BAC Information

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BAC

Clone NameB6Ng01-231G20
Chromosome14 (Build37)
Map Location 43,919,731 - 44,072,012
singlet/doubletdoublet
Overlap geneLOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380
Upstream geneEG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471
Downstream geneLOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231G20.bB6Ng01-231G20.g
ACCGA044033GA044034
length1,1571,129
definitionB6Ng01-231G20.b B6Ng01-231G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,070,839 - 44,072,012)(43,919,731 - 43,920,872)
sequence
gaattcctctacatgttcactcttgctgagccagagcacagatgaaatta
agggctattcattgtaagaaaaaaaaaagtaaaggaagaaaatgcagcag
atgatagccatgagtactggggatgagatgaaacatttgcttagcacatg
cagggatcccactatagaagttctcttcaaaggagaccttgtcctggtct
cttccatgttccagtttctgctggagtatttcacacctagggaaggaaag
aagaaaggcctgattaggatttgtcaattcagctctccgtcccacatgag
atttgttcagctggataatctattatgacctatcatcgcctgaggtcatt
ccctgcatccccaagtgtcatagagcacctgggcttggaattttgttctc
agcttttaaaaagtgctagaaacttaactgtgaactacacactgtactag
agtttaaaagaaaaacactatattactccaatagtccaggtataatatat
tgaataataacattgtagcaatgtctgaatctgagttcaagggagatgtg
aacaacctagaaaaccatgtggatgacttatggggaacctgcttagaatt
gaagtgaaggctatgattatttctctagtgcatgaacctgacagggttcc
actcttcaacccctatatcttgaaataaccagagaaaacatgtcacacga
aatccacaggcactgcatgggtcctaaaatcagaaaaaaaatgtgctaac
tgaaaatattcccaaggctaggaactgaattttaaaagcgatggtcatga
aggaacataacaacatacctataaatctaagactgttgtatagcactctg
tcaattatgcaaattacttgtgttcacacaacacaagcacagtatacctc
agtaacctgtttagtttagtatcctagttatgctattataaaattcccca
ggatatttcggagtcataaaaaacaatcttgaatgtgataggtaggtatt
gggctaagcatatacacagctcactcatgatagctttctctcataaacca
gactcagaatcaggtctgcatattatccatccgtctagcagttcaagctg
tgtagagtaagcttttctgcaagcaaagatccacatggtggtgtggacta
gcctcac
gaattccagaacaaatttaaaagcatggtggtgtgctgcacatggtagtg
catgcctgtaatctcagcattcaggaggctgatgcaaggggatttctgca
ttcagttcaaggtaatcctggtctacagagtgagctccaggacagccaga
gttatacagcgaaaccctgtctcaaaaaaacaaacaaagaaagaaacgcc
tggtgtagtagcataagaatactttaatctctgcacttgaatggcagcac
ttgcaggcagatatctgtgagtttgagatcaatatggtcccatgagtccc
aaaacaggcagggcttcatagagagaccctatctcaaagaatgaataaat
ttaaaaataaaattctatacacacaatgaaaatgtgatatagttatgcaa
ggataacacaatagatgtaaatcaaataaatgtaactcagcacaaaaata
gtctcaaaaattaatagttgaattgtcatctcagtacctacagaaaatgc
attggacatgtccatcatcacctcatgataaaattcctgaagaaactagg
aataggagaaacatgcctcatccgaataaatcttctattcaacaaacata
gtcaacattatagtaatgggagagagaaaaagtctgtataaaataagaaa
caggaccagggtatacatcctctctaccttattcaacataatacctgaga
cttagaagcaatgagcaagtataaagaaacaaggtggaaagagaaaatga
atgtgtggatccctgcaaactctactttcattagggaagtgctcttggtg
aggtaagaagaaaagtaaggtcagttcaattagtcagcaaggctggttca
aacttctggagcttgatgcctagtggatgaatttttacaaatctgaactc
agtaaaactttggaaaatgtttcccgttgacaggtactacagaaaacttt
agttatgactaggtcagattccttctttacagtatgtgacttcaccagca
ctcatgaccttttcacccagaattgagttggtctggacgagaaatgcatg
tgagttctagtagaagtcaacttacattgaaggagatacctttatcaatt
gttgctggccatgtggtctcattatgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44070839_44072012
seq2: B6Ng01-231G20.b_45_1201 (reverse)

seq1  GTGAGGCTAGTCCACAACCACCATGTGATCCTTTGCTGGCAGAAAAGCCT  50
      ||||||||||||||| |||||||||||   ||||||| |||||||||| |
seq2  GTGAGGCTAGTCCAC-ACCACCATGTGGATCTTTGCTTGCAGAAAAGCTT  49

seq1  ACTCTACACAGCTTTTGGAACTTGCTAAGACGGATTGGATAATATGCCAA  100
      ||||||||||||||   |||| |||| ||||||| ||||||||||||  |
seq2  ACTCTACACAGCTT---GAAC-TGCT-AGACGGA-TGGATAATATGC--A  91

seq1  GAACCCTGATTCTGAGTCTGGTTTATGAGAGGAAAGCTTATCATTGAGTG  150
      ||  |||||||||||||||||||||||||| |||||| ||||| ||||||
seq2  GA--CCTGATTCTGAGTCTGGTTTATGAGA-GAAAGC-TATCA-TGAGTG  136

seq1  AGCTGTGTATATGCTTAGCCCAATACCTACCTATCACATTCAAGATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCTGTGTATATGCTTAGCCCAATACCTACCTATCACATTCAAGA-TTGT  185

seq1  TTTTTATGACTCCGAAATATCCTGGGGAATTTTTATAATAGCATTAACTA  250
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  TTTTTATGACTCCGAAATATCCTGGGGAA-TTTTATAATAGCA-TAACTA  233

seq1  GGATACTAAACTAAACAGGTTACTGAGGTATACTGTGCTTGTGTTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTAAACTAAACAGGTTACTGAGGTATACTGTGCTTGTGTTGTGTG  283

seq1  AACACAAGTAATTTGCATAATTGACAGAGTGCTATACAACAGTCTTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAGTAATTTGCATAATTGACAGAGTGCTATACAACAGTCTTAGAT  333

seq1  TTATAGGTATGTTGTTATGTTCCTTCATGACCATCGCTTTTAAAATTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTATGTTGTTATGTTCCTTCATGACCATCGCTTTTAAAATTCAG  383

seq1  TTCCTAGCCTTGGGAATATTTTCAGTTAGCACATTTTTTTTCTGATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCCTTGGGAATATTTTCAGTTAGCACATTTTTTTTCTGATTTTA  433

seq1  GGACCCATGCAGTGCCTGTGGATTTCGTGTGACATGTTTTCTCTGGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCATGCAGTGCCTGTGGATTTCGTGTGACATGTTTTCTCTGGTTAT  483

seq1  TTCAAGATATAGGGGTTGAAGAGTGGAACCCTGTCAGGTTCATGCACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATATAGGGGTTGAAGAGTGGAACCCTGTCAGGTTCATGCACTAG  533

seq1  AGAAATAATCATAGCCTTCACTTCAATTCTAAGCAGGTTCCCCATAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAATCATAGCCTTCACTTCAATTCTAAGCAGGTTCCCCATAAGTC  583

seq1  ATCCACATGGTTTTCTAGGTTGTTCACATCTCCCTTGAACTCAGATTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACATGGTTTTCTAGGTTGTTCACATCTCCCTTGAACTCAGATTCAG  633

seq1  ACATTGCTACAATGTTATTATTCAATATATTATACCTGGACTATTGGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCTACAATGTTATTATTCAATATATTATACCTGGACTATTGGAGT  683

seq1  AATATAGTGTTTTTCTTTTAAACTCTAGTACAGTGTGTAGTTCACAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTGTTTTTCTTTTAAACTCTAGTACAGTGTGTAGTTCACAGTTA  733

seq1  AGTTTCTAGCACTTTTTAAAAGCTGAGAACAAAATTCCAAGCCCAGGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTAGCACTTTTTAAAAGCTGAGAACAAAATTCCAAGCCCAGGTGC  783

seq1  TCTATGACACTTGGGGATGCAGGGAATGACCTCAGGCGATGATAGGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGACACTTGGGGATGCAGGGAATGACCTCAGGCGATGATAGGTCAT  833

seq1  AATAGATTATCCAGCTGAACAAATCTCATGTGGGACGGAGAGCTGAATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATTATCCAGCTGAACAAATCTCATGTGGGACGGAGAGCTGAATTG  883

seq1  ACAAATCCTAATCAGGCCTTTCTTCTTTCCTTCCCTAGGTGTGAAATACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCCTAATCAGGCCTTTCTTCTTTCCTTCCCTAGGTGTGAAATACT  933

seq1  CCAGCAGAAACTGGAACATGGAAGAGACCAGGACAAGGTCTCCTTTGAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGAAACTGGAACATGGAAGAGACCAGGACAAGGTCTCCTTTGAAG  983

seq1  AGAACTTCTATAGTGGGATCCCTGCATGTGCTAAGCAAATGTTTCATCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCTATAGTGGGATCCCTGCATGTGCTAAGCAAATGTTTCATCTC  1033

seq1  ATCCCCAGTACTCATGGCTATCATCTGCTGCATTTTCTTCCTTTACTTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGTACTCATGGCTATCATCTGCTGCATTTTCTTCCTTTACTTTT  1083

seq1  TTTTTTCTTACAATGAATAGCCCTTAATTTCATCTGTGCTCTGGCTCAGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTACAATGAATAGCCCTTAATTTCATCTGTGCTCTGGCTCAGC  1133

seq1  AAGAGTGAACATGTAGAGGAATTC  1174
      ||||||||||||||||||||||||
seq2  AAGAGTGAACATGTAGAGGAATTC  1157

seq1: chr14_43919731_43920872
seq2: B6Ng01-231G20.g_66_1194

seq1  GAATTCCAGAACAAATTTAAAAGCATGGTGGTGTGCTGCACATGGTAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACAAATTTAAAAGCATGGTGGTGTGCTGCACATGGTAGTG  50

seq1  CATGCCTGTAATCTCAGCATTCAGGAGGCTGATGCAAGGGGATTTCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGTAATCTCAGCATTCAGGAGGCTGATGCAAGGGGATTTCTGCA  100

seq1  TTCAGTTCAAGGTAATCCTGGTCTACAGAGTGAGCTCCAGGACAGCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCAAGGTAATCCTGGTCTACAGAGTGAGCTCCAGGACAGCCAGA  150

seq1  GTTATACAGCGAAACCCTGTCTCAAAAAAACAAACAAAGAAAGAAACGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACAGCGAAACCCTGTCTCAAAAAAACAAACAAAGAAAGAAACGCC  200

seq1  TGGTGTAGTAGCATAAGAATACTTTAATCTCTGCACTTGAATGGCAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAGTAGCATAAGAATACTTTAATCTCTGCACTTGAATGGCAGCAC  250

seq1  TTGCAGGCAGATATCTGTGAGTTTGAGATCAATATGGTCCCATGAGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGCAGATATCTGTGAGTTTGAGATCAATATGGTCCCATGAGTCCC  300

seq1  AAAACAGGCAGGGCTTCATAGAGAGACCCTATCTCAAAGAATGAATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGCAGGGCTTCATAGAGAGACCCTATCTCAAAGAATGAATAAAT  350

seq1  TTAAAAATAAAATTCTATACACACAATGAAAATGTGATATAGTTATGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAAAATTCTATACACACAATGAAAATGTGATATAGTTATGCAA  400

seq1  GGATAACACAATAGATGTAAATCAAATAAATGTAACTCAGCACAAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACACAATAGATGTAAATCAAATAAATGTAACTCAGCACAAAAATA  450

seq1  GTCTCAAAAATTAATAGTTGAATTGTCATCTCAGTACCTACAGAAAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAAATTAATAGTTGAATTGTCATCTCAGTACCTACAGAAAATGC  500

seq1  ATTGGACATGTCCATCATCACCTCATGATAAAATTCCTGAAGAAACTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACATGTCCATCATCACCTCATGATAAAATTCCTGAAGAAACTAGG  550

seq1  AATAGGAGAAACATGCCTCATCCGAATAAATCTTCTATTCAACAAACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAGAAACATGCCTCATCCGAATAAATCTTCTATTCAACAAACATA  600

seq1  GTCAACATTATAGTAATGGGAGAGAGAAAAAGTCTGTATAAAATAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACATTATAGTAATGGGAGAGAGAAAAAGTCTGTATAAAATAAGAAA  650

seq1  CAGGACCAGGGTATACATCCTCTCTACCTTATTCAACATAATACCTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCAGGGTATACATCCTCTCTACCTTATTCAACATAATACCTGAGA  700

seq1  CTTAGAAGCAATGAGCAAGTATAAAGAAACAAGGTGGAAAGAGAAAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGCAATGAGCAAGTATAAAGAAACAAGGTGGAAAGAGAAAATGA  750

seq1  ATGTGTGGATCCCTGCAAACTCTACTTTCATTAGGGAAGTGCTCTTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGATCCCTGCAAACTCTACTTTCATTAGGGAAGTGCTCTTGGTG  800

seq1  AGGTAAGAAGAAAAGTAAGGTCAGTTCAAATTAGTCAGCAAGGCTGGTTC  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGTAAGAAGAAAAGTAAGGTCAGTTC-AATTAGTCAGCAAGGCTGGTTC  849

seq1  AAACTTCTGGAGCTTGATGCCTAGTGGATGAATTTTTACAAATCTGAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTGGAGCTTGATGCCTAGTGGATGAATTTTTACAAATCTGAACT  899

seq1  CAGTAAAACTTTGGAAAATGTTTCCCGTTGACAGGTACTACAAGAAAACT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGTAAAACTTTGGAAAATGTTTCCCGTTGACAGGTACTAC-AGAAAACT  948

seq1  TTAGTTATGACTAGGTCAGAATTCCTCTTTACAGTATGTGACTTCAACCA  1000
      |||||||||||||||||||| | | |||||||||||||||||||||  | 
seq2  TTAGTTATGACTAGGTCAGATTCCTTCTTTACAGTATGTGACTTCA--CC  996

seq1  AGCACCCATGACCTTTTCACCCAGAA-TGAGTTGTCCTGACAGAGAAAAG  1049
      ||||| |||||||||||||||||||| |||||||  |||   ||| ||| 
seq2  AGCACTCATGACCTTTTCACCCAGAATTGAGTTGGTCTGGACGAG-AAAT  1045

seq1  GCATGTGAGTTCTAGTAAGGAAGTCAAACTTACATTGAAGAAAGGATACC  1099
      |||||||||||||||||  |||||| |||||||||||||| |  ||||||
seq2  GCATGTGAGTTCTAGTA--GAAGTC-AACTTACATTGAAGGA--GATACC  1090

seq1  CTTATCAAATGGTGCCTGGCCATGTGGGTCTTCATATATGTGA  1142
       ||||||| || || |||||||||| |||| |||| |||||||
seq2  TTTATCAATTGTTG-CTGGCCATGT-GGTC-TCAT-TATGTGA  1129