BAC Information

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BAC

Clone NameB6Ng01-231H23
Chromosome14 (Build37)
Map Location 118,657,208 - 118,809,914
singlet/doubletdoublet
Overlap geneLOC100043825, EG668814, LOC435422
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21
Downstream geneAbcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231H23.bB6Ng01-231H23.g
ACCGA044084GA044085
length472978
definitionB6Ng01-231H23.b B6Ng01-231H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,809,437 - 118,809,914)(118,657,208 - 118,658,177)
sequence
ccgtcagaggccctcatcatttacagcattcagggatatcgctagctacc
gtctccaaactcctccaaattacattctcaaagcagttcaaaaggcttct
gaaccatgctatcaggtaatttccagaaatgaccccacttctgtgggtac
tgatcttatatatgtcagaatttcattactgggatatagtatttgataga
ggaacctaggaagaaatactttgctcacagtttcaggccatcaacgtggg
gaaggtgaatagtgcagttcatatgacagtggtcaagaagcaggagaagg
agaggagggagaggagagaagaaggaagaggaggagatggaagaggacac
ctgtgctgagaatataatattttaataggatgtggatccaccaaattcat
tctggatatagatcacccaaatagcaaggaatttgtttttaattttaatt
attttatgtgtgtatttgtcag
gaattctacacagcaataaacacctttgaacattgacgttgagtttgcag
cagcaatctgagtgactgtcacagaattcttgagcaggtatgtcgagccg
tgtgagaattcagaatctcaatgtttccatttaatttcctatgtgcaaat
ttgcaaagctaacatctagtgttagaagtcaaaagaaagggagcaaacgg
atgctggttagcaggattcaatggaggtgtttagggagctggggttggta
acattccatttcttcagctctatgttaattaaataaatgagcttattagt
ttacaactcaatgagttatacgacgaagagccatgtccttttgctggacg
ctttaaggaaaaagttaagaaaaagtaactcggaatgttataaaatgcaa
tacagcttttggtgggatggggggcaaggactaaaaccatttgtaccatc
cagaaacttccatcatccctgaagctactgtgtaaactctgcagtataag
taacagtgcttttagaatatttcagcaggaactgagtcagaaaaggtacc
aaaagctggacaaaaatttccccatgagcaacatgtggtgagggggtgta
gtgtttgaagcgagccatgctgtgctgatgggcatgcatcaaactgcaca
ggaacctcagtcattataacactcacggcggctggaattcccatcaagtg
atctgtgagggaatttccaggtggccatgacgtgacagagcagaatgacg
ggctacacgggctaaaggtggatatcctgggactcagacccacagtggtg
tagaaggtgttatcatttaagtcttgagcagtcctcacaggctcatggct
ttgaagggacaaattttaaaggattgtactggtgcaggaggtgaggcagg
ggttgacagatgaaaggtccactgggtgaacctttcaacattacatccac
ttcttgatttttggtctgcttccctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118809437_118809914
seq2: B6Ng01-231H23.b_43_520 (reverse)

seq1  CTGACTAATACACACATAAAATAATTAAAATTAAAAACAAATTCCTTGCT  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAATACACACATAAAATAATTAAAATTAAAAACAAATTCCTTGCT  50

seq1  ATTTGGGTGATCTATATCCAGAATGAATTTGGTGGATCCACATCCTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGTGATCTATATCCAGAATGAATTTGGTGGATCCACATCCTATTA  100

seq1  AAATATTATATTCTCAGCACAGGTGTCCTCTTCCATCTCCTCCTCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTATATTCTCAGCACAGGTGTCCTCTTCCATCTCCTCCTCTTCCT  150

seq1  TCTTCTCTCCTCTCCCTCCTCTCCTTCTCCTGCTTCTTGACCACTGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCCTCTCCCTCCTCTCCTTCTCCTGCTTCTTGACCACTGTCAT  200

seq1  ATGAACTGCACTATTCACCTTCCCCACGTTGATGGCCTGAAACTGTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGCACTATTCACCTTCCCCACGTTGATGGCCTGAAACTGTGAGC  250

seq1  AAAGTATTTCTTCCTAGGTTCCTCTATCAAATACTATATCCCAGTAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTCTTCCTAGGTTCCTCTATCAAATACTATATCCCAGTAATGA  300

seq1  AATTCTGACATATATAAGATCAGTACCCACAGAAGTGGGGTCATTTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGACATATATAAGATCAGTACCCACAGAAGTGGGGTCATTTCTGG  350

seq1  AAATTACCTGATAGCATGGTTCAGAAGCCTTTTGAACTGCTTTGAGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACCTGATAGCATGGTTCAGAAGCCTTTTGAACTGCTTTGAGAATG  400

seq1  TAATTTGGAGGAGTTTGGAGACGGTAGCTAGCGATATCCCTGAATGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGGAGGAGTTTGGAGACGGTAGCTAGCGATATCCCTGAATGCTGT  450

seq1  AAATGATGAGGGCCTCTGACGGGAATTC  478
      ||||||||||||||||||||||||||||
seq2  AAATGATGAGGGCCTCTGACGGGAATTC  478

seq1: chr14_118657208_118658177
seq2: B6Ng01-231H23.g_66_1043

seq1  GAATTCTACACAGCAATAAACACCTTTGAACATTGACGTTGAGTTTGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACAGCAATAAACACCTTTGAACATTGACGTTGAGTTTGCAG  50

seq1  CAGCAATCTGAGTGACTGTCACAGAATTCTTGAGCAGGTATGTCGAGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATCTGAGTGACTGTCACAGAATTCTTGAGCAGGTATGTCGAGCCG  100

seq1  TGTGAGAATTCAGAATCTCAATGTTTCCATTTAATTTCCTATGTGCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAATTCAGAATCTCAATGTTTCCATTTAATTTCCTATGTGCAAAT  150

seq1  TTGCAAAGCTAACATCTAGTGTTAGAAGTCAAAAGAAAGGGAGCAAACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGCTAACATCTAGTGTTAGAAGTCAAAAGAAAGGGAGCAAACGG  200

seq1  ATGCTGGTTAGCAGGATTCAATGGAGGTGTTTAGGGAGCTGGGGTTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGTTAGCAGGATTCAATGGAGGTGTTTAGGGAGCTGGGGTTGGTA  250

seq1  ACATTCCATTTCTTCAGCTCTATGTTAATTAAATAAATGAGCTTATTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCATTTCTTCAGCTCTATGTTAATTAAATAAATGAGCTTATTAGT  300

seq1  TTACAACTCAATGAGTTATACGACGAAGAGCCATGTCCTTTTGCTGGACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTCAATGAGTTATACGACGAAGAGCCATGTCCTTTTGCTGGACG  350

seq1  CTTTAAGGAAAAAGTTAAGAAAAAGTAACTCGGAATGTTATAAAATGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGGAAAAAGTTAAGAAAAAGTAACTCGGAATGTTATAAAATGCAA  400

seq1  TACAGCTTTTGGTGGGATGGGGGGCAAGGACTAAAACCATTTGTACCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTTTGGTGGGATGGGGGGCAAGGACTAAAACCATTTGTACCATC  450

seq1  CAGAAACTTCCATCATCCCTGAAGCTACTGTGTAAACTCTGCAGTATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTTCCATCATCCCTGAAGCTACTGTGTAAACTCTGCAGTATAAG  500

seq1  TAACAGTGCTTTTAGAATATTTCAGCAGGAACTGAGTCAGAAAAGGTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGCTTTTAGAATATTTCAGCAGGAACTGAGTCAGAAAAGGTACC  550

seq1  AAAAGCTGGACAAAAATTTCCCCATGAGCAACATGTGGTGAGGGGGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGGACAAAAATTTCCCCATGAGCAACATGTGGTGAGGGGGTGTA  600

seq1  GTGTTTGAAGCGAGCCATGCTGTGCTGATGGGCATGCATCAAACTGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGAAGCGAGCCATGCTGTGCTGATGGGCATGCATCAAACTGCACA  650

seq1  GGAACCTCAGTCATTATAACACTCACGGCGGCTGGAATTCCCATCAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTCAGTCATTATAACACTCACGGCGGCTGGAATTCCCATCAAGTG  700

seq1  ATCTGTGAGGGAATTTCCAGGTGGCCATGACGTGACAGAGCAGAATGACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGAGGGAATTTCCAGGTGGCCATGACGTGACAGAGCAGAATGACG  750

seq1  GGCTACACGGGCTAAAGGTGGATATCCTGGGACTCAGACCCACAGTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACACGGGCTAAAGGTGGATATCCTGGGACTCAGACCCACAGTGGTG  800

seq1  TAGAAGGTGTTATCATTTAAGTC-TGAGCAGTCCTCACAGGCTCATGGC-  848
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TAGAAGGTGTTATCATTTAAGTCTTGAGCAGTCCTCACAGGCTCATGGCT  850

seq1  TTGAA-GGACAAATTT--AAAGATTGTAGTGGTGCAGGAGGTGAGGCAGG  895
      ||||| ||||||||||  || ||||||| |||||||||||||||||||||
seq2  TTGAAGGGACAAATTTTAAAGGATTGTACTGGTGCAGGAGGTGAGGCAGG  900

seq1  GGTTGACAGAAGAAAGGTCCACTGGGTGAACCTTTCAACATTACATCCAC  945
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACAGATGAAAGGTCCACTGGGTGAACCTTTCAACATTACATCCAC  950

seq1  TCCTGG--TTTTGGTCTGC-TCCCTCTG  970
      | || |  ||||||||||| ||||||||
seq2  TTCTTGATTTTTGGTCTGCTTCCCTCTG  978