BAC Information

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BAC

Clone NameB6Ng01-230F11
Chromosome14 (Build37)14 (Build37)
Map Location 44,059,001 - 44,060,03944,834,354 - 44,835,353
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik
Downstream geneLOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230F11.bB6Ng01-230F11.g
ACCGA043229GA043230
length1,0311,003
definitionB6Ng01-230F11.b B6Ng01-230F11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,059,001 - 44,060,039)(44,834,354 - 44,835,353)
sequence
gaattcattcagtggtttttaagcttttcccatgttattttatttctgga
ttatcaaattgactctgtttctttgttttctggagatcatgtgcagattt
tgaaatgataatcccactcaatcttatataaaagcactaagattagtggt
cctgaaactacttagcagttactcaacatcctgtaggaagacaaaacaca
aaattaagtacatataatgggggacaatttactccaaaagagagagcagg
gtttatagagaagagcaaatagccaataaggctcagaaaccagtggggct
ctgcagtctggaaatgggacaacaatgtatggttcggtgccattcctgac
agaccaggtcagaattcatcctcatccttagggaataagccacctctaga
tgaaaattaaaattgtttccttcaactaccttcccagcacacaaagaaac
ctatcttgatttatacaatgacacacaggttaggaagattagccaagatc
ttctcaagtctcataatctctggataatttagaagttcagtttattgatt
attttaaaaatatttttaataaattattttctttatttacatttcaaatg
ttttcccatttcctggtttctcatatgaaaaccccatatcccctacccac
ttcccctgctcactgaccaatctactccagctccctggtactggcattac
cctacattaggacattgagccttcacaggattaaggtcatcttctctcat
tgataaccaacaaagccatcctctgctaaatatgcagctagagaaatggt
tccctccatgtactcttgggctagtgctttagtccctaggatcactgggg
gtactggtttggttcatattgttcctcctatggggctgcaaaaccctcca
gtaccttggtcctttctctatctccacttctgcagtccctgtgatcagtc
caatgttgctgagagcatcctcctcagtatttgacagcactgacagagtc
tctcagagatagctatacagctctgtcagca
gaattctttgcatacttctatgactgtgaaagactggggaaattcctagg
aactggaatgtgaagtgagactaagtacaaggtctattggcacagaaatc
aaatgttgaaacagcttagaagacagatcaggacaaaatatattgagaac
agactgatgctggggagtcaatgaacaatccagagaacattgcatcagta
agaaaggagcagggaggagaggtacttggggaggtcttgaagttagtctt
tgctaaaattgagtaaaaaatcattttttcatattcggtacattcataca
ggaaaggaggagatgactcagtcactaaagatcctgagaggacacactga
gctggcattcatgaactctccattgttcagtaagaacaactgcacttgat
taagatgcttacatgacctttacacccagcacttctctccctgctactat
ctgtcatggtggaggtttttcttagggctgtctcttctgagctgtcagga
cactggcaggcttttcctatcacctgttatggtctcaacaaagtctccgc
tcaccagccagaaaatctcttcttgtaatttcagcctcattgtgaggtag
caagagagtggaaacaatctacaacattacagatgttgcctttggaaggc
aatgtgggttagataatgtcatcagagtaaattcttgctttttgcaaaag
ccttctaaacaaatggttccctaggatagtttcccaaccagagcgcggga
tagcatgtggattatgtatttgcaatatggtgtgtgggtgacaggcagct
gattttagatagtcttaagtagccagggctggtctttgtacacaacccac
taacgtggtcatggttgactttggatcctatagtcagcctaataatttgg
aatatcaattaattagaaccacttcttcattttctaaatattaagtggtt
caagtctaaaatagtctaccttctgccttcctctaggtagtatggaaata
ttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44059001_44060039
seq2: B6Ng01-230F11.b_46_1076

seq1  GAATTCATTCACTGGTTTTTAAGCTTTCCCCATGTTATTTTATTTCTGGA  50
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCATTCAGTGGTTTTTAAGCTTTTCCCATGTTATTTTATTTCTGGA  50

seq1  TTATCAAATTGACTCCTTTTCTTTGTTTTCTGGAGATCATGTGCAGATTT  100
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  TTATCAAATTGACTCTGTTTCTTTGTTTTCTGGAGATCATGTGCAGATTT  100

seq1  TGAAATGATAATCCCACTCAATCTTATATAAAAGCACTAAGATTAGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGATAATCCCACTCAATCTTATATAAAAGCACTAAGATTAGTGGT  150

seq1  CCTGAAACTACTTAAGCAGTTACTCAACATCCTGTAGGAAGACAAAACAC  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACTACTT-AGCAGTTACTCAACATCCTGTAGGAAGACAAAACAC  199

seq1  AAAATTAAGTACATATAATAGGGGACAATTTACTCCAAAA-AGAAAGCAG  249
      ||||||||||||||||||| |||||||||||||||||||| ||| |||||
seq2  AAAATTAAGTACATATAATGGGGGACAATTTACTCCAAAAGAGAGAGCAG  249

seq1  GGTTTGTAGACAAGAGCAAATAGCCAATAAGGCTCAGAAACCAGTGGGGC  299
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATAGAGAAGAGCAAATAGCCAATAAGGCTCAGAAACCAGTGGGGC  299

seq1  TCTGCAGCCTGGAAATGGGAAACCAATGTATGGTTCCATGCCATTCCTGA  349
      ||||||| |||||||||||| | |||||||||||||  ||||||||||||
seq2  TCTGCAGTCTGGAAATGGGACAACAATGTATGGTTCGGTGCCATTCCTGA  349

seq1  CAGACCAGGTCAGAATTCCTCCTCATCCTTAGGGAATAAGCCACCTGCAG  399
      |||||||||||||||||| |||||||||||||||||||||||||||  ||
seq2  CAGACCAGGTCAGAATTCATCCTCATCCTTAGGGAATAAGCCACCTCTAG  399

seq1  ATGAAAATTAAAATTGTTTACTTCAACTACCCTCCCCAGCACATAAAGTA  449
      ||||||||||||||||||| ||||||||| ||| ||||||||| |||| |
seq2  ATGAAAATTAAAATTGTTTCCTTCAACTA-CCTTCCCAGCACACAAAGAA  448

seq1  ACCTGTCTTGATTTATACAATGACACACAGGTTAGGAAGATTAGCCAAGA  499
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCTTGATTTATACAATGACACACAGGTTAGGAAGATTAGCCAAGA  498

seq1  TCTTCTCAAGTCTCATAGTCTCTGAATAATTTAGAAGTTCAGTTTATTTA  549
      ||||||||||||||||| |||||| ||||||||||||||||||||||| |
seq2  TCTTCTCAAGTCTCATAATCTCTGGATAATTTAGAAGTTCAGTTTATTGA  548

seq1  TTATTTTTAAAATATTTTTAATTACTTATTTTCTTTATTTACATTTCAAA  599
      ||||||| |||||||||||||| | |||||||||||||||||||||||||
seq2  TTATTTTAAAAATATTTTTAATAAATTATTTTCTTTATTTACATTTCAAA  598

seq1  TGTTTTCCCATTTCCTGGTTTCTCATATGAAAACCCCCTATCCCCTACCC  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTTTTCCCATTTCCTGGTTTCTCATATGAAAACCCCATATCCCCTACCC  648

seq1  ACTCCCCCTGCTCACTGACCAACCTACTCCTGGTCCCTGGTCCTGGCATT  699
      ||| |||||||||||||||||| ||||||| | |||||||| ||||||||
seq2  ACTTCCCCTGCTCACTGACCAATCTACTCCAGCTCCCTGGTACTGGCATT  698

seq1  CCCCTACATTAGGGCATTGAGCCTTCACAGGATTAAGGTCATCTTCTCTC  749
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACCCTACATTAGGACATTGAGCCTTCACAGGATTAAGGTCATCTTCTCTC  748

seq1  ATTGATGACCAACAAAGCCATCCTCTGCTAAATATGCAGCTAGAGAAATG  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAACCAACAAAGCCATCCTCTGCTAAATATGCAGCTAGAGAAATG  798

seq1  GTTCTCTCCATATGTACTCTTGGGC-AGTGCTTTAGTCCCTAAGATCACT  848
      |||| ||||  |||||||||||||| |||||||||||||||| |||||||
seq2  GTTCCCTCC--ATGTACTCTTGGGCTAGTGCTTTAGTCCCTAGGATCACT  846

seq1  -GGGGTACTGG-TTGGTTCATATTGTTCCTCCTATGTGGCTGCAAAACCC  896
       |||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  GGGGGTACTGGTTTGGTTCATATTGTTCCTCCTATGGGGCTGCAAAACCC  896

seq1  CTCAGTACCTTGGGTCCTTTCTCTATCTCCACTTCTGCAGTCCCTGTGAT  946
        ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTACCTT-GGTCCTTTCTCTATCTCCACTTCTGCAGTCCCTGTGAT  945

seq1  CAGTCCAATGGTTGGCTGAGAGCATCCTCCTCAGTATTTGACAGGCACTG  996
      ||||||||||  | ||||||||||||||||||||||||||||| ||||||
seq2  CAGTCCAATG--TTGCTGAGAGCATCCTCCTCAGTATTTGACA-GCACTG  992

seq1  ACAGAGTCTCTCAGGAGATAGCTATACCAGGCTCTGGTCAGCA  1039
      ||||||||||||| |||||||||||||   ||||| |||||||
seq2  ACAGAGTCTCTCA-GAGATAGCTATAC--AGCTCT-GTCAGCA  1031

seq1: chr14_44834354_44835353
seq2: B6Ng01-230F11.g_68_1067

seq1  GAATTCTTTGCATACTTCTATGACTGTGAAAGACTGGGGAAATTCCTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCATACTTCTATGACTGTGAAAGACTGGGGAAATTCCTAGG  50

seq1  AACTGGAATGTGAAGTGAGACTAAGTACAAGGTCTATTGGCACAGAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAATGTGAAGTGAGACTAAGTACAAGGTCTATTGGCACAGAAATC  100

seq1  AAATGTTGAAACAGCTTAGAAGACAGATCAGGACAAAATATATTGAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGAAACAGCTTAGAAGACAGATCAGGACAAAATATATTGAGAAC  150

seq1  AGACTGATGCTGGGGAGTCAATGAACAATCCAGAGAACATTGCATCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATGCTGGGGAGTCAATGAACAATCCAGAGAACATTGCATCAGTA  200

seq1  AGAAAGGAGCAGGGAGGAGAGGTACTTGGGGAGGTCTTGAAGTTAGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAGCAGGGAGGAGAGGTACTTGGGGAGGTCTTGAAGTTAGTCTT  250

seq1  TGCTAAAATTGAGTAAAAAATCATTTTTTCATATTCGGTACATTCATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAATTGAGTAAAAAATCATTTTTTCATATTCGGTACATTCATACA  300

seq1  GGAAAGGAGGAGATGACTCAGTCACTAAAGATCCTGAGAGGACACACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAGGAGATGACTCAGTCACTAAAGATCCTGAGAGGACACACTGA  350

seq1  GCTGGCATTCATGAACTCTCCATTGTTCAGTAAGAACAACTGCACTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCATTCATGAACTCTCCATTGTTCAGTAAGAACAACTGCACTTGAT  400

seq1  TAAGATGCTTACATGACCTTTACACCCAGCACTTCTCTCCCTGCTACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGCTTACATGACCTTTACACCCAGCACTTCTCTCCCTGCTACTAT  450

seq1  CTGTCATGGTGGAGGTTTTTCTTAGGGCTGTCTCTTCTGAGCTGTCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGGTGGAGGTTTTTCTTAGGGCTGTCTCTTCTGAGCTGTCAGGA  500

seq1  CACTGGCAGGCTTTTCCTATCACCTGTTATGGTCTCAACAAAGTCTCCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCAGGCTTTTCCTATCACCTGTTATGGTCTCAACAAAGTCTCCGC  550

seq1  TCACCAGCCAGAAAATCTCTTCTTGTAATTTCAGCCTCATTGTGAGGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGCCAGAAAATCTCTTCTTGTAATTTCAGCCTCATTGTGAGGTAG  600

seq1  CAAGAGAGTGGAAACAATCTACAACATTACAGATGTTGCCTTTGGAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGTGGAAACAATCTACAACATTACAGATGTTGCCTTTGGAAGGC  650

seq1  AATGTGGGTTAGATAATGTCATCAGAGTAAATTCTTGCTTTTTGCAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGTTAGATAATGTCATCAGAGTAAATTCTTGCTTTTTGCAAAAG  700

seq1  CCTTCTAAACAAATGGTTCCCTAGGATAGTTTCCCAACCAGAGCGCGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAAACAAATGGTTCCCTAGGATAGTTTCCCAACCAGAGCGCGGGA  750

seq1  TAGCATGTGGATTATGTATTTGCAATATGGTGTGTGGGTGACAGGCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGTGGATTATGTATTTGCAATATGGTGTGTGGGTGACAGGCAGCT  800

seq1  GATTTTAGATAGTCTTAAGTAGCCAGGGCTGGTC-TTGTACACAACCCAC  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GATTTTAGATAGTCTTAAGTAGCCAGGGCTGGTCTTTGTACACAACCCAC  850

seq1  TAACGTGGTCATGGTTGACTTTGGATCCTAATAGTCAGCCTAAATATTT-  898
      ||||||||||||||||||||||||||||| |||||||||||||  |||| 
seq2  TAACGTGGTCATGGTTGACTTTGGATCCT-ATAGTCAGCCTAATAATTTG  899

seq1  GAATATCAATAATTAAGAACCACTTCTTCA-TTTCTAAAATTATTAAGTG  947
      |||||||||| | | ||||||||||||||| ||||||||  |||||||||
seq2  GAATATCAATTAATTAGAACCACTTCTTCATTTTCTAAA--TATTAAGTG  947

seq1  TTTCAAGTCTAAAATAGTTTACCTT-TGCCTTCTCTTAAGTTAGTATGTA  996
       ||||||||||||||||| |||||| ||||||| ||  || ||||||| |
seq2  GTTCAAGTCTAAAATAGTCTACCTTCTGCCTTC-CTCTAGGTAGTATGGA  996

seq1  AATA  1000
      ||||
seq2  AATA  1000