BAC Information

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BAC

Clone NameB6Ng01-234D13
Chromosome14 (Build37)
Map Location 96,961,721 - 97,047,913
singlet/doubletdoublet
Overlap genenone
Upstream gene4921530L21Rik, Klhl1
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234D13.bB6Ng01-234D13.g
ACCGA046043GA046044
length1,1881,139
definitionB6Ng01-234D13.b B6Ng01-234D13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,961,721 - 96,962,919)(97,046,774 - 97,047,913)
sequence
gaattcacatgtttctgcactaacactgactatgagtaaagtgtcacagc
atgtgttgttcctattttggaatctattgacagtttagtgaagatcacca
gtatgctgagaagctgacacgctcagcactcttcccttgtttcctgggag
aagcatgagcttccataagctatgttggtaaatagtcattagtgacaatg
gatgaaccacactttgaaattagttccaaatttttatttctctggtcttt
gatatattgtgctttgggtcagtaatcacctgtctctatggtttttgctt
ttagttatacactaaaagtccaaatgaattctttcaggactcacacaaga
aaccgtgttgctaacagcagaatataatgacatgaattctgtgtgacatt
ctaattgccattcaatgtggcacagccctgaagcatttcactttcacatt
aggatgtgatcactaaaagaagccactcccaatttctcccatttacaatc
cagtggaaattttaaatgcaatctcatagattattctacttttgtagaca
gtttcacactgagtttctagttcgtgtgtacagccaacatttgaaataaa
atactttgccacttcatattttgtagtcacagaaatattagaaaagccat
acaaattatatcttctcataaaattaggatgaggtccctatacgttctgt
tgaaatgatagtagttctgttattatcttgaacagatttctttcatatta
aaaaaatcgaacatgaaatattctgaaaatatgcactaaaattgaagtac
attttactcagcgataacacaatgcttacatgaattaaaattcaaactaa
aagtgcatcatctaaaagaatataaacaacttagaaccagcaactaaata
cccagacaccagcatggtgctttccataccagagctttaaacatcattgc
atctctcattattttctgactttcagcccatctctttgagtgtgagccca
actctcctgtgggggaatcttgttctcagctctgctttgagacctcatga
actacaacaaaaaagacattcttttctgtccacacagtgcatattccacg
gaggtatcatgatcatctgtatgggggtgagaaggatcattctctagaaa
gccgctgtgaggtcttagaaaaatatatgtgtggttct

gaattcacaggcccaatttaaactacattaggggacttcctgggagtagg
tgatcttcatcttgctccatctatagggacattccagaaccattaatggg
gcatgggggctggaaactcttgcagaggagatctggaaactgtagctgag
gaagtctggaaactgatgctgacccattgttcttacctcaagccaggtag
cagggcagcttctgaaggcagggcagtttctgactagctgcttgaagcct
gggtttttttctagtaattgacttgtctggacttgcccagttcttaggcc
taatcttctgagctgcctgtcatggacttagcctgtttcaatatcaaaag
aactaagatcccaaggtaaaactatttattgatacttctgttcagcttcc
aagaagacctgtgcatcatatatgtatgtctagtttagagtaaccatttc
tctagaattcttaggtttctcctaaaatgtgttttttttcctagatgatg
gaataaattaaagaatatatgttctttatttctctgttacccttacttca
tattatttataaaaatgtgtctaatcttgagctaggagctcacatgcaag
cactatagaaagtaattcttgacattagagaataagatgactgtcagtgt
atgtatgttcaaaatacatttaaaatatttctgaatagctctactttccc
tttccatagcctttacatttataattgcttattcaatccccatggcctta
tgaaacctacatttctaggataaagtaaaaaaaatctccctttttctatt
ttgttccatctgaagctatcatagaacagatgatgcgtctgtcaagtgaa
ttaactaataaggaagcagacattctgaacatgatctataatttagataa
ttatttttcttataatttttcattgtactatgtttactactatagttttt
atatctggtgtgttctttatgggtaccatgaattgggaaatgaatagaat
cacaggtttggggaaatttttcctcttattatctttaaatggcaaggaga
tatacatgtaattggatatttcagtaaataatcatattttcctcttggaa
tctaatcataaagttttcaatctggaatcattacattag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_96961721_96962919
seq2: B6Ng01-234D13.b_50_1237

seq1  GAATTCACATGTTTCTGCACTAACACTGACTATGAGTAAAGTGTCACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGTTTCTGCACTAACACTGACTATGAGTAAAGTGTCACAGC  50

seq1  ATGTGTTGTTCCTATTTTGGAATCTATTGACAGTTTAGTGAAGATCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTGTTCCTATTTTGGAATCTATTGACAGTTTAGTGAAGATCACCA  100

seq1  GTATGCTGAGAAGCTGACACGCTCAGCACTCTTCCCTTGTTTCCTGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTGAGAAGCTGACACGCTCAGCACTCTTCCCTTGTTTCCTGGGAG  150

seq1  AAGCATGAGCTTCCATAAGCTATGTTGGTAAATAGTCATTAGTGACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGAGCTTCCATAAGCTATGTTGGTAAATAGTCATTAGTGACAATG  200

seq1  GATGAACCACACTTTGAAATTAGTTCCAAATTTTTATTTCTCTGGTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACCACACTTTGAAATTAGTTCCAAATTTTTATTTCTCTGGTCTTT  250

seq1  GATATATTGTGCTTTGGGTCAGTAATCACCTGTCTCTATGGTTTTTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTGTGCTTTGGGTCAGTAATCACCTGTCTCTATGGTTTTTGCTT  300

seq1  TTAGTTATACACTAAAAGTCCAAATGAATTCTTTCAGGACTCACACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATACACTAAAAGTCCAAATGAATTCTTTCAGGACTCACACAAGA  350

seq1  AACCGTGTTGCTAACAGCAGAATATAATGACATGAATTCTGTGTGACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTGTTGCTAACAGCAGAATATAATGACATGAATTCTGTGTGACATT  400

seq1  CTAATTGCCATTCAATGTGGCACAGCCCTGAAGCATTTCACTTTCACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGCCATTCAATGTGGCACAGCCCTGAAGCATTTCACTTTCACATT  450

seq1  AGGATGTGATCACTAAAAGAAGCCACTCCCAATTTCTCCCATTTACAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGATCACTAAAAGAAGCCACTCCCAATTTCTCCCATTTACAATC  500

seq1  CAGTGGAAATTTTAAATGCAATCTCATAGATTATTCTACTTTTGTAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAATTTTAAATGCAATCTCATAGATTATTCTACTTTTGTAGACA  550

seq1  GTTTCACACTGAGTTTCTAGTTCGTGTGTACAGCCAACATTTGAAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACACTGAGTTTCTAGTTCGTGTGTACAGCCAACATTTGAAATAAA  600

seq1  ATACTTTGCCACTTCATATTTTGTAGTCACAGAAATATTAGAAAAGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGCCACTTCATATTTTGTAGTCACAGAAATATTAGAAAAGCCAT  650

seq1  ACAAATTATATCTTCTCATAAAATTAGGATGAGGTCCCTATACGTTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTATATCTTCTCATAAAATTAGGATGAGGTCCCTATACGTTCTGT  700

seq1  TGAAATGATAGTAGTTCTGTTATTATCTTGAACAGATTTCTTTCATATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGATAGTAGTTCTGTTATTATCTTGAACAGATTTCTTTCATATTA  750

seq1  AAAAAATCGAACATGAAATATTCTGAAAATATGCACTAAAATTGAAGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCGAACATGAAATATTCTGAAAATATGCACTAAAATTGAAGTAC  800

seq1  ATTTTACTCAGCGATAACACAATGCTTACATGAATTAAAATTCAAACTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTCAGCGATAACACAATGCTTACATGAATTAAAATTCAAACTAA  850

seq1  AAGTGCATCATCTAAAAGAATATAAACAACTTAGAACCAGCAACTAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATCATCTAAAAGAATATAAACAACTTAGAACCAGCAACTAAATA  900

seq1  CCCAGACACCAGCATGGTGCTTTCCATACCAGAGCTTTAAACATCATTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACACCAGCATGGTGCTTTCCATACCAGAGCTTTAAACATCATTGC  950

seq1  ATCTCTCATTATTTTCTGACTTTCAGCCCATCTCTTTGAGTGTGGAGCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATCTCTCATTATTTTCTGACTTTCAGCCCATCTCTTTGAGTGT-GAGCCC  999

seq1  AACCTCTCCTGT-GGGGAATCTTTGTTCCTCAGGCTCTTGCTTTGAGACC  1049
      || ||||||||| |||||||| ||||| |||| |||| ||||||||||||
seq2  AA-CTCTCCTGTGGGGGAATC-TTGTT-CTCA-GCTC-TGCTTTGAGACC  1044

seq1  TCATGAACCTACAAACAAAAAAAGAACAATTCTTTCTGCCCACACAGTTG  1099
      ||||||| |||| |||||||||   ||| |  |||||| |||||||| ||
seq2  TCATGAA-CTAC-AACAAAAAA--GACATTCTTTTCTGTCCACACAG-TG  1089

seq1  CATATTCCCAACGGAGGTAATCATTGATCATCTGTATGGGGTGGAAGAAG  1149
      ||||||||  |||||||| |||| ||||||||||||||||| |  |||||
seq2  CATATTCC--ACGGAGGT-ATCA-TGATCATCTGTATGGGG-GTGAGAAG  1134

seq1  GATCA-TCTCTAAGAAAAGCCCGCTGTGAGGTC-TAGAA----ATATGT-  1192
      ||||| ||||| |||||   ||||||||||||| |||||    |||||| 
seq2  GATCATTCTCT-AGAAA--GCCGCTGTGAGGTCTTAGAAAAATATATGTG  1181

seq1  TGGTTCT  1199
      |||||||
seq2  TGGTTCT  1188


seq1: chr14_97046774_97047913
seq2: B6Ng01-234D13.g_64_1202 (reverse)

seq1  CTAATGTAAATGATT-CAGATTGAAAAAATTTATGATTTAAGAATTTCAA  49
      ||||||| ||||||| ||||||| |||| |||||||||  || ||| |||
seq2  CTAATGT-AATGATTCCAGATTG-AAAACTTTATGATT--AG-ATTCCAA  45

seq1  GA-GAAAATATGATTATTTTACTGAAATATCAAATTACATGTATATTCTT  98
      || ||||||||||||| |||||||||||||| ||||||||||||| ||| 
seq2  GAGGAAAATATGATTA-TTTACTGAAATATCCAATTACATGTATA-TCTC  93

seq1  CTTGCCATTTAAAGATA--TAGAGGAAAAATTTCCCCAAA-CTGTGATTC  145
      |||||||||||||||||   |||||||||||||||||||| |||||||||
seq2  CTTGCCATTTAAAGATAATAAGAGGAAAAATTTCCCCAAACCTGTGATTC  143

seq1  TATTCATTTCCAAATTCATGGTACCCATAAAGAACACA-CAGATATAAAA  194
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  TATTCATTTCCCAATTCATGGTACCCATAAAGAACACACCAGATATAAAA  193

seq1  ACTATAGTAGTAAACATAGTACAATGAAAAATTATAAGAAAAATAATTAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGTAGTAAACATAGTACAATGAAAAATTATAAGAAAAATAATTAT  243

seq1  CTAAATTATAGATCATGTTCAGAATGTCTGCTTCCTTATTAGTTAATTCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTATAGATCATGTTCAGAATGTCTGCTTCCTTATTAGTTAATTCA  293

seq1  CTTGACAGACGCATCATCTGTTCTATGATAGCTTCAGATGGAACAAAATA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACAGACGCATCATCTGTTCTATGATAGCTTCAGATGGAACAAAATA  343

seq1  GAAAAAGGGAGATTTTTTTTACTTTATCCTAGAAATGTAGGTTTCATAAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGGAGATTTTTTTTACTTTATCCTAGAAATGTAGGTTTCATAAG  393

seq1  GCCATGGGGATTGAATAAGCAATTATAAATGTAAAGGCTATGGAAAGGGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGGGATTGAATAAGCAATTATAAATGTAAAGGCTATGGAAAGGGA  443

seq1  AAGTAGAGCTATTCAGAAATATTTTAAATGTATTTTGAACATACATACAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAGCTATTCAGAAATATTTTAAATGTATTTTGAACATACATACAC  493

seq1  TGACAGTCATCTTATTCTCTAATGTCAAGAATTACTTTCTATAGTGCTTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTCATCTTATTCTCTAATGTCAAGAATTACTTTCTATAGTGCTTG  543

seq1  CATGTGAGCTCCTAGCTCAAGATTAGACACATTTTTATAAATAATATGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAGCTCCTAGCTCAAGATTAGACACATTTTTATAAATAATATGAA  593

seq1  GTAAGGGTAACAGAGAAATAAAGAACATATATTCTTTAATTTATTCCATC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGTAACAGAGAAATAAAGAACATATATTCTTTAATTTATTCCATC  643

seq1  ATCTAGGAAAAAAAACACATTTTAGGAGAAACCTAAGAATTCTAGAGAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGAAAAAAAACACATTTTAGGAGAAACCTAAGAATTCTAGAGAAA  693

seq1  TGGTTACTCTAAACTAGACATACATATATGATGCACAGGTCTTCTTGGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACTCTAAACTAGACATACATATATGATGCACAGGTCTTCTTGGAA  743

seq1  GCTGAACAGAAGTATCAATAAATAGTTTTACCTTGGGATCTTAGTTCTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACAGAAGTATCAATAAATAGTTTTACCTTGGGATCTTAGTTCTTT  793

seq1  TGATATTGAAACAGGCTAAGTCCATGACAGGCAGCTCAGAAGATTAGGCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTGAAACAGGCTAAGTCCATGACAGGCAGCTCAGAAGATTAGGCC  843

seq1  TAAGAACTGGGCAAGTCCAGACAAGTCAATTACTAGAAAAAAACCCAGGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACTGGGCAAGTCCAGACAAGTCAATTACTAGAAAAAAACCCAGGC  893

seq1  TTCAAGCAGCTAGTCAGAAACTGCCCTGCCTTCAGAAGCTGCCCTGCTAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCAGCTAGTCAGAAACTGCCCTGCCTTCAGAAGCTGCCCTGCTAC  943

seq1  CTGGCTTGAGGTAAGAACAATGGGTCAGCATCAGTTTCCAGACTTCCTCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGAGGTAAGAACAATGGGTCAGCATCAGTTTCCAGACTTCCTCA  993

seq1  GCTACAGTTTCCAGATCTCCTCTGCAAGAGTTTCCAGCCCCCATGCCCCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTTTCCAGATCTCCTCTGCAAGAGTTTCCAGCCCCCATGCCCCA  1043

seq1  TTAATGGTTCTGGAATGTCCCTATAGATGGAGCAAGATGAAGATCACCTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGTTCTGGAATGTCCCTATAGATGGAGCAAGATGAAGATCACCTA  1093

seq1  CTCCCAGGAAGTCCCCTAATGTAGTTTAAATTGGGCCTGTGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGAAGTCCCCTAATGTAGTTTAAATTGGGCCTGTGAATTC  1139


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