BAC Information

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BAC

Clone NameB6Ng01-231A20
Chromosome14 (Build37)
Map Location 118,710,100 - 118,744,467
singlet/doubletdoublet
Overlap genenone
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814
Downstream geneLOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231A20.bB6Ng01-231A20.g
ACCGA043755GA043756
length1,0971,117
definitionB6Ng01-231A20.b B6Ng01-231A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,710,100 - 118,711,192)(118,743,348 - 118,744,467)
sequence
gaattcagtgacctctacaggttcttgctgggctgctgttgtagatggca
cagccccactacagaacaaaagagcaaatagcccaggcctggggctgttc
ctctacccgtgcacactctgagcaacacccatgtgcaaacatctccactt
tgtaccattgcacccaatgctgtaagtttggttgtaatatagtttttctt
ctttgcgggcaggaggtccacacgataagttcccctcccgtattttgcta
actttgtccttctttctgcttcactggagtagtagtagcagcactgtgaa
tgaataagaccacatccgctgtctctgtctttagagacaaccaagaagca
ggaaatgtgggaagtcaggtgaccctgcagccaggtgggactaagaacac
gcgggaagaaagagaagagaagaaagtaggagggtcaggaatgtcggaag
acactcgtgatctcagcacttgggattcggagacaggaggtttgggacta
cacagtgaggacgtctcaaggatgaaatcaaaactaaaaagagaaagcaa
gcactgtttgaggtataagaacagaaaatatagataacagggaccatgtg
gttgctgggaattgaactcaggacctctagaagaacaatcagtgttctta
agcgctgagccatccctctagcctgtaatataacattttaaaggaatcca
ttcaaacttcaaaacaggaaagtctgcctctggggatctgaggtgcagat
ggtcatcaggagctgacacgctcgggtctacagctgttcactcaagagct
tcagttctttcttatacacagatggaccagccgacattcggccgtcagag
accgtgcacttctacatattcgtatttgcatctaagtttatagttcatga
aggtctatcatgacttaaaaacacacacccaaccctgactcatagcctct
gaatacaagatttttaaatctgtcaatcaaggaagttaatactaactgta
catagacctaccagcgtctacatcactaaagttactagagtaacaacgag
tcgtacaacaaaggtgacttttgttatttttttttaatttcctttta
gaattcccaacatgatctcaatgtcacagccatggcgagcaagtcctgta
tgtggacaaagggtggagatatgggtgaagtcttcacccacatatgggac
atcttctgtcacatctttccccaactgaggctccctcacagaagatgggg
cagaaagatagaaagagtcattggtcaggaaggacttcagcaaaaatagc
atcttcttagcgtaacaggaccactacagtcatgagcacacagaactgtg
gctgcctgcacaagatcaagccaggtgatggacagacagctgacagctcc
tgaaagagagcaggctttctttagggatgtgtctccaggtgggtcagtca
ttccccagcttgattaccccattctcagaggtgaacagacagcacaaaat
gaacttgctggattttaaaaacatgaaaacacaaagttgggagacaagag
ggaagtgaaggtggatctgggaggaactaggagctggaggttcctatgat
caaaatacattgaatgaaattctcaaagaattaataaagatatcttttaa
cgccctgtgtggtgaaatggcagcccagaaaacattggtcttcccacagt
tatccttggccttgaggtttctttcaaccatggattgcagctggctaagg
gaaacattgttctacccatatagtcctggtagtgcccatgtgcacaacac
agatcctttcttctacagccagctaggatcttgctctgcatgctagcata
gtagagtcctcacactgtagaggacacacagctgctggcctgtgtattaa
gtgtccatcagagaacatgtctgagaggcaaaggtacaaggactctctgg
ataactatggcagtattattttatttctcaagtaccaagaatgcactatg
tcttaaaagcacttggttggtaagatccatggttgtagggtgacattaga
aaattggaggctggacagatcttggtttcaattgcatttattttgaccct
ggctaagttattttgaaaccatccgagtctcctctccctcatctgaaatg
aagcccttttgtctctgagtactctggcagcatgggagtggatggagtgc
ctgtacaactgcaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118710100_118711192
seq2: B6Ng01-231A20.b_43_1139

seq1  GAATTCAGTGACCTCTACAGGTTCTTGCTGGGCTGCTGTTGTAGATGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGACCTCTACAGGTTCTTGCTGGGCTGCTGTTGTAGATGGCA  50

seq1  CAGCCCCACTACAGAACAAAAGAGCAAATAGCCCAGGCCTGGGGCTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCACTACAGAACAAAAGAGCAAATAGCCCAGGCCTGGGGCTGTTC  100

seq1  CTCTACCCGTGCACACTCTGAGCAACACCCATGTGCAAACATCTCCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCCGTGCACACTCTGAGCAACACCCATGTGCAAACATCTCCACTT  150

seq1  TGTACCATTGCACCCAATGCTGTAAGTTTGGTTGTAATATAGTTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCATTGCACCCAATGCTGTAAGTTTGGTTGTAATATAGTTTTTCTT  200

seq1  CTTTGCGGGCAGGAGGTCCACACGATAAGTTCCCCTCCCGTATTTTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCGGGCAGGAGGTCCACACGATAAGTTCCCCTCCCGTATTTTGCTA  250

seq1  ACTTTGTCCTTCTTTCTGCTTCACTGGAGTAGTAGTAGCAGCACTGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTCCTTCTTTCTGCTTCACTGGAGTAGTAGTAGCAGCACTGTGAA  300

seq1  TGAATAAGACCACATCCGCTGTCTCTGTCTTTAGAGACAACCAAGAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGACCACATCCGCTGTCTCTGTCTTTAGAGACAACCAAGAAGCA  350

seq1  GGAAATGTGGGAAGTCAGGTGACCCTGCAGCCAGGTGGGACTAAGAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTGGGAAGTCAGGTGACCCTGCAGCCAGGTGGGACTAAGAACAC  400

seq1  GCGGGAAGAAAGAGAAGAGAAGAAAGTAGGAGGGTCAGGAATGTCGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAAGAAAGAGAAGAGAAGAAAGTAGGAGGGTCAGGAATGTCGGAAG  450

seq1  ACACTCGTGATCTCAGCACTTGGGATTCGGAGACAGGAGGTTTGGGACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCGTGATCTCAGCACTTGGGATTCGGAGACAGGAGGTTTGGGACTA  500

seq1  CACAGTGAGGACGTCTCAAGGATGAAATCAAAACTAAAAAGAGAAAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAGGACGTCTCAAGGATGAAATCAAAACTAAAAAGAGAAAGCAA  550

seq1  GCACTGTTTGAGGTATAAGAACAGAAAATATAGATAACAGGGACCATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTTTGAGGTATAAGAACAGAAAATATAGATAACAGGGACCATGTG  600

seq1  GTTGCTGGGAATTGAACTCAGGACCTCTAGAAGAACAATCAGTGTTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGGAATTGAACTCAGGACCTCTAGAAGAACAATCAGTGTTCTTA  650

seq1  AGCGCTGAGCCATCCCTCTAGCCTGTAATATAACATTTTAAAGGAATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTGAGCCATCCCTCTAGCCTGTAATATAACATTTTAAAGGAATCCA  700

seq1  TTCAAACTTCAAAACAGGAAAGTCTGCCTCTGGGGATCTGAGGTGCAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTTCAAAACAGGAAAGTCTGCCTCTGGGGATCTGAGGTGCAGAT  750

seq1  GGTCATCAGGAGCTGACACGCTCGGGTCTACAGCTGTTCACTCAAGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCAGGAGCTGACACGCTCGGGTCTACAGCTGTTCACTCAAGAGCT  800

seq1  TCAGTTCTTTCTTATACACAGATGGACCAGCCGACATTCGGCCGTCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTTTCTTATACACAGATGGACCAGCCGACATTCGGCCGTCAGAG  850

seq1  ACCGTGCACTTCTACATATTCGTATTTGCATCTAAGTTTATAGTTCATG-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACCGTGCACTTCTACATATTCGTATTTGCATCTAAGTTTATAGTTCATGA  900

seq1  AGGTCTATCATGACTTAAAAACACACACCCAACCCTGACTCATAGCCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTATCATGACTTAAAAACACACACCCAACCCTGACTCATAGCCTCT  950

seq1  G-ATACAAGATTTTTAAATCTGTCAATCAGGGAAGTTAAATACTAACTGT  998
      | ||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  GAATACAAGATTTTTAAATCTGTCAATCAAGGAAGTT-AATACTAACTGT  999

seq1  ACATAGACCTACCAGCGTCCTACATCACTAAAGGTACTAGAGTAACAACG  1048
      |||||||||||||||||| |||||||||||||| ||||||||||||||| 
seq2  ACATAGACCTACCAGCGT-CTACATCACTAAAGTTACTAGAGTAACAAC-  1047

seq1  GAGTCGTAC-ACAAAGGTGACT----TTGTATTTTTTTAATTTCCTTTTA  1093
      ||||||||| ||||||||||||    || | |||||||||||||||||||
seq2  GAGTCGTACAACAAAGGTGACTTTTGTTATTTTTTTTTAATTTCCTTTTA  1097

seq1: chr14_118743348_118744467
seq2: B6Ng01-231A20.g_62_1178 (reverse)

seq1  ATGTTGCAATTGTACCGGGCACTTCCATCCACTCCCATGCTGGCAGAGGT  50
      |||||||| ||||| | ||||| ||||||||||||||||||| |||| ||
seq2  ATGTTGCAGTTGTA-CAGGCAC-TCCATCCACTCCCATGCTGCCAGA-GT  47

seq1  ACTTCAGGAGACAAAAAGGGCTTCATTTCCAGATGAGGGAGAGGAGACTC  100
      || ||| ||||| ||||||||||||||| |||||||||||||||||||||
seq2  AC-TCA-GAGAC-AAAAGGGCTTCATTT-CAGATGAGGGAGAGGAGACTC  93

seq1  GGGATGGTT--CAAATAACTTAGCCAGGGTC-AAATAAATGCAATTGAAA  147
       ||||||||   ||||||||||||||||||| ||||||||||||||||||
seq2  -GGATGGTTTCAAAATAACTTAGCCAGGGTCAAAATAAATGCAATTGAAA  142

seq1  CCCAGATCTGTCCAGCCTCCAATTTTCTATTGTCACCCTAC-ACCATGGA  196
      || |||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  CCAAGATCTGTCCAGCCTCCAATTTTCTAATGTCACCCTACAACCATGGA  192

seq1  TCTTACC-ACCAAGTGCTTTTAAGACATAGTGCATTCTTGGTACTTGAGA  245
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCAACCAAGTGCTTTTAAGACATAGTGCATTCTTGGTACTTGAGA  242

seq1  AATAAAATAATACTGCCATAGTTATCCAGAGAGTCCTTGTACCTTTGCCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAATACTGCCATAGTTATCCAGAGAGTCCTTGTACCTTTGCCT  292

seq1  CTCAGACATGTTCTCTGATGGACACTTAATACACAGGCCAGCAGCTGTGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACATGTTCTCTGATGGACACTTAATACACAGGCCAGCAGCTGTGT  342

seq1  GTCCTCTACAGTGTGAGGACTCTACTATGCTAGCATGCAGAGCAAGATCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTACAGTGTGAGGACTCTACTATGCTAGCATGCAGAGCAAGATCC  392

seq1  TAGCTGGCTGTAGAAGAAAGGATCTGTGTTGTGCACATGGGCACTACCAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGCTGTAGAAGAAAGGATCTGTGTTGTGCACATGGGCACTACCAG  442

seq1  GACTATATGGGTAGAACAATGTTTCCCTTAGCCAGCTGCAATCCATGGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATATGGGTAGAACAATGTTTCCCTTAGCCAGCTGCAATCCATGGTT  492

seq1  GAAAGAAACCTCAAGGCCAAGGATAACTGTGGGAAGACCAATGTTTTCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACCTCAAGGCCAAGGATAACTGTGGGAAGACCAATGTTTTCTG  542

seq1  GGCTGCCATTTCACCACACAGGGCGTTAAAAGATATCTTTATTAATTCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCATTTCACCACACAGGGCGTTAAAAGATATCTTTATTAATTCTT  592

seq1  TGAGAATTTCATTCAATGTATTTTGATCATAGGAACCTCCAGCTCCTAGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTTCATTCAATGTATTTTGATCATAGGAACCTCCAGCTCCTAGT  642

seq1  TCCTCCCAGATCCACCTTCACTTCCCTCTTGTCTCCCAACTTTGTGTTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCAGATCCACCTTCACTTCCCTCTTGTCTCCCAACTTTGTGTTTT  692

seq1  CATGTTTTTAAAATCCAGCAAGTTCATTTTGTGCTGTCTGTTCACCTCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTTAAAATCCAGCAAGTTCATTTTGTGCTGTCTGTTCACCTCTG  742

seq1  AGAATGGGGTAATCAAGCTGGGGAATGACTGACCCACCTGGAGACACATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGGGTAATCAAGCTGGGGAATGACTGACCCACCTGGAGACACATC  792

seq1  CCTAAAGAAAGCCTGCTCTCTTTCAGGAGCTGTCAGCTGTCTGTCCATCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGAAAGCCTGCTCTCTTTCAGGAGCTGTCAGCTGTCTGTCCATCA  842

seq1  CCTGGCTTGATCTTGTGCAGGCAGCCACAGTTCTGTGTGCTCATGACTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTGATCTTGTGCAGGCAGCCACAGTTCTGTGTGCTCATGACTGT  892

seq1  AGTGGTCCTGTTACGCTAAGAAGATGCTATTTTTGCTGAAGTCCTTCCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCCTGTTACGCTAAGAAGATGCTATTTTTGCTGAAGTCCTTCCTG  942

seq1  ACCAATGACTCTTTCTATCTTTCTGCCCCATCTTCTGTGAGGGAGCCTCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGACTCTTTCTATCTTTCTGCCCCATCTTCTGTGAGGGAGCCTCA  992

seq1  GTTGGGGAAAGATGTGACAGAAGATGTCCCATATGTGGGTGAAGACTTCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGAAAGATGTGACAGAAGATGTCCCATATGTGGGTGAAGACTTCA  1042

seq1  CCCATATCTCCACCCTTTGTCCACATACAGGACTTGCTCGCCATGGCTGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCTCCACCCTTTGTCCACATACAGGACTTGCTCGCCATGGCTGT  1092

seq1  GACATTGAGATCATGTTGGGAATTC  1120
      |||||||||||||||||||||||||
seq2  GACATTGAGATCATGTTGGGAATTC  1117