BAC Information

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BAC

Clone NameB6Ng01-236D05
Chromosome14 (Build37)
Map Location 26,936,473 - 27,131,547
singlet/doubletdoublet
Overlap geneLOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527
Upstream geneZmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213
Downstream geneLOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236D05.bB6Ng01-236D05.g
ACCGA047478GA047479
length3441,064
definitionB6Ng01-236D05.b B6Ng01-236D05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,131,204 - 27,131,547)(26,936,473 - 26,937,528)
sequence
tcaaataacaaaatacaagtagagtcttcccctacataagcgaagcctag
aagcctactcctgtgtcaacttccttggtcttcctccattgtcttctgta
caccagttgagctgcctcagctccaggcaacagagctagagtctggctca
caagatgggaccacagtctggcacacgcctgcactcagaagtttagagaa
ggaggaaaaagtctgggctagcctaggctataaagggaaacactgggcca
aaaggaagatggagagaaaaataattttttttaatttgttttttgttgtt
gtgtgggaactaaaagggggtataggggaaagaaggggggaggg
gaattcatacacgtaggcacatacacacaaatgtatgtgtatacaagcat
tgtaggcacacacacacaaatgtatgtgtatacaagcattgtaggcacac
acacacaaagacatcatctagaccagattggctattgcatccttgaacac
tcagtagctgtgacctgtattagactgagctggttcacattctaccatga
ggggaaagggtcttcaggggccttgctgcttcttgaggatgtagacagtc
agtgcctgcttgcagagggagagatgctttccacaacggcatagtcactg
gtaagttgaaaaaacaggccaagctcagcatccgttctctgtttcctgag
tgtggacacagtatggccagctacatgcagcttgtcccaccgcccctttc
ctgccatgatggtctgcacttcctgggactggaaggcaaagttaccctgt
ccttaaattgctcttgtcagatattctgtctcagcagcaagacaagcaac
tggggtgaatagcatcacactatatacatgcatggaaaagacacagggaa
acccatcgtttatgtataattaatacgtaccaataaaaagttttacattg
ccgggcgtggtggcgcacgcctttaatcccagcactcgggaggcagaggc
aggcggatttctgagttcgaggccggcctggtctacagagtgagttccag
gacagccagagctatacagagaaaccctgtctcaacaaacaaacaaaaaa
gttttacattcataaagttaataataaaagaatgaaattgggcagtggtg
gcacacacctttaatcccagaacttgggaggcagaggcaggcagattctg
agttcgaggtgagccttgatcttacagagtgagtctcagggacagccaag
actacaaccctgtctcgaaaaaaggatgatatttaggaaggtggcgagaa
atggggaagatggaattaaggttaagccaaatgtatgagaaaggctatag
gatatgaagtaaaattttaaaggtctggtaggtcaagggcatgtaagtaa
aaggaaacaataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_27131204_27131547
seq2: B6Ng01-236D05.b_52_395 (reverse)

seq1  CCCTCCCCCCTTCTTTCCCCTATACCCCCTTTTAGTTCCCACACAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCCTTCTTTCCCCTATACCCCCTTTTAGTTCCCACACAACAAC  50

seq1  AAAAAACAAATTAAAAAAAATTATTTTTCTCTCCATCTTCCTTTTGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAATTAAAAAAAATTATTTTTCTCTCCATCTTCCTTTTGGCCC  100

seq1  AGTGTTTCCCTTTATAGCCTAGGCTAGCCCAGACTTTTTCCTCCTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCCCTTTATAGCCTAGGCTAGCCCAGACTTTTTCCTCCTTCTCT  150

seq1  AAACTTCTGAGTGCAGGCGTGTGCCAGACTGTGGTCCCATCTTGTGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTGAGTGCAGGCGTGTGCCAGACTGTGGTCCCATCTTGTGAGCC  200

seq1  AGACTCTAGCTCTGTTGCCTGGAGCTGAGGCAGCTCAACTGGTGTACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTAGCTCTGTTGCCTGGAGCTGAGGCAGCTCAACTGGTGTACAGA  250

seq1  AGACAATGGAGGAAGACCAAGGAAGTTGACACAGGAGTAGGCTTCTAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGGAGGAAGACCAAGGAAGTTGACACAGGAGTAGGCTTCTAGGC  300

seq1  TTCGCTTATGTAGGGGAAGACTCTACTTGTATTTTGTTATTTGA  344
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTTATGTAGGGGAAGACTCTACTTGTATTTTGTTATTTGA  344

seq1: chr14_26936473_26937528
seq2: B6Ng01-236D05.g_66_1129

seq1  GAATTCATACACGTAGGCACATACACACAAATGTATGTGTATACAAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACACGTAGGCACATACACACAAATGTATGTGTATACAAGCAT  50

seq1  TGTAGGCACACACACACAAATGTATGTGTATACAAGCATTGTAGGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCACACACACACAAATGTATGTGTATACAAGCATTGTAGGCACAC  100

seq1  ACACACAAAGACATCATCTAGACCAGATTGGCTATTGCATCCTTGAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAAGACATCATCTAGACCAGATTGGCTATTGCATCCTTGAACAC  150

seq1  TCAGTAGCTGTGACCTGTATTAGACTGAGCTGGTTCACATTCTACCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGCTGTGACCTGTATTAGACTGAGCTGGTTCACATTCTACCATGA  200

seq1  GGGGAAAGGGTCTTCAGGGGCCTTGCTGCTTCTTGAGGATGTAGACAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGGGTCTTCAGGGGCCTTGCTGCTTCTTGAGGATGTAGACAGTC  250

seq1  AGTGCCTGCTTGCAGAGGGAGAGATGCTTTCCACAACGGCATAGTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGCTTGCAGAGGGAGAGATGCTTTCCACAACGGCATAGTCACTG  300

seq1  GTAAGTTGAAAAAACAGGCCAAGCTCAGCATCCGTTCTCTGTTTCCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTGAAAAAACAGGCCAAGCTCAGCATCCGTTCTCTGTTTCCTGAG  350

seq1  TGTGGACACAGTATGGCCAGCTACATGCAGCTTGTCCCACCGCCCCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACACAGTATGGCCAGCTACATGCAGCTTGTCCCACCGCCCCTTTC  400

seq1  CTGCCATGATGGTCTGCACTTCCTGGGACTGGAAGGCAAAGTTACCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGATGGTCTGCACTTCCTGGGACTGGAAGGCAAAGTTACCCTGT  450

seq1  CCTTAAATTGCTCTTGTCAGATATTCTGTCTCAGCAGCAAGACAAGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATTGCTCTTGTCAGATATTCTGTCTCAGCAGCAAGACAAGCAAC  500

seq1  TGGGGTGAATAGCATCACACTATATACATGCATGGAAAAGACACAGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGAATAGCATCACACTATATACATGCATGGAAAAGACACAGGGAA  550

seq1  ACCCATCGTTTATGTATAATTAATACGTACCAATAAAAAGTTTTACATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCGTTTATGTATAATTAATACGTACCAATAAAAAGTTTTACATTG  600

seq1  CCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGC  650

seq1  AGGCGGATTTCTGAGTTCGAGGCCGGCCTGGTCTACAGAGTGAGTTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGATTTCTGAGTTCGAGGCCGGCCTGGTCTACAGAGTGAGTTCCAG  700

seq1  GACAGCCAGAGCTATACAGAGAAACCCTGTCTCAAACAAACAAACAAAAA  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACAGCCAGAGCTATACAGAGAAACCCTGTCTC-AACAAACAAACAAAAA  749

seq1  AGTTTTACATTCATAAAGTTAATAATAAAAGAATGAAATTGGGCAGTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACATTCATAAAGTTAATAATAAAAGAATGAAATTGGGCAGTGGT  799

seq1  GGCACACACCTTTAATCCCAGAACTTGGGAGGCAGAGGCAGGCAGATTTC  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGCACACACCTTTAATCCCAGAACTTGGGAGGCAGAGGCAGGCAGA-TTC  848

seq1  TGAGTTCGAGGTGAGCC-TGATC-TACAGAGTGAGT-TCCAGGACAGCCA  897
      ||||||||||||||||| ||||| |||||||||||| ||  |||||||||
seq2  TGAGTTCGAGGTGAGCCTTGATCTTACAGAGTGAGTCTCAGGGACAGCCA  898

seq1  AGACTACAACCCTGTCTCGAAAAAAGGATGATATTAAGGAAGG-GGCGAA  946
      ||||||||||||||||||||||||||||||||||| ||||||| |||| |
seq2  AGACTACAACCCTGTCTCGAAAAAAGGATGATATTTAGGAAGGTGGCG-A  947

seq1  GAAATGGGGAAGAT-GAAATAAGGTTAAG-CAAAGGTATGAGAAAGGCTA  994
      |||||||||||||| ||| |||||||||| |||| |||||||||||||||
seq2  GAAATGGGGAAGATGGAATTAAGGTTAAGCCAAATGTATGAGAAAGGCTA  997

seq1  TA-GATATGAAGTAAAATTTTAAA-GTCT-GTAAGT-AAAGGCATGTAAG  1040
      || ||||||||||||||||||||| |||| ||| || || ||||||||||
seq2  TAGGATATGAAGTAAAATTTTAAAGGTCTGGTAGGTCAAGGGCATGTAAG  1047

seq1  TAAAAGG-AACAATAAG  1056
      ||||||| |||||||||
seq2  TAAAAGGAAACAATAAG  1064