTTTCTTTCTGGTCCTCACCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATGATCTATTTGATTTCTGGTTTTCTTTCTGGTCCTCACCAACA  800

seq1  AAAGAGTTTGGGTAAAGTTTCTGATGGGTGGCTAGTGTCTCTCTCCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTTGGGTAAAGTTTCTGATGGGTGGCTAGTGTCTCTCTCCATCT  850

seq1  ATTT-CCACATAT-AATTTTCTTCCATTTGCCTTCATTATTTTTTCATTT  898
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCACATATAAATTTTCTTCCATTTGCCTTCATTATTTTTTCATTT  900

seq1  TTCTTTGTTTTATAAGTCTGTGCCTTTAATGAAAAGCTGTCTCAGAAACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTTTTATAAGTCTGTGCCTTTAATGAAAAGCTGTCTCAGAAACC  950

seq1  TTCAGAAATCCACATCACATACATAGAAAAGAATG--AAAAAAAAAAAAA  996
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TTCAGAAATCCACATCACATACATAGAAAAGAATGAAAAAAAAAAAAAAA  1000

seq1  AACCATACCTCCTCAATTTGTTTGTAG-AGAGGATGAGTTGAACTGAATG  1045
      ||||||||||||||||||||||||||| ||| ||||||||||||||||||
seq2  AACCATACCTCCTCAATTTGTTTGTAGAAGAAGATGAGTTGAACTGAATG  1050

seq1  ACCTCT-AAGGTACCTTCCAGCTCTAAATTT-ATG-TTGTTGTCACCAAA  1092
      | ||||  | ||||||||||||||||||||| ||| ||||||||||||||
seq2  AACTCTCTACGTACCTTCCAGCTCTAAATTTAATGTTTGTTGTCACCAAA  1100

seq1  GGCAG-ACAAA  1102
      ||||| |||||
seq2  GGCAGAACAAA  1111


seq1: chr14_116085963_116087146
seq2: B6Ng01-228M04.g_68_1241 (reverse)

seq1  AGGTAAATCAAATGTGAATATTGGTAGAACTGATGTGCGGCCTGAGTGTA  50
      ||||||  ||||||||||   | |||| ||||||| ||||| |||| |||
seq2  AGGTAATCCAAATGTGAAATCTTGTAG-ACTGATG-GCGGCTTGAGGGTA  48

seq1  ATTCTAAAAACAGCTATCAG-AGGTA-GAAAAATCAAATTTACCTAATGC  98
      || |||||   ||||||||| ||||| |||||||| || ||| |||||||
seq2  ATCCTAAA---AGCTATCAGAAGGTAGGAAAAATCCAA-TTAACTAATGC  94

seq1  GGTAAATGTTCATTTTAAAGTTTCATTACTTGAAGAAATGAGACTTTATC  148
      |||||||||||| ||| ||||||||||||||| |||||||||||||||||
seq2  GGTAAATGTTCA-TTTCAAGTTTCATTACTTGGAGAAATGAGACTTTATC  143

seq1  TG-ATAAGAAAATAATTCCTAGTTACCAATATATAACTGTAGACACCCAA  197
      || |||||||||||||| |||||||| ||||||| |||||||||||||||
seq2  TGAATAAGAAAATAATT-CTAGTTACAAATATAT-ACTGTAGACACCCAA  191

seq1  TCTTTAAACATCTTCTTAGTCTAGAGTTTTCTCTCCATTGTACTCTTCAA  247
      |||||||||||||||||||||||||||||  ||||||||||||||||| |
seq2  TCTTTAAACATCTTCTTAGTCTAGAGTTTCTTCTCCATTGTACTCTTC-A  240

seq1  ATACATTTCATCAATCTATTGCAGTTTCAGGTCAGATTTTTTTTTCTATA  297
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  ATACA-TTCATCAATCTA-TGCAGTTTCAGGTCAGATTTTTTTTTCTATA  288

seq1  ACTGAGCCAGCAGGAGTTTGTTTCCTGAGCAACCTCTACAACCTTGTACT  347
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  ACTGAGCCAGCAGGAG-TTGTTTCCTGAGCAACCTCTACAACTTTGTACT  337

seq1  TAGGTTGGACACTTATTTTCTTTTGATATTTGAATTTCAGTTGGATAGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGGACACTTATTTTCTTTTGATATTTGAATTTCAGTTGGATAGTA  387

seq1  AATAATATTCCTTATTCTAGGAAGTCATGAAGATAAAAATGAATTTACTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTCCTTATTCTAGGAAGTCATGAAGATAAAAATGAATTTACTT  437

seq1  CCCTGGGGGAAAACAAGTGCACTCACTTAGCGGCAGGTGATCAAGTGGCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGGAAAACAAGTGCACTCACTTAGCGGCAGGTGATCAAGTGGCC  487

seq1  TGAGCCAGCACAGAAGACTAATCTTCTTTGTTGTCCAACCCAAAAGAACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGCACAGAAGACTAATCTTCTTTGTTGTCCAACCCAAAAGAACC  537

seq1  TTTGTATTTTAATCACTATGAAGAACAACTCTGATTCATTACATTAGCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTTAATCACTATGAAGAACAACTCTGATTCATTACATTAGCTA  587

seq1  ATCATATATTTCTGGATCACATTAGAAAACCCTACAAATTTATAGATAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATATTTCTGGATCACATTAGAAAACCCTACAAATTTATAGATAAC  637

seq1  CATGCAATTAGCAGTGGTAGAAGTTCTAATCACTGGAAAGGAGGGTGGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATTAGCAGTGGTAGAAGTTCTAATCACTGGAAAGGAGGGTGGAA  687

seq1  GGCACACTTTATATCAAAACCACATAAAACAGGAAAAATTTTGCTTCCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACTTTATATCAAAACCACATAAAACAGGAAAAATTTTGCTTCCTT  737

seq1  TTAAATAAACATGTCTGTATGAGCCATAAATGTGCTCCTATGCCATTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAACATGTCTGTATGAGCCATAAATGTGCTCCTATGCCATTTTT  787

seq1  ATTTTAAATGACACTTGTTGTTTTAAATCATTTTCATAAAACAATGAGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATGACACTTGTTGTTTTAAATCATTTTCATAAAACAATGAGCA  837

seq1  ATATTCAAAAGCAGTGTAGGTCTATGTTTCTATGTTGAATGAAATGAATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAAAGCAGTGTAGGTCTATGTTTCTATGTTGAATGAAATGAATG  887

seq1  AAATGATTTCATAAAATATATTTTATCGTACTCCCAAGTATAAATGGTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTTCATAAAATATATTTTATCGTACTCCCAAGTATAAATGGTAT  937

seq1  TAAGTTTTCAAATAAGAAAACACAGCAATACTATAGATGTTATTGCAATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTCAAATAAGAAAACACAGCAATACTATAGATGTTATTGCAATA  987

seq1  ATTTCTTTTATCTGTCTTTTTTTTCCAGTTGGGGATTCTGGTTTCTTCTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTATCTGTCTTTTTTTTCCAGTTGGGGATTCTGGTTTCTTCTA  1037

seq1  TATTTTCCTTTTTTTGCCATTTAGGGACTCTCTTTTGATATGAGCTTGCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTTTTTTTGCCATTTAGGGACTCTCTTTTGATATGAGCTTGCT  1087

seq1  GTGAAATAACAAACAAATTAGCTGATCTCTGATCATTACCTCCTTTGTAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATAACAAACAAATTAGCTGATCTCTGATCATTACCTCCTTTGTAG  1137

seq1  AAAATAGATTTAATTAAATAACCTCAGGTATGAATTC  1184
      |||||||||||||||||||||||||||||||||||||
seq2  AAAATAGATTTAATTAAATAACCTCAGGTATGAATTC  1174


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