BAC Information

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BAC

Clone NameB6Ng01-229E22
Chromosome19 (Build37)14 (Build37)
Map Location 38,268,897 - 38,269,243122,055,064 - 122,056,083
singlet/doubletsingletsinglet
Overlap gene5730455O13Rik
Upstream geneCpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c
Downstream geneLgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229E22.bB6Ng01-229E22.g
ACCGA042493GA042494
length5841,027
definitionB6Ng01-229E22.b B6Ng01-229E22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,268,897 - 38,269,243)(122,055,064 - 122,056,083)
sequence
gaattccatatccactcattgagcccacagcaatcaggtctttgctcagg
tatatcaggatgggtgtttctgtgaaggtatccatgcctggggtttcctg
aaacttgggctacattcaaaatcagtgcatagctgaggatgattttgaac
tcccaatcctcccatgtgctaagatgacaggcatgtgccatcagacccag
cttgggttgtttttttatgtgtcttagttggggttttactgctgtgaaca
gacaccatgaccacgacaagtcttataaaaaaaaaaaaaaaaaaaaaaaa
aacaacatttaattggggctggcttacaggttcagaggtctgtccattac
catcaaggcaggaacgtggcagtatccagacaggcatggcacaggcagag
ctgagagttctacatcttcatccaaaggctgctagtggaagactgacttc
caggcagctagggtgaggatcttatgcccacacccacagtgacacaccta
ctccaaccaggtcacacctattccaacaaggccataccgccaaatggtgc
cacgccctgatccaagaatatacaaaccatcaca
gaattcaccaccatgtccgcaatcccctcctacaacaaatcaataattct
ttttttaattatagagagatgaccacaaaaatcagacgcccctaaacaca
atggagttgagaagacgctgtgatgcttctgatgttaaggacttttgggg
attcctaaataaataaataaataaataagccagacagacagacagacagc
tggccaagtacacctagaataaaaggaatttgccaacaaagtaactcaaa
aagttaccaactattctgtatagagttccttaggcagatactaaaagggt
ctcctccaaattaaaaaattaaagaaaaccataataacaacaaacagaag
aggagagcagagggtggcgatgtcggtccattggtagagtgctcatccag
caagcctgaggcccagggctggatccccagcagtgcacaagtgtgcatgg
ttgcctgcctctctgggcagcacgtgggaggagaagcaggaggatcagaa
ggaccgggtcaccttctacttgttttgaggccagcctagactacgtgaga
cacaatacataaaggagcacagcaacagggtcctggaagcagagcgtcct
atatggtaaggaaggggaagagaaagggtttacaggagcagctctgaggg
tggaggcagtcatcagtctaggatggtcctgccttctagcacaggagcca
tggataaggggtgaggtgtaagcacctgcaactaaagaaagctgaaaatg
actgcttcagatgtgcaggcgtgcaggggtgcgggtatgcagggtgcagg
tatgcagggtgcaggggtacaggggtgcggatatgcaggggtataaggcg
tgcaggggtgcgggtatgcaagggtacaggggtgcggatatgcaggggta
tttggcatgcaggggtgcccgggtgcaggtatgcagggttgcaacactca
gcctctctctggttgcgatgagatggagatggagcattattaactagagg
gtggacgatgcaactggaatctttagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38268897_38269243
seq2: B6Ng01-229E22.b_254_618 (reverse)

seq1  TGTGATGGTTTGTATGTCCTTGGACCAGGTAGTGGCACCATCTGAAGGTG  50
      ||||||||||||||| | |||||| ||||  |||||||||| ||  ||| 
seq2  TGTGATGGTTTGTATATTCTTGGATCAGGGCGTGGCACCATTTGGCGGTA  50

seq1  TGGCCTTGTTGGAATAGGCGTGACCTGGTTGGAAAGGGTGTGTCACTGTG  100
      |||||||||||||||||| ||||||||||||||   ||||||||||||||
seq2  TGGCCTTGTTGGAATAGGTGTGACCTGGTTGGAGTAGGTGTGTCACTGTG  100

seq1  GGTGTGGGTATAAGATCCTCACCCTAGTTGCCTGGAAGTCAGTCTTCCAC  150
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  GGTGTGGGCATAAGATCCTCACCCTAGCTGCCTGGAAGTCAGTCTTCCAC  150

seq1  TAGCAGCCTTTGGATGAAGGCATAGAACTCTCAGCTCCTCCTGCACCATG  200
      |||||||||||||||||||   |||||||||||||||  ||||  |||||
seq2  TAGCAGCCTTTGGATGAAGATGTAGAACTCTCAGCTCTGCCTGTGCCATG  200

seq1  CCTGCCTGGATACTGCCATGTTCCCACCTTGATGATAATGGACTGAACCT  250
      |||| ||||||||||||| |||||  |||||||| |||||||| | ||||
seq2  CCTGTCTGGATACTGCCACGTTCCTGCCTTGATGGTAATGGACAG-ACCT  249

seq1  CTGAACCTGTAAGCCAGCCCCAATTAAATGTTG-----------------  283
      |||||||||||||||||||||||||||||||||                 
seq2  CTGAACCTGTAAGCCAGCCCCAATTAAATGTTGTTTTTTTTTTTTTTTTT  299

seq1  --TTTTTTTATAAGACTTGCCTTGGTCATGGTGTCTGTTCACAGCAGTAA  331
        ||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  TTTTTTTTTATAAGACTTGTCGTGGTCATGGTGTCTGTTCACAGCAGTAA  349

seq1  AACCCTGACTAAGACA  347
      |||||  |||||||||
seq2  AACCCCAACTAAGACA  365

seq1: chr14_122055064_122056083
seq2: B6Ng01-229E22.g_65_1091

seq1  GAATTCACCACCATGTCCGCAATCCCCTCCTACAACAAATCAATAATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACCATGTCCGCAATCCCCTCCTACAACAAATCAATAATTCT  50

seq1  TTTTTTAATTATAGAGAGATGACCACAAAAATCAGACGCCCCTAAACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATTATAGAGAGATGACCACAAAAATCAGACGCCCCTAAACACA  100

seq1  ATGGAGTTGAGAAGACGCTGTGATGCTTCTGATGTTAAGGACTTTTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTTGAGAAGACGCTGTGATGCTTCTGATGTTAAGGACTTTTGGGG  150

seq1  ATTCCTAAATAAATAAATAAATAAATAAGCCAGACAGACAGACAGACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAAATAAATAAATAAATAAATAAGCCAGACAGACAGACAGACAGC  200

seq1  TGGCCAAGTACACCTAGAATAAAAGGAATTTGCCAACAAAGTAACTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAGTACACCTAGAATAAAAGGAATTTGCCAACAAAGTAACTCAAA  250

seq1  AAGTTACCAACTATTCTGTATAGAGTTCCTTAGGCAGATACTAAAAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACCAACTATTCTGTATAGAGTTCCTTAGGCAGATACTAAAAGGGT  300

seq1  CTCCTCCAAATTAAAAAATTAAAGAAAACCATAATAACAACAAACAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCAAATTAAAAAATTAAAGAAAACCATAATAACAACAAACAGAAG  350

seq1  AGGAGAGCAGAGGGTGGCGATGTCGGTCCATTGGTAGAGTGCTCATCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGCAGAGGGTGGCGATGTCGGTCCATTGGTAGAGTGCTCATCCAG  400

seq1  CAAGCCTGAGGCCCAGGGCTGGATCCCCAGCAGTGCACAAGTGTGCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGAGGCCCAGGGCTGGATCCCCAGCAGTGCACAAGTGTGCATGG  450

seq1  TTGCCTGCCTCTCTGGGCAGCACGTGGGAGGAGAAGCAGGAGGATCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGCCTCTCTGGGCAGCACGTGGGAGGAGAAGCAGGAGGATCAGAA  500

seq1  GGACCGGGTCACCTTCTACTTGTTTTGAGGCCAGCCTAGACTACGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGGGTCACCTTCTACTTGTTTTGAGGCCAGCCTAGACTACGTGAGA  550

seq1  CACAATACATAAAGGAGCACAGCAACAGGGTCCTGGAAGCAGAGCGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATACATAAAGGAGCACAGCAACAGGGTCCTGGAAGCAGAGCGTCCT  600

seq1  ATATGGTAAGGAAGGGGAAGAGAAAGGGTTTACAGGAGCAGCTCTGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTAAGGAAGGGGAAGAGAAAGGGTTTACAGGAGCAGCTCTGAGGG  650

seq1  TGGAGGCAGTCATCAGTCTAGGATGGTCCTGCCTTCTAGCACAGGAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAGTCATCAGTCTAGGATGGTCCTGCCTTCTAGCACAGGAGCCA  700

seq1  TGGATAAGGGGTGAGGTGTAAGCACCTGCAACTAAAGAAAGCTGAAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAGGGGTGAGGTGTAAGCACCTGCAACTAAAGAAAGCTGAAAATG  750

seq1  ACTGCTTCAGATGTGCAGGCGTGCAGGGGTGCGGGTATGCAGGGGTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTGCTTCAGATGTGCAGGCGTGCAGGGGTGCGGGTATGCA-GGGTGCAG  799

seq1  GTATGCAGGGGTGCAGGGGTACAGGGGTGCGGATATGCAGGGGTAT-AGG  849
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  GTATGCA-GGGTGCAGGGGTACAGGGGTGCGGATATGCAGGGGTATAAGG  848

seq1  CGTGCAGGGGTGCGGGTATGCAGGGGTACAGGGGTGCGGATATGCAGGGG  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CGTGCAGGGGTGCGGGTATGCAAGGGTACAGGGGTGCGGATATGCAGGGG  898

seq1  TA-TTGGCATGCAGGGGTGCGCGGGTGCAGGTATGCAGGGGTGCAGCACC  948
      || ||||||||||||||||| ||||||||||||||||||| |||| || |
seq2  TATTTGGCATGCAGGGGTGCCCGGGTGCAGGTATGCAGGGTTGCAACA-C  947

seq1  TCAG-CTCTCTCT-GTTGCGATGAGAT-GAGAT-GAGCA-TATTTACTAG  993
      |||| |||||||| ||||||||||||| ||||| ||||| |||| |||||
seq2  TCAGCCTCTCTCTGGTTGCGATGAGATGGAGATGGAGCATTATTAACTAG  997

seq1  AGGGT-GACGATGCAATTGGA--TTTTAGG  1020
      ||||| |||||||||| ||||   ||||||
seq2  AGGGTGGACGATGCAACTGGAATCTTTAGG  1027