BAC Information

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BAC

Clone NameB6Ng01-231J08
Chromosome14 (Build37)15 (Build37)
Map Location 93,454,925 - 93,455,38430,881,196 - 30,881,667
singlet/doubletsingletsinglet
Overlap genePcdh9
Upstream geneEG665377, LOC638252
Downstream geneLOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231J08.bB6Ng01-231J08.g
ACCGA044146GA044147
length454846
definitionB6Ng01-231J08.b B6Ng01-231J08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,454,925 - 93,455,384)(30,881,196 - 30,881,667)
sequence
ctagtctggtttaggagtgccatcttttattcatcttagagatttcaact
gatcagagtgggctcatatgtactataggagcaatctcttttacttataa
atactggatttgaatgtcaatcataagtaatgaatgccttcaaagtagca
ttagcttgtgatcaaatgcctgcttactacagaaaagccaagttagcaca
cacaattttccatcacaaagtggattgcacttttcttgcaaactgcactt
aaagtaccccctagcaaagaacacatctcgacttgatggttagattagtc
cagaaaacatccctcgcagtctcctggtggtggtgtaccttattggagaa
cttcctaagattgagtttaactctcactgatgcagagaaaaattaaagct
tttaaatttaatgaaaaggagagtgtgagaaggagatgaggaggggaggg
ggaa

gaattcaaggcccatacctaaacacaataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
attatgaactagacaaggctgcctactctttccatacctattcattacag
tacttgaagtcctagtcagagcaattagacaattaaaaggagatcaaagg
gatacaaattggaaaggaagaagtcaaaatatcactatttgcagatgata
tgaccgtttacctaagtgaacccaaaaattccaccagagaactcctaaac
ccgataaacaacttctgtcaagtagctggatataaaattaactcaaacaa
atcagcggcctttttctatacaatggataaacaagctgagaaagaaaata
ggtaaacaacacccttcaaaatagtcacaaataaaataaaataccttggt
gtgactttaactaaggaagtgaaagatctgtatgataagaacttcaagtc
tttgaagaaaaaaaatcgaagatttcagaggatggaaagatttcccatgc
tcatggattggcaggattaatatagtaaaaatggctatcttgtcaaaatc
aatctacagattcaatgtaatccccatcaaaattcctactcaattcttca
ctgagttagaaacactatgaactaaccagtaccctccccaccccacccca
cccccggagctcgtatctctagctgaatatgaatcagaagatggcctagt
cagccatcagtggaaagaaaggcccattggtcgtgcaaactttatatgac
tcagtacaggggaatgccagggccaagaagtgtgagtgggtggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93454925_93455384
seq2: B6Ng01-231J08.b_42_501 (reverse)

seq1  TTCCCCCTCCCCTCCTCATCTCCTTCTCACACTCTCCTTTTCATTAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTCCCCTCCTCATCTCCTTCTCACACTCTCCTTTTCATTAAATT  50

seq1  TAAAAGCTTTAATTTTTCTCTGCATCAGTGAGAGTTAAACTCAATCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTTTAATTTTTCTCTGCATCAGTGAGAGTTAAACTCAATCTTAG  100

seq1  GAAGTTCTCCAATAAGGTACACCACCACCAGGAGACTGCGAGGGATGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTCCAATAAGGTACACCACCACCAGGAGACTGCGAGGGATGTTT  150

seq1  TCTGGACTAATCTAACCATCAAGTCGAGATGTGTTCTTTGCTAGGGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTAATCTAACCATCAAGTCGAGATGTGTTCTTTGCTAGGGGGTA  200

seq1  CTTTAAGTGCAGTTTGCAAGAAAAGTGCAATCCACTTTGTGATGGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTGCAGTTTGCAAGAAAAGTGCAATCCACTTTGTGATGGAAAAT  250

seq1  TGTGTGTGCTAACTTGGCTTTTCTGTAGTAAGCAGGCATTTGATCACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCTAACTTGGCTTTTCTGTAGTAAGCAGGCATTTGATCACAAG  300

seq1  CTAATGCTACTTTGAAGGCATTCATTACTTATGATTGACATTCAAATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTACTTTGAAGGCATTCATTACTTATGATTGACATTCAAATCCA  350

seq1  GTATTTATAAGTAAAAGAGATTGCTCCTATAGTACATATGAGCCCACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATAAGTAAAAGAGATTGCTCCTATAGTACATATGAGCCCACTCT  400

seq1  GATCAGTTGAAATCTCTAAGATGAATAAAAGATGGCACTCCTAAACCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTTGAAATCTCTAAGATGAATAAAAGATGGCACTCCTAAACCAGA  450

seq1  CTAGGAATTC  460
      ||||||||||
seq2  CTAGGAATTC  460


seq1: chr15_30881196_30881667
seq2: B6Ng01-231J08.g_727_912 (reverse)

seq1  ACCCCACCCACTCACATTTGCCTAATAAGGAACTTTAGTTGCAGCTTCAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTAATTTGTTGGATTACTGACCATGATTGTTTTTTTTTAAGCTTTTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCACTTTATATTGAGACAATTGATCACAGAGAAACACTAGCTTGATGTCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  AAATCACAGACTCAAAAACACCCTATCAATGTACAATCAAGGCAAAGGGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTGGATCACCTTATCTTTTTTTTAATATTTTTATTACATATTTTTCTCAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCCCAC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCCTACCCACCCATTCCCATTTTTTTGGCCCTGGCGTTCCCCTGTACT  350
             |||||||| || ||  || ||||||||||| ||||||||||||
seq2  -----ACCCCACCCACTCACA-CTTCTTGGCCCTGGCATTCCCCTGTACT  44

seq1  GGGGCATATACAGTTTGCATGTCCAATGGGCCTCTCTTTCCAGTGATGGC  400
      | | |||||| |||||||| | ||||||||||| |||||||| |||||||
seq2  GAGTCATATAAAGTTTGCACGACCAATGGGCCTTTCTTTCCACTGATGGC  94

seq1  CGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCTG--  448
       |||||||||||||| |||| ||||| |||||||||  | |||||| |  
seq2  TGACTAGGCCATCTTCTGATTCATATTCAGCTAGAGATACGAGCTCCGGG  144

seq1  ------------------GGGTACTGGTTAGTTCATAATGTT  472
                        ||||||||||||||||||| ||||
seq2  GGTGGGGTGGGGTGGGGAGGGTACTGGTTAGTTCATAGTGTT  186


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