BAC Information

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BAC

Clone NameB6Ng01-234D02
Chromosome14 (Build37)
Map Location 84,378,855 - 84,531,877
singlet/doubletdoublet
Overlap geneLOC100043280, LOC100043285
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
Downstream genePcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234D02.bB6Ng01-234D02.g
ACCGA046024GA046025
length1,1171,160
definitionB6Ng01-234D02.b B6Ng01-234D02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,530,758 - 84,531,877)(84,378,855 - 84,380,030)
sequence
gaattcattgtttttaatatctgagcagtacttcatctctttccttggtg
atcatagtctgttaatagatgaaaaattcaaacaaaatttcttgttgttc
taccttgtcatctgcagttattgttacttttcttttattcattcattttt
tcactcactcattcattcacttatctttaggctaccattagccattattc
ttcttttattattattattttttcctttattgaccatttcttcagtgacc
tgtttgcaatccatactatcttcagaagtatagtcagcttctgtcttatg
aaaagcttcttctttgttatctcataaacatacatgttttccagtacatc
attacacaggctcttctcaagagaagatacatacacacacacacacacac
acacacacacacacacacacacacacacacaggtgtgtgataatcttaat
cattgtcattgcaaacacaaagaaagaaagaaagaaaaagaaagaaagaa
aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagaaagaaag
aaagaaagaaaggaaggaagaaaggaagaaaggaagaaacttttattgtc
accttcactgaatttttccttaaaacattagattctctaatacagcccat
tgtcttattacacaggagtcattagcacacttactaataggatattcttt
tcatcaactaaatttttatatgattactaatatgatgtgtggatactatt
actcagcaatgtgtgtatatccttacagttaattcgattagttctatact
gaaattatatattatagttatagtttgccctaagttaattaatactttct
tctttccttcaagatatattcacaaagcagtatactttactgagatttct
agtcattctatttatgtttttatcacgatgtaaacactgggcaaaaagta
tgtcttttcagctatagagatctaatacagaccacctgtgtctaccacat
agaaccatttgttttgttgtttttgttttcgctgaaaggagtgaaaataa
attattatattgaacgaggccttatagagttgaacttagttaatgtcaca
aaatacctcagcttcaa

gaattctatcgaaagtcaggacaaaatgtatatttgaaataaattgtagt
actctaaaatgaagattatagaattccatttatgctagatttttaatata
ttaaaatctctggcttgggggtagatagcagaaatgtttcttctcaactc
gaaaagtaatttctttgtcattatctcttctaatttgaaagtaagtgtca
ttctcttacttcatttagttgtcacaaactcataggatgtgttaaatata
tttcataacaaaattggccctaagttcaagtttgtgtagaataacaaatg
taaactttgtcttttgagaatgaggcaaacatacaactatttatagcata
cccttgtaatatattagagaatgtgaaaaatgcatcaacaagaacctgac
agagtctttataatacagtattttacaagaatatagtttatatagattac
aatcctgtattcataaatacagcatatgaaaataaattacaaattacaaa
aacaacaaaataggcagagcaagaaagaaaacaaatataaatgtttgatt
tgtgcataccacagattttacacaatttcattatcatataaatagcttgc
atatataatcctctatccgttaattctgataaatgcaagagtaaaaatta
agattaatagagtttcctgtgagagatttgctgcatgttctactggcagc
acttctcagcatgtttatgttgctctctgagaagctttgtgcattccatt
actgatttacaatatatgcttgcttgtgcttttatagactgctaagctct
gtaaaattgctattttattctaaacttttgatgcttctattttgccagtt
gtgaatctttaattttgctgatcttacaagagcaaatgaaacattcaaag
acaaaaattaaaaatgcaaatattcattacactcttccgtaatctacagt
tatcctgtcatcttcctattatatataatcataatgtttttatcccatga
aatgactcttgtgaagttgaggagcatttatcacacatctctcatgcact
ggcagttcaccattagaagaaaagtcagaaaacctaatcatcatcagact
cagaatacttacacttgcaaaaccttatgtaagaagtaatggcaatcatt
ccatataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84530758_84531877
seq2: B6Ng01-234D02.b_47_1163 (reverse)

seq1  TTGAAGCTGAAGTTATTTTGTGACATTTACTAA-ATCAACTCTATTAGGC  49
      ||||||||| || |||||||||||||| |||||  |||||||||| ||||
seq2  TTGAAGCTG-AGGTATTTTGTGACATTAACTAAGTTCAACTCTATAAGGC  49

seq1  CTTTGGTCATTAT-ATAATTTA-TTTCACTCCTTCAAGGCAAAAAAAAAA  97
      | | | ||| ||| |||||||| |||||||||||  ||       |||| 
seq2  C-TCGTTCAATATAATAATTTATTTTCACTCCTTTCAG-----CGAAAAC  93

seq1  AAAAAAAAAAAAAAAAAAGGTTCTATGTGGTAGACCACA-GTTGTCTGTA  146
      ||||| || |||| ||| |||||||||||||||| |||| || |||||||
seq2  AAAAACAACAAAACAAATGGTTCTATGTGGTAGA-CACAGGTGGTCTGTA  142

seq1  TTAGATCTCTATAGCTGAAAAGACATACTTTTTG-CCAGTGTTTACATCG  195
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTAGATCTCTATAGCTGAAAAGACATACTTTTTGCCCAGTGTTTACATCG  192

seq1  TGATAAAAACATAAATAGAATGACTAGAAATCTCAGTAAAGTATACTGCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAACATAAATAGAATGACTAGAAATCTCAGTAAAGTATACTGCT  242

seq1  TTGTGAATATATCTTGAAGGAAAGAAGAAAGTATTAATTAACTTAGGGCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATATATCTTGAAGGAAAGAAGAAAGTATTAATTAACTTAGGGCA  292

seq1  AACTATAACTATAATATATAATTTCAGTATAGAACTAATCGAATTAACTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAACTATAATATATAATTTCAGTATAGAACTAATCGAATTAACTG  342

seq1  TAAGGATATACACACATTGCTGAGTAATAGTATCCACACATCATATTAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATATACACACATTGCTGAGTAATAGTATCCACACATCATATTAGT  392

seq1  AATCATATAAAAATTTAGTTGATGAAAAGAATATCCTATTAGTAAGTGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATAAAAATTTAGTTGATGAAAAGAATATCCTATTAGTAAGTGTG  442

seq1  CTAATGACTCCTGTGTAATAAGACAATGGGCTGTATTAGAGAATCTAATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGACTCCTGTGTAATAAGACAATGGGCTGTATTAGAGAATCTAATG  492

seq1  TTTTAAGGAAAAATTCAGTGAAGGTGACAATAAAAGTTTCTTCCTTTCTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGAAAAATTCAGTGAAGGTGACAATAAAAGTTTCTTCCTTTCTT  542

seq1  CCTTTCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCC  592

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTTTCTTTCTTTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTTTCTTTCTTTC  642

seq1  TTTCTTTGTGTTTGCAATGACAATGATTAAGATTATCACACACCTGTGTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTGTTTGCAATGACAATGATTAAGATTATCACACACCTGTGTG  692

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATC  742

seq1  TTCTCTTGAGAAGAGCCTGTGTAATGATGTACTGGAAAACATGTATGTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGAGAAGAGCCTGTGTAATGATGTACTGGAAAACATGTATGTTT  792

seq1  ATGAGATAACAAAGAAGAAGCTTTTCATAAGACAGAAGCTGACTATACTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATAACAAAGAAGAAGCTTTTCATAAGACAGAAGCTGACTATACTT  842

seq1  CTGAAGATAGTATGGATTGCAAACAGGTCACTGAAGAAATGGTCAATAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATAGTATGGATTGCAAACAGGTCACTGAAGAAATGGTCAATAAA  892

seq1  GGAAAAAATAATAATAATAAAAGAAGAATAATGGCTAATGGTAGCCTAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATAATAATAATAAAAGAAGAATAATGGCTAATGGTAGCCTAAA  942

seq1  GATAAGTGAATGAATGAGTGAGTGAAAAAATGAATGAATAAAAGAAAAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTGAATGAATGAGTGAGTGAAAAAATGAATGAATAAAAGAAAAGT  992

seq1  AACAATAACTGCAGATGACAAGGTAGAACAACAAGAAATTTTGTTTGAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAACTGCAGATGACAAGGTAGAACAACAAGAAATTTTGTTTGAAT  1042

seq1  TTTTCATCTATTAACAGACTATGATCACCAAGGAAAGAGATGAAGTACTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCTATTAACAGACTATGATCACCAAGGAAAGAGATGAAGTACTG  1092

seq1  CTCAGATATTAAAAACAATGAATTC  1120
      |||||||||||||||||||||||||
seq2  CTCAGATATTAAAAACAATGAATTC  1117


seq1: chr14_84378855_84380030
seq2: B6Ng01-234D02.g_65_1224

seq1  GAATTCTATCGAAAGTCAGGACAAAATGTATATTTGAAATAAATTGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCGAAAGTCAGGACAAAATGTATATTTGAAATAAATTGTAGT  50

seq1  ACTCTAAAATGAAGATTATAGAATTCCATTTATGCTAGATTTTTAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAAATGAAGATTATAGAATTCCATTTATGCTAGATTTTTAATATA  100

seq1  TTAAAATCTCTGGCTTGGGGGTAGATAGCAGAAATGTTTCTTCTCAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCTCTGGCTTGGGGGTAGATAGCAGAAATGTTTCTTCTCAACTC  150

seq1  GAAAAGTAATTTCTTTGTCATTATCTCTTCTAATTTGAAAGTAAGTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAATTTCTTTGTCATTATCTCTTCTAATTTGAAAGTAAGTGTCA  200

seq1  TTCTCTTACTTCATTTAGTTGTCACAAACTCATAGGATGTGTTAAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTACTTCATTTAGTTGTCACAAACTCATAGGATGTGTTAAATATA  250

seq1  TTTCATAACAAAATTGGCCCTAAGTTCAAGTTTGTGTAGAATAACAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAACAAAATTGGCCCTAAGTTCAAGTTTGTGTAGAATAACAAATG  300

seq1  TAAACTTTGTCTTTTGAGAATGAGGCAAACATACAACTATTTATAGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTGTCTTTTGAGAATGAGGCAAACATACAACTATTTATAGCATA  350

seq1  CCCTTGTAATATATTAGAGAATGTGAAAAATGCATCAACAAGAACCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTAATATATTAGAGAATGTGAAAAATGCATCAACAAGAACCTGAC  400

seq1  AGAGTCTTTATAATACAGTATTTTACAAGAATATAGTTTATATAGATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTTATAATACAGTATTTTACAAGAATATAGTTTATATAGATTAC  450

seq1  AATCCTGTATTCATAAATACAGCATATGAAAATAAATTACAAATTACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGTATTCATAAATACAGCATATGAAAATAAATTACAAATTACAAA  500

seq1  AACAACAAAATAGGCAGAGCAAGAAAGAAAACAAATATAAATGTTTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAATAGGCAGAGCAAGAAAGAAAACAAATATAAATGTTTGATT  550

seq1  TGTGCATACCACAGATTTTACACAATTTCATTATCATATAAATAGCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATACCACAGATTTTACACAATTTCATTATCATATAAATAGCTTGC  600

seq1  ATATATAATCCTCTATCCGTTAATTCTGATAAATGCAAGAGTAAAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATCCTCTATCCGTTAATTCTGATAAATGCAAGAGTAAAAATTA  650

seq1  AGATTAATAGAGTTTCCTGTGAGAGATTTGCTGCATGTTCTACTGGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAATAGAGTTTCCTGTGAGAGATTTGCTGCATGTTCTACTGGCAGC  700

seq1  ACTTCTCAGCATGTTTATGTTGCTCTCTGAGAAGCTTTGTGCATTCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCAGCATGTTTATGTTGCTCTCTGAGAAGCTTTGTGCATTCCATT  750

seq1  ACTGATTTACAATATATGCTTGCTTGTGCTTTTATAGACTGCTAAGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTACAATATATGCTTGCTTGTGCTTTTATAGACTGCTAAGCTCT  800

seq1  GTAAAATTGCTATTTTATTCTAAACTTTTGATGCTTCTATTTTGCCAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTGCTATTTTATTCTAAACTTTTGATGCTTCTATTTTGCCAGTT  850

seq1  GTGAATCTTTAATTTTGCTGATCTTACAAGAGCAAATGAAACATTCAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCTTTAATTTTGCTGATCTTACAAGAGCAAATGAAACATTCAAAG  900

seq1  ACAAAAATTAAAAATGCAAATATTCATTACACTCTTCCGTAATCTACAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTAAAAATGCAAATATTCATTACACTCTTCCGTAATCTACAGT  950

seq1  TATCCTGTCATCTTCCTTATTA-ATATAATAATTCATAATGTTTTTTATC  999
      |||||||||||||||| ||||| ||||||    |||||||| ||||||||
seq2  TATCCTGTCATCTTCC-TATTATATATAA----TCATAATG-TTTTTATC  994

seq1  CCATGAAATGACTCCTTTGTGAAGTTGAGGAGCATTTATCACACATCTCT  1049
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  CCATGAAATGACTC--TTGTGAAGTTGAGGAGCATTTATCACACATCTCT  1042

seq1  CATGCACTGGCAGTTCAACAATAG-AGAAAAGTTCAAGAAAACCCTAATT  1098
      ||||||||||||||||| || ||| ||||||||   |||||| ||||| |
seq2  CATGCACTGGCAGTTCACCATTAGAAGAAAAGT--CAGAAAA-CCTAA-T  1088

seq1  CATTCATCAGACTCAGAATTACTTACCACTTGCAAAAACTTATGTAAAGA  1148
      || ||||||||||||||| |||||| ||||||||||| ||||||| ||||
seq2  CA-TCATCAGACTCAGAA-TACTTA-CACTTGCAAAACCTTATGT-AAGA  1134

seq1  AGTAATTGCAATCATTCCCATTATAAAA  1176
      |||||| |||||||||||   |||||||
seq2  AGTAATGGCAATCATTCC--ATATAAAA  1160


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