BAC Information

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BAC

Clone NameB6Ng01-235E17
Chromosome14 (Build37)
Map Location 73,279,361 - 73,399,897
singlet/doubletdoublet
Overlap geneLOC100043723, LOC668487
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721
Downstream geneLOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235E17.bB6Ng01-235E17.g
ACCGA046804GA046805
length1,145979
definitionB6Ng01-235E17.b B6Ng01-235E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,279,361 - 73,280,515)(73,398,935 - 73,399,897)
sequence
gaattccatccaaacttcaagaaatggcggggtctacctaatgcaaacaa
taagaaacaagtctaaaatccaaacagataataaaatagatttttaaaaa
attagtttagcttggacaataaataggtcaaaaatttcaggtggtcagat
gaaagaattctgtataacagtaaatctggaacacccatctgacgggcgtg
ggctttggcttcttcactgtcatagctgctatcaggaaaagcttccatgt
gtcccatcatgatacagaaagaattcctttgggaatgacacatcccccag
acctgcatcctggctcaagctctctaaataataagcagtcccaagcttcc
tgggacaatgatcctgttgtggccattaggaattcagaaatctcaacctg
cctaaaatatgaaatagttaaaaacttgaatatagagattacaaagtcct
taaagcctaatattacaatttgtgttaaatgcacgaacttgtaatagaca
cgtaagagtaaaagtacttataccaaaaggaatttcttacatgagaagtt
caaaagttagtctgatgtattttatttaagaaatatgtttgggtttgggc
ttatttaaaatggagatgaggaaagtgtacttagattataatcagtgtga
ttccttttcagataacttaaaatgtttaattcattatatttacagaagtc
tttagatagtggaggagaggtattatttcttctggttgcggtctgcctat
ttggcctctgaagggtttatgtagatgcttagagtgttcaacatgaatag
gtaaaatgccaaagtcccttgtctttatggaattttcctagacgtataaa
caatctaaaaattttctaattgaaaccacaagcctttaagcaaacaatgt
tttacatgtttttatgtattcattaatttaattttgatcatcaagtaagt
cctttgtctttattaaatgcatctttgtaattaccttggcatgatggatt
tacaccttatttgtgttcttgataaaatgctgaagtctgtgtacccagca
tcctttgagcagattagtttccaccatgcagggcatgaaggctatggttc
tcctcatgtgaaagcggggtggggaacccaaatcggtactcagac
gaattctctggtcaaaggtgagtctctcagtaaaacacagcccaggagtt
tgcagccaacagaccgagacagtgggaagggggggctattccaggcagga
gatagatacctttctttttcttacattctggaaagtggtctgagagagac
cccagagcagaagtagatgccactcaaacagttccatcaaggtagaaggc
cctttgtgtagggtctagccagggccttgcatgtgtgtcttttagacatt
gttattggctcaggaaccccccaagaccaagttctcagcaccaaggagat
ttgtctgtcccacagggacagagggcagggaatgagagacaaagaggagg
aggagaaggggaaggagacaaatgagaggggaaggggtatttgttctggg
gaacaaaggactgcctctggttagagaggagacagacatggcccatagga
aagtggtggtttataaaggtaaagggggaaaccctgttttaggatgaggt
gtttaattgtaactgggcatattaactacatgtgtcaaaagggggctttt
cattactggatttccaataccttgagagctgaaccttggcagtcagcctc
aggaggaagaaatggctaaataagggaatggtccttgatggctagctttt
aggaatagaattcttttttttttttttttttattggcaaggcagagagaa
caagggagaagatcaaggcctatcagagccacatgctcaaggcccttcag
tatccacgggaccttgcaaaccaattttccatgtttgttttccagtgtct
ttagaggaagttcatgcctgaggctggatgtccactcgagtttttggccc
ttcagaccttcttcccttgttccaggccaccggtttcttcttgctagcta
gggccctcaggctggtactctagattgttttggccctgccccaaggtttc
ttagtttattgaatcaataacagcagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_73279361_73280515
seq2: B6Ng01-235E17.b_43_1187

seq1  GAATTCCATCCAAACTTCAAGAAATGGCGGGGTCTACCTAATGCAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCAAACTTCAAGAAATGGCGGGGTCTACCTAATGCAAACAA  50

seq1  TAAGAAACAAGTCTAAAATCCAAACAGATAATAAAATAGATTTTTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACAAGTCTAAAATCCAAACAGATAATAAAATAGATTTTTAAAAA  100

seq1  ATTAGTTTAGCTTGGACAATAAATAGGTCAAAAATTTCAGGTGGTCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTAGCTTGGACAATAAATAGGTCAAAAATTTCAGGTGGTCAGAT  150

seq1  GAAAGAATTCTGTATAACAGTAAATCTGGAACACCCATCTGACGGGCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATTCTGTATAACAGTAAATCTGGAACACCCATCTGACGGGCGTG  200

seq1  GGCTTTGGCTTCTTCACTGTCATAGCTGCTATCAGGAAAAGCTTCCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGGCTTCTTCACTGTCATAGCTGCTATCAGGAAAAGCTTCCATGT  250

seq1  GTCCCATCATGATACAGAAAGAATTCCTTTGGGAATGACACATCCCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATCATGATACAGAAAGAATTCCTTTGGGAATGACACATCCCCCAG  300

seq1  ACCTGCATCCTGGCTCAAGCTCTCTAAATAATAAGCAGTCCCAAGCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATCCTGGCTCAAGCTCTCTAAATAATAAGCAGTCCCAAGCTTCC  350

seq1  TGGGACAATGATCCTGTTGTGGCCATTAGGAATTCAGAAATCTCAACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAATGATCCTGTTGTGGCCATTAGGAATTCAGAAATCTCAACCTG  400

seq1  CCTAAAATATGAAATAGTTAAAAACTTGAATATAGAGATTACAAAGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATATGAAATAGTTAAAAACTTGAATATAGAGATTACAAAGTCCT  450

seq1  TAAAGCCTAATATTACAATTTGTGTTAAATGCACGAACTTGTAATAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCTAATATTACAATTTGTGTTAAATGCACGAACTTGTAATAGACA  500

seq1  CGTAAGAGTAAAAGTACTTATACCAAAAGGAATTTCTTACATGAGAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGAGTAAAAGTACTTATACCAAAAGGAATTTCTTACATGAGAAGTT  550

seq1  CAAAAGTTAGTCTGATGTATTTTATTTAAGAAATATGTTTGGGTTTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTTAGTCTGATGTATTTTATTTAAGAAATATGTTTGGGTTTGGGC  600

seq1  TTATTTAAAATGGAGATGAGGAAAGTGTACTTAGATTATAATCAGTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAAATGGAGATGAGGAAAGTGTACTTAGATTATAATCAGTGTGA  650

seq1  TTCCTTTTCAGATAACTTAAAATGTTTAATTCATTATATTTACAGAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTCAGATAACTTAAAATGTTTAATTCATTATATTTACAGAAGTC  700

seq1  TTTAGATAGTGGAGGAGAGGTATTATTTCTTCTGGTTGCGGTCTGCCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATAGTGGAGGAGAGGTATTATTTCTTCTGGTTGCGGTCTGCCTAT  750

seq1  TTGGCCTCTGAAGGGTTTATGTAGATGCTTAGAGTGTTCAACATGAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCTGAAGGGTTTATGTAGATGCTTAGAGTGTTCAACATGAATAG  800

seq1  GTAAAATGCCAAAGTCCCTTGTCTTTATGGAA-TTTCCTAGACGTATAAA  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTAAAATGCCAAAGTCCCTTGTCTTTATGGAATTTTCCTAGACGTATAAA  850

seq1  CAATCTAAAAATTTTCTAATTG-AACCACAAGCC-TTAAGCAAACAATGT  897
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  CAATCTAAAAATTTTCTAATTGAAACCACAAGCCTTTAAGCAAACAATGT  900

seq1  TTTACATGTTTTTATGTATTCAATTAATTTAATTTTGATCATCAAGTAAG  947
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTACATGTTTTTATGTATTC-ATTAATTTAATTTTGATCATCAAGTAAG  949

seq1  TCCTTTTGTCTTTAATTAAATGCATCTTTGTTAATTACCTTTGGCATGAT  997
      ||| ||||||||| |||||||||||||||| |||||||| ||||||||||
seq2  TCC-TTTGTCTTT-ATTAAATGCATCTTTG-TAATTACC-TTGGCATGAT  995

seq1  GGATTTACACCTTATTTTGTGTTCCTTGATAAAAAAGGCTGGAGTCTGTG  1047
      |||||||||||||| |||||||| ||||||  |||| |||| ||||||||
seq2  GGATTTACACCTTA-TTTGTGTT-CTTGAT--AAAATGCTGAAGTCTGTG  1041

seq1  TACCCCAGCATCCTTTGAGCAGAATAAGTTTCCACACAATTGCAGGGCA-  1096
      || ||||||||||||||||||| || ||||||||| ||  ||||||||| 
seq2  TA-CCCAGCATCCTTTGAGCAG-ATTAGTTTCCAC-CA--TGCAGGGCAT  1086

seq1  GAA-GCAATGGGTTCTCCTCTAATGTTGAAAGC-GGGTGGGGAA-ACAAA  1143
      ||| || || ||||||||||  ||| ||||||| ||||||||||  ||||
seq2  GAAGGCTAT-GGTTCTCCTC--ATG-TGAAAGCGGGGTGGGGAACCCAAA  1132

seq1  TCGGGA-TCAGAC  1155
      |||| | ||||||
seq2  TCGGTACTCAGAC  1145

seq1: chr14_73398935_73399897
seq2: B6Ng01-235E17.g_67_1045 (reverse)

seq1  ATACTGCTGT--ATGA-TCAATAAACTAGAAACCCTTGGGCCAGGCCCAA  47
      ||||||||||   ||| |||||||||||  || ||||||| |||| ||||
seq2  ATACTGCTGTTATTGATTCAATAAACTAAGAAACCTTGGGGCAGGGCCAA  50

seq1  A--CATCTAGA-TA-CAGCCTGA-GGCCCCAGCTAGCCAGAAGAAGCC-G  91
      |   ||||||| || |||||||| ||||| ||||||| ||||||| || |
seq2  AACAATCTAGAGTACCAGCCTGAGGGCCCTAGCTAGCAAGAAGAAACCGG  100

seq1  TGGCCTGG-ACA--GGGAGGAGGTCTGAAGGGCC-AAAACTCGAGTGGAC  137
      |||||||| |||  || || |||||||||||||| |||||||||||||||
seq2  TGGCCTGGAACAAGGGAAGAAGGTCTGAAGGGCCAAAAACTCGAGTGGAC  150

seq1  AT-CAGCCTCAGGCATGAACTTCCTCT-AAGACACTGGAAAACAAACATG  185
      || |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATCCAGCCTCAGGCATGAACTTCCTCTAAAGACACTGGAAAACAAACATG  200

seq1  GAAAATTGGTTTGCAAGGTCCCGTGGATACTGAAGGGCCTTGAGCATGTG  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGTTTGCAAGGTCCCGTGGATACTGAAGGGCCTTGAGCATGTG  250

seq1  GCTCTGATAGGCCTTGATCTTCTCCCTTGTTCTCTCTGCCTTGCCAATAA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATAGGCCTTGATCTTCTCCCTTGTTCTCTCTGCCTTGCCAATAA  300

seq1  AAAAAAAAAAAAAAAAGAATTCTATTCCT-AAAGCTAGCCATCAAGGACC  334
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAGAATTCTATTCCTAAAAGCTAGCCATCAAGGACC  350

seq1  ATTCCCTTATTTAGCCATTTCTTCCTCCTGAGGCTGACTGCCAAGGTTCA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTTATTTAGCCATTTCTTCCTCCTGAGGCTGACTGCCAAGGTTCA  400

seq1  GCTCTCAAGGTATTGGAAATCCAGTAATGAAAAGCCCCCTTTTGACACAT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAAGGTATTGGAAATCCAGTAATGAAAAGCCCCCTTTTGACACAT  450

seq1  GTAGTTAATATGCCCAGTTACAATTAAACACCTCATCCTAAAACAGGGTT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTAATATGCCCAGTTACAATTAAACACCTCATCCTAAAACAGGGTT  500

seq1  TCCCCCTTTACCTTTATAAACCACCACTTTCCTATGGGCCATGTCTGTCT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTTACCTTTATAAACCACCACTTTCCTATGGGCCATGTCTGTCT  550

seq1  CCTCTCTAACCAGAGGCAGTCCTTTGTTCCCCAGAACAAATACCCCTTCC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTAACCAGAGGCAGTCCTTTGTTCCCCAGAACAAATACCCCTTCC  600

seq1  CCTCTCATTTGTCTCCTTCCCCTTCTCCTCCTCCTCTTTGTCTCTCATTC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATTTGTCTCCTTCCCCTTCTCCTCCTCCTCTTTGTCTCTCATTC  650

seq1  CCTGCCCTCTGTCCCTGTGGGACAGACAAATCTCCTTGGTGCTGAGAACT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTCTGTCCCTGTGGGACAGACAAATCTCCTTGGTGCTGAGAACT  700

seq1  TGGTCTTGGGGGGTTCCTGAGCCAATAACAATGTCTAAAAGACACACATG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTGGGGGGTTCCTGAGCCAATAACAATGTCTAAAAGACACACATG  750

seq1  CAAGGCCCTGGCTAGACCCTACACAAAGGGCCTTCTACCTTGATGGAACT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCCTGGCTAGACCCTACACAAAGGGCCTTCTACCTTGATGGAACT  800

seq1  GTTTGAGTGGCATCTACTTCTGCTCTGGGGTCTCTCTCAGACCACTTTCC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTGGCATCTACTTCTGCTCTGGGGTCTCTCTCAGACCACTTTCC  850

seq1  AGAATGTAAGAAAAAGAAAGGTATCTATCTCCTGCCTGGAATAGCCCCCC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTAAGAAAAAGAAAGGTATCTATCTCCTGCCTGGAATAGCCCCCC  900

seq1  CTTCCCACTGTCTCGGTCTGTTGGCTGCAAACTCCTGGGCTGTGTTTTAC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACTGTCTCGGTCTGTTGGCTGCAAACTCCTGGGCTGTGTTTTAC  950

seq1  TGAGAGACTCACCTTTGACCAGAGAATTC  963
      |||||||||||||||||||||||||||||
seq2  TGAGAGACTCACCTTTGACCAGAGAATTC  979