BAC Information

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BAC

Clone NameB6Ng01-230M11
Chromosome14 (Build37)
Map Location 118,118,407 - 118,119,546
singlet/doubletsinglet
Overlap geneGpc6
Upstream genenone
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230M11.bB6Ng01-230M11.g
ACCGA043556GA043557
length1,1381,230
definitionB6Ng01-230M11.b B6Ng01-230M11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcatgcttcttctgggtcagttacactaatgacataaatccag
agaagagtggtcggccagggagggaaagaggccagaggatctcttctctc
tcagttgcctcttaaaatggcaactactacaactcccattgtttcctctg
ttgtccctgctgtacctggagactctggcttctttttatgatcacccccc
cctcgctctaagccttaggtaccaggaaaattaggggctacctttgccta
tttctaaatcatcattcctcctccttcatttcctagcccctctgtcacct
ctataactctttctctatactgaatgtcatgcacatgaaaaaaactactc
tctagcgtggcttctggattctagttaatctctgactaatagggacagtc
aacagctgaagctggaaggttttactggacccttgcagggctctgatgat
tcaaaagccatatggacatcaagacagatgaggtcaacaatatattgaaa
gcatactggtgcagggatgaaaaatcaccccattctccttctaggaagag
tagttactatcctgtatttctttgccttgtttccggaataaaatatctgg
gctcttaacatgcagcaacatgaatatgtctcagacatatcgtgctaagt
aaagaaggaagggactgtggggtagttttattaaggttcatgtatatgtg
tctagcttgtgaaaataataatgatggtggttgtcttgatggaggaaaag
gacagcgtgaaaacaaggaggtcttctaaggagatggcagctgactgggg
agccctttatgtgtgtgcatatatggtaaaccttgcaaacactacactcc
agatatgggttctgtgggtggtgtaattatactgaaatgtgtatactgta
aaaaatatcacttggaaaaggtagtttacttcataatttacttgatttaa
atagaggactgggttggtatgtcttaaagatcattttaattctaaattca
gttattcgcttatgagaaagttgtataatgaatgaagggaaagtgaaatg
gaagtggactagaaagggcaagtaattgaaaagagtttatatttaacttt
tactggagttaatgctgaacttgttaagaaggtgaaac
gaattcttcccccacctgatagtcaatcagcttatgtgccaaaaaacggg
tcatcgggccctcggtcccagggccctcaaagatatgggaaccggtttgt
caggacccaggaagcagtcagagaggcgacccaggaagacccacaagggt
ggacctgcgtgccgcctccgacttcctattaatgcctcaaatgagtattc
agccggtgccagtggagcctataccatccttgcccccgggaaccatgggc
cttattctcggccggggttcactcaccttacagggcttagtagtccaccc
tggagttatggattgtcaacattcccctaaaatacaggtcctgtgctcaa
gccctaaaggcgttttttctattagtaaaggagataggatagctcagctg
ctgctcctccctgataataccagggagaaatttgcaggacctgagataaa
gaaaatgggctcctcaggaaatgattctgcctatttggttgtatctttga
atgatagacctaagctccgccttaagatcaacggaaaagagtttgaaggc
atccttgataccggagcagataaaagtataatttctacacattggtggcc
caaagcatggcccaccacagagtcatctcattcattacagggcctaggtt
atcaatcatgtcccactataagctccattgccttgacgtgggaatcctct
gaagggcagcaagggaaattcataccttatgtgctcccactcccggttaa
cctctggggaagggatattatgcagcatttgggccttattttgtccaatg
aaaacgccccatcgggagggtattcagctaaagcaaaaaatatcatggca
aagatgggttataaagaaaggaaaagggttaggacatcaagaacagggaa
ggatagagctcatctcacctaatggaaaccaagacagacagggttctggg
ttttccttagtggccattggggcagcacgatccataccatggaaaacagg
gacccaatgtgggttcctcaatggcccctatccttctgaaaaactagaag
ctgtgattcaactgctagaagaacattaaaactaagccatatttgaccct
tctacctccacttggaatactccaatttttgtaatagaaaaaagtcagga
aagtgacacttgttctcatgaccttggacattatgacaatggaccttatt
gcccagacacacaagggttctcctcctcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118118407_118119546
seq2: B6Ng01-230M11.b_50_1187

seq1  GAATTCCTCATGCTTCTTCTGGGTCAGTTACACTAATGACATAAATCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATGCTTCTTCTGGGTCAGTTACACTAATGACATAAATCCAG  50

seq1  AGAAGAGTGGTCGGCCAGGGAGGGAAAGAGGCCAGAGGATCTCTTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTGGTCGGCCAGGGAGGGAAAGAGGCCAGAGGATCTCTTCTCTC  100

seq1  TCAGTTGCCTCTTAAAATGGCAACTACTACAACTCCCATTGTTTCCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGCCTCTTAAAATGGCAACTACTACAACTCCCATTGTTTCCTCTG  150

seq1  TTGTCCCTGCTGTACCTGGAGACTCTGGCTTCTTTTTATGATCACCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTGCTGTACCTGGAGACTCTGGCTTCTTTTTATGATCACCCCCC  200

seq1  CCTCGCTCTAAGCCTTAGGTACCAGGAAAATTAGGGGCTACCTTTGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCTCTAAGCCTTAGGTACCAGGAAAATTAGGGGCTACCTTTGCCTA  250

seq1  TTTCTAAATCATCATTCCTCCTCCTTCATTTCCTAGCCCCTCTGTCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAATCATCATTCCTCCTCCTTCATTTCCTAGCCCCTCTGTCACCT  300

seq1  CTATAACTCTTTCTCTATACTGAATGTCATGCACATGAAAAAAACTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTCTTTCTCTATACTGAATGTCATGCACATGAAAAAAACTACTC  350

seq1  TCTAGCGTGGCTTCTGGATTCTAGTTAATCTCTGACTAATAGGGACAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCGTGGCTTCTGGATTCTAGTTAATCTCTGACTAATAGGGACAGTC  400

seq1  AACAGCTGAAGCTGGAAGGTTTTACTGGACCCTTGCAGGGCTCTGATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGAAGCTGGAAGGTTTTACTGGACCCTTGCAGGGCTCTGATGAT  450

seq1  TCAAAAGCCATATGGACATCAAGACAGATGAGGTCAACAATATATTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCCATATGGACATCAAGACAGATGAGGTCAACAATATATTGAAA  500

seq1  GCATACTGGTGCAGGGATGAAAAATCACCCCATTCTCCTTCTAGGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTGGTGCAGGGATGAAAAATCACCCCATTCTCCTTCTAGGAAGAG  550

seq1  TAGTTACTATCCTGTATTTCTTTGCCTTGTTTCCGGAATAAAATATCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTATCCTGTATTTCTTTGCCTTGTTTCCGGAATAAAATATCTGG  600

seq1  GCTCTTAACATGCAGCAACATGAATATGTCTCAGACATATCGTGCTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAACATGCAGCAACATGAATATGTCTCAGACATATCGTGCTAAGT  650

seq1  AAAGAAGGAAGGGACTGTGGGGTAGTTTTATTAAGGTTCATGTATATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGAAGGGACTGTGGGGTAGTTTTATTAAGGTTCATGTATATGTG  700

seq1  TCTAGCTTGTGAAAATAATAATGATGGTGGTTGTCTTGATGGAGGAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTTGTGAAAATAATAATGATGGTGGTTGTCTTGATGGAGGAAAAG  750

seq1  GACAGCGTGAAAACAAGGAGGTCTTCTAAGGAGATGGCAGCTGACTGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCGTGAAAACAAGGAGGTCTTCTAAGGAGATGGCAGCTGACTGGGG  800

seq1  AGCCCTTTATGTGTGTGCATATATGGTAAACCTTGCAAACACTACACTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTTATGTGTGTGCATATATGGTAAACCTTGCAAACACTACACTCC  850

seq1  AGATATGGGTTCTGTGGGTGGTGTAATTATACTGAAATGTGTATACTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGGGTTCTGTGGGTGGTGTAATTATACTGAAATGTGTATACTGTA  900

seq1  AAAAATATCAC-TGGAAAAGGTAG-TTACTTCAT-ATTTACTTGA-TTAA  946
      ||||||||||| |||||||||||| ||||||||| |||||||||| ||||
seq2  AAAAATATCACTTGGAAAAGGTAGTTTACTTCATAATTTACTTGATTTAA  950

seq1  ATAGAGGACTGGGTT-GTATGTCTTAAAGATCATTTTAATTCTAAAATTC  995
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  ATAGAGGACTGGGTTGGTATGTCTTAAAGATCATTTTAATTCT-AAATTC  999

seq1  AGTTATTCGCTATTGAAGAAAG-TGTATAAATGAAAGGAAAGGGAAAGTT  1044
      |||||||||||  || |||||| ||||| |||||| |  ||||||||| |
seq2  AGTTATTCGCTTATG-AGAAAGTTGTAT-AATGAATG--AAGGGAAAG-T  1044

seq1  GAAATGGAGGTGGACTAGAAAGGGCCAAAGTTATTGAAAAGAGTTTATAT  1094
      |||||||| ||||||||||||||||  |||| ||||||||||||||||||
seq2  GAAATGGAAGTGGACTAGAAAGGGC--AAGTAATTGAAAAGAGTTTATAT  1092

seq1  TTTAAAACTTTTACTGGAGTAAATGCTTGAC-TGTTAAGA--GTGAAAC  1140
      ||   ||||||||||||||| ||||||  || ||||||||  |||||||
seq2  TT---AACTTTTACTGGAGTTAATGCTGAACTTGTTAAGAAGGTGAAAC  1138