BAC Information

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BAC

Clone NameB6Ng01-235P05
Chromosome14 (Build37)
Map Location 95,570,019 - 95,701,138
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043356, LOC100043783, LOC677613
Downstream geneLOC100043784, LOC382931, 4921530L21Rik, Klhl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235P05.bB6Ng01-235P05.g
ACCGA047298GA047299
length861950
definitionB6Ng01-235P05.b B6Ng01-235P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,570,019 - 95,570,846)(95,700,521 - 95,701,138)
sequence
gaattcttcaagactgtaacaatgtattgcaaactctagcatataataaa
gattcggttataaactatttttaaaacaaaaatatagaagaaattgatgg
agaaaacgcaagacatatagcagggcatgaggattggctttttattgtca
gaacagaaaaataccctggcgatatttagttcacaatggcacttatgtac
aaaggaaatgtcaggagatattcagattttgtctgtttaagaactctgtt
gagctactgagttagtgtgtctaacctgcaatctacagctgccttcaacg
ttcctctggggctacagttaactcttttttgtttttaattttttattaga
tattttctttatttatatttcaaatgttattcccttccctagtttcctct
ccgaaaatcccctatcccctcccccctcgccttgttccccaaacaaccca
caacagcttcctggccctggcattctcctatactggggcatagaaccttc
gcaagaccaaggtcctctcttcccattgatgaccaactaggcctctgctg
catatgcagctagagccatgagtcccaccatgtgttttctttgactggtg
atttactccagggagctctggggtactggttagttctttttcttgttctc
tttctctctttctttctttctttctttctttctttctttctttctttctt
tctttctttctttctttctttctttctttctttctttctttctttctttc
ttcttttttttttttttttttttttggtttttcagacagggatatttttg
tatagccctggctgtcctggaactcacctttgtagaccaggctggcctcg
aactccgaaat

gaattcagaaggagtcctgaacacaagtaagagatagaatgaatgaaggt
ttgaaactatgaatctaaaagaggataagaagagttaagtgtgcatttgt
atgtatatgtgtgtgtctctgtgtgtttattattatagctctgtagtaca
atttgaggtcagatcttgtgatacctccaaaatttcttttattatttagg
attgtaataactaccctgaattttccatgcaaaattgaaaactgtacttt
gaagatctgtgaagaattatattagaattttgattgggcttatatcaaat
ctgtagataccctttagtaggatggcagttttactacagttatcctatct
atccaagagtatgagagatctgctatcctcttcaatttcttccttcaaag
aattgaaggttttatgaaacaagtcttttacttactttgcaagaaatatc
ctgagatatataatattatttgatggtattctgatgactgttttctctga
tttctttctcagttcacttgtcatttgtacattggaataatactgactct
ttggaaagttcacgttttatccagctcttttactgaatgtgtttatcagg
tttaaggattatttttgaggtcgggtatgtataatatcatatcattgtca
aaaagatactttgatttcatcctttcaattttgtatgcctttgacctcct
tcattttgtcttattgattaggtaagacctcagagactatactgagtagt
atgttaaagggaagaaattctcgttaatgttttctgagtttagtgggaat
tactctgagtttttcttcactagacctttgttcatgtttggccatgtgct
tgctgtgaagtacctttattatatttagctatgtcccttggtttccctaa
tatgtacaattttttttatcataaaggagtgcttaaaattttatcaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_95570019_95570846
seq2: B6Ng01-235P05.b_48_873

seq1  GAATTCTTCAAGACTGTAACAATGTATTGCAAACTCTAGCATATAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAGACTGTAACAATGTATTGCAAACTCTAGCATATAATAAA  50

seq1  GATTCGGTTATAAACTATTTTTAAAACAAAAATATAGAAGAAATTGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGGTTATAAACTATTTTTAAAACAAAAATATAGAAGAAATTGATGG  100

seq1  AGAAAACGCAAGACATATAGCAGGGCATGAGGATTGGCTTTTTATTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACGCAAGACATATAGCAGGGCATGAGGATTGGCTTTTTATTGTCA  150

seq1  GAACAGAAAAATACCCTGGCGATATTTAGTTCACAATGGCACTTATGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAAAATACCCTGGCGATATTTAGTTCACAATGGCACTTATGTAC  200

seq1  AAAGGAAATGTCAGGAGATATTCAGATTTTGTCTGTTTAAGAACTCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATGTCAGGAGATATTCAGATTTTGTCTGTTTAAGAACTCTGTT  250

seq1  GAGCTACTGAGTTAGTGTGTCTAACCTGCAATCTACAGCTGCCTTCAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACTGAGTTAGTGTGTCTAACCTGCAATCTACAGCTGCCTTCAACG  300

seq1  TTCCTCTGGGGCTACAGTTAACTCTTTTTTGTTTTTAATTTTTTATTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGGGGCTACAGTTAACTCTTTTTTGTTTTTAATTTTTTATTAGA  350

seq1  TATTTTCTTTATTTATATTTCAAATGTTATTCCCTTCCCTAGTTTCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTTATTTATATTTCAAATGTTATTCCCTTCCCTAGTTTCCTCT  400

seq1  CCGAAAATCCCCTATCCCCTCCCCCCTCGCCTTGTTCCCCAAACAACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAATCCCCTATCCCCTCCCCCCTCGCCTTGTTCCCCAAACAACCCA  450

seq1  CAACAGCTTCCTGGCCCTGGCATTCTCCTATACTGGGGCATAGAACCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTTCCTGGCCCTGGCATTCTCCTATACTGGGGCATAGAACCTTC  500

seq1  GCAAGACCAAGGTCCTCTCTTCCCATTGATGACCAACTAGGCCTCTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACCAAGGTCCTCTCTTCCCATTGATGACCAACTAGGCCTCTGCTG  550

seq1  CATATGCAGCTAGAGCCATGAGTCCCACCATGTGTTTTCTTTGACTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCAGCTAGAGCCATGAGTCCCACCATGTGTTTTCTTTGACTGGTG  600

seq1  ATTTACTCCAGGGAGCTCTGGGGTACTGGTTAGTTCTTTTTCTTGTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTCCAGGGAGCTCTGGGGTACTGGTTAGTTCTTTTTCTTGTTCTC  650

seq1  TTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  700

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  750

seq1  TTCTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCAAGACAGGGATATTTT  800
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTC-TTTTTTTTTTTTTTTTTTTTTTGGTTTTTC-AGACAGGGATATTTT  798

seq1  TGTATAGCCCTGGCTGTCCTGGAACTCA  828
      ||||||||||||||||||||||||||||
seq2  TGTATAGCCCTGGCTGTCCTGGAACTCA  826


seq1: chr14_95700521_95701138
seq2: B6Ng01-235P05.g_71_688 (reverse)

seq1  TCAAAAATAATCCTTAAACCTGATAAACACATTCAGTAAAAGAGCTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATAATCCTTAAACCTGATAAACACATTCAGTAAAAGAGCTGGAT  50

seq1  AAAACGTGAACTTTCCAAAGAGTCAGTATTATTCCAATGTACAAATGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTGAACTTTCCAAAGAGTCAGTATTATTCCAATGTACAAATGACA  100

seq1  AGTGAACTGAGAAAGAAATCAGAGAAAACAGTCATCAGAATACCATCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTGAGAAAGAAATCAGAGAAAACAGTCATCAGAATACCATCAAA  150

seq1  TAATATTATATATCTCAGGATATTTCTTGCAAAGTAAGTAAAAGACTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTATATATCTCAGGATATTTCTTGCAAAGTAAGTAAAAGACTTGT  200

seq1  TTCATAAAACCTTCAATTCTTTGAAGGAAGAAATTGAAGAGGATAGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAACCTTCAATTCTTTGAAGGAAGAAATTGAAGAGGATAGCAGA  250

seq1  TCTCTCATACTCTTGGATAGATAGGATAACTGTAGTAAAACTGCCATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATACTCTTGGATAGATAGGATAACTGTAGTAAAACTGCCATCCT  300

seq1  ACTAAAGGGTATCTACAGATTTGATATAAGCCCAATCAAAATTCTAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGGGTATCTACAGATTTGATATAAGCCCAATCAAAATTCTAATAT  350

seq1  AATTCTTCACAGATCTTCAAAGTACAGTTTTCAATTTTGCATGGAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCACAGATCTTCAAAGTACAGTTTTCAATTTTGCATGGAAAATT  400

seq1  CAGGGTAGTTATTACAATCCTAAATAATAAAAGAAATTTTGGAGGTATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGTTATTACAATCCTAAATAATAAAAGAAATTTTGGAGGTATCA  450

seq1  CAAGATCTGACCTCAAATTGTACTACAGAGCTATAATAATAAACACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTGACCTCAAATTGTACTACAGAGCTATAATAATAAACACACAG  500

seq1  AGACACACACATATACATACAAATGCACACTTAACTCTTCTTATCCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACACATATACATACAAATGCACACTTAACTCTTCTTATCCTCTT  550

seq1  TTAGATTCATAGTTTCAAACCTTCATTCATTCTATCTCTTACTTGTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTCATAGTTTCAAACCTTCATTCATTCTATCTCTTACTTGTGTTC  600

seq1  AGGACTCCTTCTGAATTC  618
      ||||||||||||||||||
seq2  AGGACTCCTTCTGAATTC  618


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