BAC Information

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BAC

Clone NameB6Ng01-231I23
Chromosome14 (Build37)
Map Location 16,924,244 - 17,078,861
singlet/doubletdoublet
Overlap geneLOC667209, EG435389, Oxsm
Upstream geneLrrc3b, LOC667205, 1700062C10Rik
Downstream geneNgly1, Top2b, Rarb, Tpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231I23.bB6Ng01-231I23.g
ACCGA044128GA044129
length7771,172
definitionB6Ng01-231I23.b B6Ng01-231I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,078,297 - 17,078,861)(16,924,244 - 16,925,419)
sequence
gaattctctgcatgaagatactgagagaataagacgtcatgataggccat
tttgtagagctgtgaaagggaagcttgggttccagtggagaccacaagat
gttggagatatcaacgctatgagaaagctgccaaggaggtcaatagagaa
ggaccagcctaagagagagatgcaggctactggcaggaaagctggaggtg
tggagcccttaacagaagacacgaagctacaggatttggtgttttgtcct
gctggattctagtcatagtttggtccattatgttcttattccccacttgg
accttttgggatggcaatctgtgccatatattggaaatatgtgatttgcc
tttttattttactgaaggttgaattctgtgatgctttgcatcttagaaga
gactttgggcttttaaacagtattaagactgtgaaagactccagggcatc
tatgaagaccggggagtagagtgtggtggtttgaatggaaatatttccta
caggctctagtatttgaactcatggtttccagtcagtagttcagtttggg
aatagttaggtggcacatcttgctggaagaagtatgtcactgaaagtagt
agagaaaacacctttgtttgctctcttggcttcatgcttgtggtaaagga
tgtgaactttccatttcttcctatagccaccatgcttgctgtctgctgat
atgctgtcgccataaccttctggaaatatccctttgcctctgagccattt
ctcccacacctcatttttattttgtgt

gaattcaacccaaggagacttagaacttgaatacagttgccacacttagt
ttagctgaacttttattacagaagttgtagaactggactcacccttaagt
ttagtcccagttgaataacaggccctcccctcagaaaccctaatcactgg
cataggtcattcctaagaagcaagaaaccatggcagttcctttcaggtga
gggtgattcctgcccagaggctgaaccatgagccagcatcacggaaagct
ctcaggatcagggaggatttgaacagcactcagcaccatcctcagagtag
acagacacagactcagataatttacggcctttgaggaaaatcctggagat
gcagttctgttctagagttcttgcctgccatccacaaggctgtggactca
ttctcagatgggaaaaaaaggcctgattttggttctgaatacccatataa
ggcatctcacaaccacctataattctagttccaagagatctcacatcttc
tggattaacatacacacacacacacacacacacacacacacacacacaca
cacagcacacagcacacggcacacacacaaatcaaataataaagatgaaa
tatttaaagggaaaggatgccaccttagattcaggtgtgcatttgttatt
gctactttagtaattacactaagttgttgacttgtagactgatgctgtat
gatgaacatttcttcaacaaagatatcatgaatggttagcataaaatccc
tatccattcctctgtttcaaattcagccagctggtatgttcagcctctgc
ccaggttaacctgctacaaccctatagcccatagctatccctttggagca
tttgctagtgcctggaggcagctgtggaagagtagaggttactctcatgg
tagatagaactcagagatgccatttacatcctaacatactgtcacatacc
accataaagagccagctactcacagtcatcagtttctctgccataagcct
gtattatagcttgccttatacgttcttaagaaacggacatcccaaatatg
aacacaaaaaggatttgaaaggtcattctgccactaaaggaaggagttat
tgtttttgggcagaaagctcaaggtaatgcagaacggatgcaccttggcc
ctgttttcttcgagccccctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_17078297_17078861
seq2: B6Ng01-231I23.b_289_826 (reverse)

seq1  ACACACACACACACACACACACACACACACACAAATAAAAATGAGGTGTG  50
                                ||||| ||||||||||||||||||
seq2  --------------------------ACACA-AAATAAAAATGAGGTGTG  23

seq1  GGAGAAATGGCTCAGAGGCAAAGGGATATTTCCAGAAGGTTATGGCGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATGGCTCAGAGGCAAAGGGATATTTCCAGAAGGTTATGGCGACA  73

seq1  GCATATCAGCAGACAGCAAGCATGGTGGCTATAGGAAGAAATGGAAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCAGCAGACAGCAAGCATGGTGGCTATAGGAAGAAATGGAAAGTT  123

seq1  CACATCCTTTACCACAAGCATGAAGCCAAGAGAGCAAACAAAGGTGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTTTACCACAAGCATGAAGCCAAGAGAGCAAACAAAGGTGTTTT  173

seq1  CTCTACTACTTTCAGTGACATACTTCTTCCAGCAAGATGTGCCACCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTACTTTCAGTGACATACTTCTTCCAGCAAGATGTGCCACCTAAC  223

seq1  TATTCCCAAACTGAACTACTGACTGGAAACCATGAGTTCAAATACTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCAAACTGAACTACTGACTGGAAACCATGAGTTCAAATACTAGAG  273

seq1  CCTGTAGGAAATATTTCCATTCAAACCACCACACTCTACTCCCCGGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGGAAATATTTCCATTCAAACCACCACACTCTACTCCCCGGTCTT  323

seq1  CATAGATGCCCTGGAGTCTTTCACAGTCTTAATACTGTTTAAAAGCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGCCCTGGAGTCTTTCACAGTCTTAATACTGTTTAAAAGCCCAA  373

seq1  AGTCTCTTCTAAGATGCAAAGCATCACAGAATTCAACCTTCAGTAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTCTAAGATGCAAAGCATCACAGAATTCAACCTTCAGTAAAATA  423

seq1  AAAAGGCAAATCACATATTTCCAATATATGGCACAGATTGCCATCCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAAATCACATATTTCCAATATATGGCACAGATTGCCATCCCAAA  473

seq1  AGGTCCAAGTGGGGAATAAGAACATAATGGACCAAACTATGACTAGAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAAGTGGGGAATAAGAACATAATGGACCAAACTATGACTAGAATC  523

seq1  CAGCAGGACAAAACA  565
      |||||||||||||||
seq2  CAGCAGGACAAAACA  538


seq1: chr14_16924244_16925419
seq2: B6Ng01-231I23.g_68_1239

seq1  GAATTCAACCCAAGGAGACTTAGAACTTGAATACAGTTGCCACACTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCAAGGAGACTTAGAACTTGAATACAGTTGCCACACTTAGT  50

seq1  TTAGCTGAACTTTTATTACAGAAGTTGTAGAACTGGACTCACCCTTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGAACTTTTATTACAGAAGTTGTAGAACTGGACTCACCCTTAAGT  100

seq1  TTAGTCCCAGTTGAATAACAGGCCCTCCCCTCAGAAACCCTAATCACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCCAGTTGAATAACAGGCCCTCCCCTCAGAAACCCTAATCACTGG  150

seq1  CATAGGTCATTCCTAAGAAGCAAGAAACCATGGCAGTTCCTTTCAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTCATTCCTAAGAAGCAAGAAACCATGGCAGTTCCTTTCAGGTGA  200

seq1  GGGTGATTCCTGCCCAGAGGCTGAACCATGAGCCAGCATCACGGAAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATTCCTGCCCAGAGGCTGAACCATGAGCCAGCATCACGGAAAGCT  250

seq1  CTCAGGATCAGGGAGGATTTGAACAGCACTCAGCACCATCCTCAGAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGATCAGGGAGGATTTGAACAGCACTCAGCACCATCCTCAGAGTAG  300

seq1  ACAGACACAGACTCAGATAATTTACGGCCTTTGAGGAAAATCCTGGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACAGACTCAGATAATTTACGGCCTTTGAGGAAAATCCTGGAGAT  350

seq1  GCAGTTCTGTTCTAGAGTTCTTGCCTGCCATCCACAAGGCTGTGGACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTGTTCTAGAGTTCTTGCCTGCCATCCACAAGGCTGTGGACTCA  400

seq1  TTCTCAGATGGGAAAAAAAGGCCTGATTTTGGTTCTGAATACCCATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGATGGGAAAAAAAGGCCTGATTTTGGTTCTGAATACCCATATAA  450

seq1  GGCATCTCACAACCACCTATAATTCTAGTTCCAAGAGATCTCACATCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTCACAACCACCTATAATTCTAGTTCCAAGAGATCTCACATCTTC  500

seq1  TGGATTAACATACACACACACACACACACACACACACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAACATACACACACACACACACACACACACACACACACACACACA  550

seq1  CACAGCACACAGCACACGGCACACACACAAATCAAATAATAAAGATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACACAGCACACGGCACACACACAAATCAAATAATAAAGATGAAA  600

seq1  TATTTAAAGGGAAAGGATGCCACCTTAGATTCAGGTGTGCATTTGTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAGGGAAAGGATGCCACCTTAGATTCAGGTGTGCATTTGTTATT  650

seq1  GCTACTTTAGTAATTACACTAAGTTGTTGACTTGTAGACTGATGCTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTAGTAATTACACTAAGTTGTTGACTTGTAGACTGATGCTGTAT  700

seq1  GATGAACATTTCTTCAACAAAGATATCATGAATGGTTAGCATAAAATCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACATTTCTTCAACAAAGATATCATGAATGGTTAGCATAAAATCCC  750

seq1  TATCCATTCCTCTGTTTCAAATTCAGCCAGCTGGTATGTTCAGCCTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATTCCTCTGTTTCAAATTCAGCCAGCTGGTATGTTCAGCCTCTGC  800

seq1  CCAGGTTAACCTGCTACAACCCTATAGCCCATAGCTATCCCTTTGGAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTAACCTGCTACAACCCTATAGCCCATAGCTATCCCTTTGGAGCA  850

seq1  TTTGCTAGTGCCTGGAGGCAGCTGTGGAAGAGTAGAGGTTACTCTCATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGTGCCTGGAGGCAGCTGTGGAAGAGTAGAGGTTACTCTCATGG  900

seq1  TAGATAGAACTCAGAGATGCCATTTACATCCTAACATACTGTCACATACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGAACTCAGAGATGCCATTTACATCCTAACATACTGTCACATACC  950

seq1  ACCATAAAGAGCCAGCTACTCACAAGTCATCAGTTTCTCTGCCAATAAGG  1000
      ||||||||||||||||||||||| ||||||||||||||||||| |||| |
seq2  ACCATAAAGAGCCAGCTACTCAC-AGTCATCAGTTTCTCTGCC-ATAA-G  997

seq1  CCTGTATTATAGCTTGCCCTATACGT--CTAAGAAACGGACATCCCAAAT  1048
      |||||||||||||||||| |||||||   |||||||||||||||||||| 
seq2  CCTGTATTATAGCTTGCCTTATACGTTCTTAAGAAACGGACATCCCAAA-  1046

seq1  TATG-ACACAAAAA-GATTTGAAAAGGGTCATTCTTGCCACTAAAAGAGA  1096
      |||| ||||||||| |||||||||  |||||||| |||||||||| || |
seq2  TATGAACACAAAAAGGATTTGAAA--GGTCATTC-TGCCACTAAAGGA-A  1092

seq1  GGAGTAAATGTTTTTTGGCAGAGAGCTCAGGAAAATGAAAGGACAGGTTG  1146
      ||||| | ||||||| |||||| |||||| |  |||| |  ||  || | 
seq2  GGAGTTATTGTTTTTGGGCAGAAAGCTCAAGGTAATGCA--GAACGGAT-  1139

seq1  GCACCT---GCCTCTGTTCCTCCAGCCCCCTCA  1176
      ||||||    ||| | ||| || ||||||||||
seq2  GCACCTTGGCCCTGTTTTCTTCGAGCCCCCTCA  1172


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