BAC Information

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BAC

Clone NameB6Ng01-232F17
Chromosome14 (Build37)
Map Location 46,357,293 - 46,497,849
singlet/doubletdoublet
Overlap geneLOC666834
Upstream genePtgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379
Downstream geneLOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232F17.bB6Ng01-232F17.g
ACCGA044715GA044716
length8691,127
definitionB6Ng01-232F17.b B6Ng01-232F17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,357,293 - 46,358,161)(46,496,718 - 46,497,849)
sequence
gaattcttcagataactgtaggctatgtcaggttgacatctgaggctaac
taggagaaaagccattatctaaggccccagtgttaaattttggaatacta
agagaggttaaaaaattgaaacattcttttctttctgcaccgtgaagcct
ggcatcatagcttattgctaattctgtacagggcatagattagtcctttc
agcctttggtgcagggaaatgtctttcatctactctgagggacctgtact
tcctcctgcctttagccccagcacctgggaagggctgaaaaatcctcctg
tgagtcaaaactataacaacgctcagtagcatggaggtgttatcctttga
gcatttagatttttccaacaaagtatgaatgtttgagtcctttcagaatt
tgtatagtgattgccaagaaaacagaattaggaattaaagtcttcagggg
ccattagatcatacatcagagtcttcctgcctaggattaacaaacttcct
tatgaaagtggtctgagctatgcttgggacataggaggccttgggtaaca
cacacacacacacacacacacacacacacacacacacacacacactccag
gaaacaggtccttccggggcactgactctacttccgccttggttttagac
tttgaagccttgaaattcacagaaatctgtttcttttgtacagtcaccct
gactattgtgggtgggcctgttgctgtttgtattttgatggtaattccac
tctcttgggaagggttgcagatgaggagaaagtcacatactcaggtgact
tctagtaaaccatcccctaatgaataaatgagtcagtcactgggagagta
ggagggacttcccggttgg
gaattccagatccatcacattgcgaggctgtaagcaaatggcacaacctc
tctaaagagaagttctcaaatttataaaggggagaggaattgcctgcatc
tcagagctttaagaattcggtgaattaaaataatcatataaagcacttca
taagtaagaatataaggactgtcactcattcacaaatgcataaaattctg
ctgtctgctggaaaaggaaaccaggcttgtgagttaaattggttctacta
aaggaccagaatgtgtaataactaaaccctgcaaggtcccagcaagtcct
ctcaagtatccatctagcgaatggacttcttactgcaaatgcatgatagt
tcctctttatgacaaaatgggctagctttggcatgcgatcctcactgaca
ggcactgcttccatacaagtgtctgctaaattccaaagagccctagagca
ggaacctcaagttctgcttttaaatctgtgaacagtcgaacacatttgac
gttttcctaatgaaatttaggacctttaaatgggtctgcttacaaaataa
aacagcagcacacgggagaaaaatgttcaaattcaacctggccctaagga
ctgcttcacttgcttcaagcagaatgtgtatgtgtgtcataccatagcac
ccactgcagagtctgccccaggagctgaagacagagcgctggtccataca
catggaatcagaaactaaaagaggaccatcttctcagcaaatgatgctgg
gccagggggccatccacgtgaaatgagctcactttgcccacttcccaaca
tgatgaaaaattcaacttagactgtgtgctaaaaaaattttagaaactaa
attgataagcttctggaacaaaatatagaacaaaaccaagccaaagtttc
tcacacatctccaaactcatgagacccaaaaggcagacttgatgaactca
cttcaccaataattgaaactatcatcaaaaacatttgcaaaaaaaaaaaa
ttaaagccatagcttgattaaatgtattttaagcacatgtcttgtatatt
attttcatcaagtacatgtaaaaatcgcatttcatatagaatttaattat
ttaacaccgagggtcaacagatggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_46357293_46358161
seq2: B6Ng01-232F17.b_48_916

seq1  GAATTCTTCAGATAACTGTAGGCTATGTCAGGTTGACATCTGAGGCTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGATAACTGTAGGCTATGTCAGGTTGACATCTGAGGCTAAC  50

seq1  TAGGAGAAAAGCCATTATCTAAGGCCCCAGTGTTAAATTTTGGAATACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAAAAGCCATTATCTAAGGCCCCAGTGTTAAATTTTGGAATACTA  100

seq1  AGAGAGGTTAAAAAATTGAAACATTCTTTTCTTTCTGCACCGTGAAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTTAAAAAATTGAAACATTCTTTTCTTTCTGCACCGTGAAGCCT  150

seq1  GGCATCATAGCTTATTGCTAATTCTGTACAGGGCATAGATTAGTCCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCATAGCTTATTGCTAATTCTGTACAGGGCATAGATTAGTCCTTTC  200

seq1  AGCCTTTGGTGCAGGGAAATGTCTTTCATCTACTCTGAGGGACCTGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGGTGCAGGGAAATGTCTTTCATCTACTCTGAGGGACCTGTACT  250

seq1  TCCTCCTGCCTTTAGCCCCAGCACCTGGGAAGGGCTGAAAAATCCTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGCCTTTAGCCCCAGCACCTGGGAAGGGCTGAAAAATCCTCCTG  300

seq1  TGAGTCAAAACTATAACAACGCTCAGTAGCATGGAGGTGTTATCCTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAAAACTATAACAACGCTCAGTAGCATGGAGGTGTTATCCTTTGA  350

seq1  GCATTTAGATTTTTCCAACAAAGTATGAATGTTTGAGTCCTTTCAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGATTTTTCCAACAAAGTATGAATGTTTGAGTCCTTTCAGAATT  400

seq1  TGTATAGTGATTGCCAAGAAAACAGAATTAGGAATTAAAGTCTTCAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGTGATTGCCAAGAAAACAGAATTAGGAATTAAAGTCTTCAGGGG  450

seq1  CCATTAGATCATACATCAGAGTCTTCCTGCCTAGGATTAACAAACTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGATCATACATCAGAGTCTTCCTGCCTAGGATTAACAAACTTCCT  500

seq1  TATGAAAGTGGTCTGAGCTATGCTTGGGACATAGGAGGCCTTGGGTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGTGGTCTGAGCTATGCTTGGGACATAGGAGGCCTTGGGTAACA  550

seq1  CACACACACACACACACACACACACACACACACACACACACACACTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACTCCAG  600

seq1  GAAACAGGTCCTTCCGGGGCACTGACTCTACTTCCGCCTTGGTTTTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGTCCTTCCGGGGCACTGACTCTACTTCCGCCTTGGTTTTAGAC  650

seq1  TTTGAAGCCTTGAAATTCACAGAAATCTGTTTCTTTTGTACAGTCACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCCTTGAAATTCACAGAAATCTGTTTCTTTTGTACAGTCACCCT  700

seq1  GACTATTGTGGGTGGGCCTGTTGCTGTTTGTATTTTGATGGTAATTCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTGTGGGTGGGCCTGTTGCTGTTTGTATTTTGATGGTAATTCCAC  750

seq1  TCTCTTGGGAAGGGTTGCAGATGAGGAGAAAGTCACATACTCAGGTGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGGAAGGGTTGCAGATGAGGAGAAAGTCACATACTCAGGTGACT  800

seq1  TCTAGTAAACCATCCCCTAATGAATAAATGAGTCAGTCACTGGGAGAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAAACCATCCCCTAATGAATAAATGAGTCAGTCACTGGGAGAGTA  850

seq1  GGAGGGACTTCCCGGTTGG  869
      |||||||||||||||||||
seq2  GGAGGGACTTCCCGGTTGG  869

seq1: chr14_46496718_46497849
seq2: B6Ng01-232F17.g_69_1195 (reverse)

seq1  TGACCCCTCTGTT-------GGTTTAAATTAATTAAATTTCCTTATTATT  43
      ||| || ||||||       ||| | || ||||||||||    |||   |
seq2  TGA-CCATCTGTTGACCCTCGGTGTTAAATAATTAAATT---CTAT--AT  44

seq1  TAAATGCGATTTTTTACATGTACTTGATTGAAAAT-ATATACCAGACATG  92
       |||||||| ||||||||||||||||| ||||||| |||||| |||||||
seq2  GAAATGCGA-TTTTTACATGTACTTGA-TGAAAATAATATACAAGACATG  92

seq1  TGCCTTTAAAATACATTTTAACCAAGCCTATGGCTTTAA-TTTTTTTTTT  141
      |||  |||||||||| ||||| |||| |||||||||||| ||||||||||
seq2  TGC--TTAAAATACA-TTTAATCAAG-CTATGGCTTTAATTTTTTTTTTT  138

seq1  TGCAAATGTTTTTGATGAATAGTTTTCAATTATTGGTGAAGTTGAGTTCA  191
      ||||||||||||||||| |||| |||||||||||||||||| ||||||||
seq2  TGCAAATGTTTTTGATG-ATAG-TTTCAATTATTGGTGAAG-TGAGTTCA  185

seq1  TCAAGTCTGCCTTTTGGGTCTCATGAGTTTGGAGATGTGTGAGAAACTTT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTGCCTTTTGGGTCTCATGAGTTTGGAGATGTGTGAGAAACTTT  235

seq1  GGCTTGGTTTTGTTCTATATTTTGTTCCAGAAGCTTATCAATTTAGTTTC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGTTTTGTTCTATATTTTGTTCCAGAAGCTTATCAATTTAGTTTC  285

seq1  TAAAATTTTTTTAGCACACAGTCTAAGTTGAATTTTTCATCATGTTGGGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTTTTAGCACACAGTCTAAGTTGAATTTTTCATCATGTTGGGA  335

seq1  AGTGGGCAAAGTGAGCTCATTTCACGTGGATGGCCCCCTGGCCCAGCATC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCAAAGTGAGCTCATTTCACGTGGATGGCCCCCTGGCCCAGCATC  385

seq1  ATTTGCTGAGAAGATGGTCCTCTTTTAGTTTCTGATTCCATGTGTATGGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGAGAAGATGGTCCTCTTTTAGTTTCTGATTCCATGTGTATGGA  435

seq1  CCAGCGCTCTGTCTTCAGCTCCTGGGGCAGACTCTGCAGTGGGTGCTATG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGCTCTGTCTTCAGCTCCTGGGGCAGACTCTGCAGTGGGTGCTATG  485

seq1  GTATGACACACATACACATTCTGCTTGAAGCAAGT-AAGCAGTCCTTAGG  540
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTATGACACACATACACATTCTGCTTGAAGCAAGTGAAGCAGTCCTTAGG  535

seq1  GCCAGGTTGAATTTGAACATTTTTCTCCCGTGTGCTGCTGTTTTATTTTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTTGAATTTGAACATTTTTCTCCCGTGTGCTGCTGTTTTATTTTG  585

seq1  TAAGCAGACCCATTTAAAGGTCCTAAATTTCATTAGGAAAACGTCAAATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGACCCATTTAAAGGTCCTAAATTTCATTAGGAAAACGTCAAATG  635

seq1  TGTTCGACTGTTCACAGATTTAAAAGCAGAACTTGAGGTTCCTGCTCTAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGACTGTTCACAGATTTAAAAGCAGAACTTGAGGTTCCTGCTCTAG  685

seq1  GGCTCTTTGGAATTTAGCAGACACTTGTATGGAAGCAGTGCCTGTCAGTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTTGGAATTTAGCAGACACTTGTATGGAAGCAGTGCCTGTCAGTG  735

seq1  AGGATCGCATGCCAAAGCTAGCCCATTTTGTCATAAAGAGGAACTATCAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCGCATGCCAAAGCTAGCCCATTTTGTCATAAAGAGGAACTATCAT  785

seq1  GCATTTGCAGTAAGAAGTCCATTCGCTAGATGGATACTTGAGAGGACTTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCAGTAAGAAGTCCATTCGCTAGATGGATACTTGAGAGGACTTG  835

seq1  CTGGGACCTTGCAGGGTTTAGTTATTACACATTCTGGTCCTTTAGTAGAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACCTTGCAGGGTTTAGTTATTACACATTCTGGTCCTTTAGTAGAA  885

seq1  CCAATTTAACTCACAAGCCTGGTTTCCTTTTCCAGCAGACAGCAGAATTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTAACTCACAAGCCTGGTTTCCTTTTCCAGCAGACAGCAGAATTT  935

seq1  TATGCATTTGTGAATGAGTGACAGTCCTTATATTCTTACTTATGAAGTGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTTGTGAATGAGTGACAGTCCTTATATTCTTACTTATGAAGTGC  985

seq1  TTTATATGATTATTTTAATTCACCGAATTCTTAAAGCTCTGAGATGCAGG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGATTATTTTAATTCACCGAATTCTTAAAGCTCTGAGATGCAGG  1035

seq1  CAATTCCTCTCCCCTTTATAAATTTGAGAACTTCTCTTTAGAGAGGTTGT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCTCTCCCCTTTATAAATTTGAGAACTTCTCTTTAGAGAGGTTGT  1085

seq1  GCCATTTGCTTACAGCCTCGCAATGTGATGGATCTGGAATTC  1132
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGCTTACAGCCTCGCAATGTGATGGATCTGGAATTC  1127