BAC Information

Click to search

BAC

Clone NameB6Ng01-230H20
Chromosome14 (Build37)
Map Location 116,384,135 - 116,385,263
singlet/doubletsinglet
Overlap geneGpc5
Upstream genenone
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230H20.bB6Ng01-230H20.g
ACCGA043341GA043342
length1,1491,124
definitionB6Ng01-230H20.b B6Ng01-230H20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttaaagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcac
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtatttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgtgttggaatttt
gatgggaattgcattgaatctgtagattgcttatggcaagatagccattt
ttacaatgttgatccctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttcttcagagacttgaagtttttatcat
acagatcttcactttccttagtagagtcacgccaagatattttaatatta
tttgtgactattgagaagggtgtgtttcccctaatttcctttctcagcct
gttattctttggtgtagagaaggccattggacttgttggagttatttata
tccagctactcacgaaagctgctatccaggtttagggagttctctggggg
aaattttctagggccactatatatataccataatccatatatacattct

gaattcaagccttcatgcttatcacacttgcaagacaagctcttaaccct
aggaaccatgactgtaggcagaaaatatactgcttattgagcaatttttt
caaatataggcactttgaaattaatacttaatacaaaaccttatcattcc
ttcatgtgagaagaacttatattactgtgttcttatactacaaatgtcat
taaacatatgagataggtaaaatactctaatctgcagctgaaataacttc
taaaaccaaattcaagttatcacacagaatgtaacttattaacagaaaat
gcaaacaaaagttctatttgattcttctttgttctaatttgatatgaaat
gtattacgctcatatatcaaaatcatatcaacgagttaaaaattccaaag
ggaatttgagagaaagagaaaaatagctggaacttattagtatactaatg
aatattcagtgtgaataatcaattacttaaagtgtgaagaagataataca
tatgaaagccaaaaaggaaaccagtacaaataagaaaaatggccaaacac
ccgcctcatctcaacagccatttgtcagcacttcctaacatcatcacctt
tacacttctggtttgggagctagagatgttctagtgtgtgaaagtgctgt
gcacgaaattgaatctcccaagttttcctaaaagctgggcccttaattag
agcctctgcagtcagcagtcgcagatctcctacagatacttgggaggtgg
agataggagagcccttgttagcttctgaacctgcaaatgggtatacacag
aggattatgcaagaaggtcctgtctcaaacgaggtaggaaacagggatct
ataactgatttgtcctgtgccttgcatgtgcacagtatcatgcatacatg
tgcgttgacatacatggatgcacaagcacatccacacacctggcacatac
aagcatgcataccatattttaaatatgcaacccagatggagtctttagtc
atggcatcgctatctgggctatgttctaatagtttttccccagttagcaa
atcccatactacatagtgttagtgtttttgatccaagacatatcatacat
ctatgaaacaattgaaaagcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_116384135_116385263
seq2: B6Ng01-230H20.g_67_1190 (reverse)

seq1  CAGTGCCTTTTCATTTTTGTTTTTCAATAGATGTATGATATGTCTTGTGA  50
      ||||| |||||||   ||||||    ||||||||||||||||||||| ||
seq2  CAGTG-CTTTTCA--ATTGTTT---CATAGATGTATGATATGTCTTG-GA  43

seq1  TCAAAAACACT-ACACTATGTAGTATTGGGGATTTGCTTAACTGGGG-AA  98
      ||||||||||| ||||||||||||||  ||||||||| ||||||||| ||
seq2  TCAAAAACACTAACACTATGTAGTAT--GGGATTTGC-TAACTGGGGAAA  90

seq1  AACTATTAGAACATAG-CCAGATAGCGATG-CATGACT-AAGACTCCATC  145
      |||||||||||||||| ||||||||||||| ||||||| |||||||||||
seq2  AACTATTAGAACATAGCCCAGATAGCGATGCCATGACTAAAGACTCCATC  140

seq1  TGGGTTGCATATTTTAAAATATGGTATGCATGCTTGTATGTGCCAGGTGT  195
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGCATA-TTTAAAATATGGTATGCATGCTTGTATGTGCCAGGTGT  189

seq1  GTGGATGTGCTTGTGCATCCATGTATGTCAACGCACATGTATGCATGATA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGTGCTTGTGCATCCATGTATGTCAACGCACATGTATGCATGATA  239

seq1  CTGTGCACATGCAAGGCACAGGAC-AATCAGTTATAGATCCCTGTTTCCT  294
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGTGCACATGCAAGGCACAGGACAAATCAGTTATAGATCCCTGTTTCCT  289

seq1  ACCTCGTTTGAGACAGGACCTTCTTGCATAATCCTCTGTGTATACCCATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGTTTGAGACAGGACCTTCTTGCATAATCCTCTGTGTATACCCATT  339

seq1  TGCAGGTTCAGAAGCTAACAAGGGCTCTCCTATCTCCACCTCCCAAGTAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTTCAGAAGCTAACAAGGGCTCTCCTATCTCCACCTCCCAAGTAT  389

seq1  CTGTAGGAGATCTGCGACTGCTGACTGCAGAGGCTCTAATTAAGGGCCCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGAGATCTGCGACTGCTGACTGCAGAGGCTCTAATTAAGGGCCCA  439

seq1  GCTTTTAGGAAAACTTGGGAGATTCAATTTCGTGCACAGCACTTTCACAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAGGAAAACTTGGGAGATTCAATTTCGTGCACAGCACTTTCACAC  489

seq1  ACTAGAACATCTCTAGCTCCCAAACCAGAAGTGTAAAGGTGATGATGTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAACATCTCTAGCTCCCAAACCAGAAGTGTAAAGGTGATGATGTTA  539

seq1  GGAAGTGCTGACAAATGGCTGTTGAGATGAGGCGGGTGTTTGGCCATTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGCTGACAAATGGCTGTTGAGATGAGGCGGGTGTTTGGCCATTTT  589

seq1  TCTTATTTGTACTGGTTTCCTTTTTGGCTTTCATATGTATTATCTTCTTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTGTACTGGTTTCCTTTTTGGCTTTCATATGTATTATCTTCTTC  639

seq1  ACACTTTAAGTAATTGATTATTCACACTGAATATTCATTAGTATACTAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAAGTAATTGATTATTCACACTGAATATTCATTAGTATACTAAT  689

seq1  AAGTTCCAGCTATTTTTCTCTTTCTCTCAAATTCCCTTTGGAATTTTTAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCAGCTATTTTTCTCTTTCTCTCAAATTCCCTTTGGAATTTTTAA  739

seq1  CTCGTTGATATGATTTTGATATATGAGCGTAATACATTTCATATCAAATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTGATATGATTTTGATATATGAGCGTAATACATTTCATATCAAATT  789

seq1  AGAACAAAGAAGAATCAAATAGAACTTTTGTTTGCATTTTCTGTTAATAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAGAAGAATCAAATAGAACTTTTGTTTGCATTTTCTGTTAATAA  839

seq1  GTTACATTCTGTGTGATAACTTGAATTTGGTTTTAGAAGTTATTTCAGCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATTCTGTGTGATAACTTGAATTTGGTTTTAGAAGTTATTTCAGCT  889

seq1  GCAGATTAGAGTATTTTACCTATCTCATATGTTTAATGACATTTGTAGTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTAGAGTATTTTACCTATCTCATATGTTTAATGACATTTGTAGTA  939

seq1  TAAGAACACAGTAATATAAGTTCTTCTCACATGAAGGAATGATAAGGTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACACAGTAATATAAGTTCTTCTCACATGAAGGAATGATAAGGTTT  989

seq1  TGTATTAAGTATTAATTTCAAAGTGCCTATATTTGAAAAAATTGCTCAAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAGTATTAATTTCAAAGTGCCTATATTTGAAAAAATTGCTCAAT  1039

seq1  AAGCAGTATATTTTCTGCCTACAGTCATGGTTCCTAGGGTTAAGAGCTTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTATATTTTCTGCCTACAGTCATGGTTCCTAGGGTTAAGAGCTTG  1089

seq1  TCTTGCAAGTGTGATAAGCATGAAGGCTTGAATTC  1129
      |||||||||||||||||||||||||||||||||||
seq2  TCTTGCAAGTGTGATAAGCATGAAGGCTTGAATTC  1124


| Home | SequenceCutter | Blast | Download |