BAC Information

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BAC

Clone NameB6Ng01-233M20
Chromosome19 (Build37)14 (Build37)
Map Location 17,332,706 - 17,332,745108,676,914 - 108,677,964
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGnaq, LOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
Downstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233M20.bB6Ng01-233M20.g
ACCGA045756GA045757
length2261,056
definitionB6Ng01-233M20.b B6Ng01-233M20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,332,706 - 17,332,745)(108,676,914 - 108,677,964)
sequence
tttaattagctctgtacccaactttttagtgggtttatatgaatttctcg
agttcagcttctaattccaagttaattctaattggaggtcagaaaaagta
ataaatcaaacaagatatgacagaatgaattaatagaataagccaacagt
catgaggacagttaaaagatacaatttaagggaggatgtatatatatata
tatggagagagagagagagagagaga

gaattctgggaggggggccaggagctgggcaatggctggtttgtatataa
attgatttttaaaattaaaacattttaaaataatttggaggagacacaga
tggttaaaattctttccttccagtaggcatgcataaggtgaaaattaaag
ctctattgtctgtagtaattatgtagtttcttatagaataatttaaagtg
aatgaagcaaaattaagatacctttatactggaccaagtatatgaagaca
gagtaaaatatctggtaatacatttttaaaatcaggactatcaaatgcaa
ataatatctgaattattaaattaaaaataacatagtatctaatttccata
atgcactgagaaaaagaattggttaagatttcttcaatgaaaatactaca
ttttgctaaaacaattacaagttaaaaaagggaaaatcaaaatatatgtg
tgatttaattatcatttatgtagtctgactccatgaaaaatatattacat
agagtaaagtcattaaaggttatattagataattcattctacattaggcc
tattaagtgggttaatatatggatggttgggtttagcttatgattaattt
ggttagtgtagcatggcctttagagtatataataataaaataataataat
taatgtgcctttttcacagtaagaattactttgttctattaaaacctata
tgtggataatgctttcagtaaaataatgacattactagcaacaataaagt
aatataaaattgtgcagtactttctatattatagtgttctaagatcccag
gagaaaattattgaatatcaacatttagtatgatagaaaactggtcataa
ttcacattgattattaatagatttttttcaacattttgtggtgccaagat
caagtgtctctgtgcttttggcctgagtttggcttagctcatatctcttc
attcttttatccttctgtaacacaaattgaggtaaaaactgatgccctct
aaattcatctaagtgcagtttccttccattttctgtagatcactgtttcc
cagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17332706_17332745
seq2: B6Ng01-233M20.b_234_273 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCCATATATATATATATACA  40
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCCATATATATATATATACA  40


seq1: chr14_108676914_108677964
seq2: B6Ng01-233M20.g_67_1122 (reverse)

seq1  AAACTGAG-AACAGTGATCTACAGAAAATGGAA-GAAACTGCACCTAGAT  48
      |||||| | |||||||||||||||||||||||| |||||||||| |||||
seq2  AAACTGGGAAACAGTGATCTACAGAAAATGGAAGGAAACTGCACTTAGAT  50

seq1  GAATTTAGA-GGCATCAGTTTTTACCTCAATTTGTTGTTAACAGAAGGAT  97
      ||||||||| |||||||||||||||||||||||| |||| ||||||||||
seq2  GAATTTAGAGGGCATCAGTTTTTACCTCAATTTG-TGTT-ACAGAAGGAT  98

seq1  -AAAGAATGAAGAGATTATGAGCTAAGCCAAACTCA-GCCAAAAGCACAG  145
       |||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  AAAAGAATGAAGAGA-TATGAGCTAAGCCAAACTCAGGCCAAAAGCACAG  147

seq1  AGACACTTGATCTTGGCACCACAAAATGT--GAAAAAATCTATTAATAAT  193
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  AGACACTTGATCTTGGCACCACAAAATGTTGAAAAAAATCTATTAATAAT  197

seq1  CAATGTGAATTATGACCAGTTTTCTATCATACTAAATGTTGATATTCAAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGAATTATGACCAGTTTTCTATCATACTAAATGTTGATATTCAAT  247

seq1  AATTTTCTCCTGGGATCTTAGAACACTATAATATAGAAAGTACTGCACAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTCCTGGGATCTTAGAACACTATAATATAGAAAGTACTGCACAA  297

seq1  TTTTATATTACTTTATTGTTGCTAGTAATGTCATTATTTTACTG-AAGCA  342
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTTATATTACTTTATTGTTGCTAGTAATGTCATTATTTTACTGAAAGCA  347

seq1  TTATCCACATATAGGTTTTAATAGAACAAAGTAATTCTTACTGTGAAAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCACATATAGGTTTTAATAGAACAAAGTAATTCTTACTGTGAAAAA  397

seq1  GGCACATTAATTATTATTATTTTATTATTATATACTCTAAAGGCCATGCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTAATTATTATTATTTTATTATTATATACTCTAAAGGCCATGCT  447

seq1  ACACTAACCAAATTAATCATAAGCTAAACCCAACCATCCATATATTAACC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAACCAAATTAATCATAAGCTAAACCCAACCATCCATATATTAACC  497

seq1  CACTTAATAGGCCTAATGTAGAATGAATTATCTAATATAACCTTTAATGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAATAGGCCTAATGTAGAATGAATTATCTAATATAACCTTTAATGA  547

seq1  CTTTACTCTATGTAATATATTTTTCATGGAGTCAGACTACATAAATGATA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTCTATGTAATATATTTTTCATGGAGTCAGACTACATAAATGATA  597

seq1  ATTAAATCACACATATATTTTGATTTTCCCTTTTTTAACTTGTAATTGTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCACACATATATTTTGATTTTCCCTTTTTTAACTTGTAATTGTT  647

seq1  TTAGCAAAATGTAGTATTTTCATTGAAGAAATCTTAACCAATTCTTTTTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAAATGTAGTATTTTCATTGAAGAAATCTTAACCAATTCTTTTTC  697

seq1  TCAGTGCATTATGGAAATTAGATACTATGTTATTTTTAATTTAATAATTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCATTATGGAAATTAGATACTATGTTATTTTTAATTTAATAATTC  747

seq1  AGATATTATTTGCATTTGATAGTCCTGATTTTAAAAATGTATTACCAGAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTATTTGCATTTGATAGTCCTGATTTTAAAAATGTATTACCAGAT  797

seq1  ATTTTACTCTGTCTTCATATACTTGGTCCAGTATAAAGGTATCTTAATTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTCTGTCTTCATATACTTGGTCCAGTATAAAGGTATCTTAATTT  847

seq1  TGCTTCATTCACTTTAAATTATTCTATAAGAAACTACATAATTACTACAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATTCACTTTAAATTATTCTATAAGAAACTACATAATTACTACAG  897

seq1  ACAATAGAGCTTTAATTTTCACCTTATGCATGCCTACTGGAAGGAAAGAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGAGCTTTAATTTTCACCTTATGCATGCCTACTGGAAGGAAAGAA  947

seq1  TTTTAACCATCTGTGTCTCCTCCAAATTATTTTAAAATGTTTTAATTTTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACCATCTGTGTCTCCTCCAAATTATTTTAAAATGTTTTAATTTTA  997

seq1  AAAATCAATTTATATACAAACCAGCCATTGCCCAGCTCCTGGCCCCCCTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAATTTATATACAAACCAGCCATTGCCCAGCTCCTGGCCCCCCTC  1047

seq1  CCAGAATTC  1051
      |||||||||
seq2  CCAGAATTC  1056


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