BAC Information

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BAC

Clone NameB6Ng01-236G18
Chromosome14 (Build37)
Map Location 10,083,568 - 10,234,363
singlet/doubletdoublet
Overlap genenone
Upstream geneAcox2, BC055107, Oit1, LOC667005, 4930452B06Rik, LOC100041948
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236G18.bB6Ng01-236G18.g
ACCGA047643GA047644
length1,0851,074
definitionB6Ng01-236G18.b B6Ng01-236G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,083,568 - 10,084,656)(10,233,293 - 10,234,363)
sequence
gaattcctctacatgaaaactagaattaattcatgcttgataatttccta
cttctctcttatgttttacatggggcccttacaataaatacacagtacaa
tactgttctgatccatgttaatggctttctctttccctctaatcttcaag
gtgtatatattttggcacctaactagttcatttcagtttggtagacacca
aaggatatattgaaacaaaagcaccttagctattttttttcctgttgctg
gcataaagtgccatgtcaaaagcaatgtacagaaggaagagtttatttgg
gtctatgcttccagatggataagactgaacgatagaaatggtatgtgact
atgaaatgtcaaattccagtgtcacacttgccccagcaaagccacaactc
ttatatctacttaaacagagccaccaactcaagaccaagtattccaacat
ctgagcccatgaggaatgccctccttctaaacatcacaaaaaatacagaa
acagcactaagcaacatcatggtgctggggtgtttgagaccaatagataa
catcctcctagatttatgctatcagacacatatggcagaggatgtgtgaa
ggcaatctagcatagacattgcattaccaacagcacttagactaaatgag
tcagtctgcccatttgttggtagttccatacagattgtctgagtggagtc
cttctgtccctctccatgtaaaggtgaccaaccccaccttctccatgtcc
tcactgaacatgtttgttttggcattcatgatgcttccaggtaaagataa
gctgtagctctggatcactcacagcttcaggatggaacgtctctgtggtt
gggacctggcttcttagttgtttttcgagttcctagctgagtttgcagta
ggaggcacatcattagaactcagaatattgttttgtgattctgaaagtat
tttcagtatcatcttactcctgtagttggtagaaaactcactatcattgc
acagtaccttccttatgaccaaaacgtacatggtaataagaggattgctt
gctgcctatgacacccagtgtctagtacacacagt
gaattccacccacctgcccaccaggtccttcaatgttcgctttctgtgaa
ccaaatttccatttcagccagtgccagaataggcttctaggacagtgaga
ttcctggtctggggaaatcagaggcaaatacacacgcccattctgtagat
tcctgctttggagataaatattcctgttcttaaaacacagagaggaatca
tgtttctaaatatttattctcttgggcactattttgaaattccaaaatta
aaaaaaaaaaccaaacaaacaaaccaaaaaacaaacaaacaaaaactcca
tgcaactgataaatatagagaactcatgtgttctttttgcagatatactt
atcttaaaattttatttcttgtccattccattaatatttacttttataag
ctattggagtgttctctcctctgtgtttagatatcctttagtctatgctt
tttcaaagtaaagaggctttattacataccatgtcattcaggacaggcaa
ctttgctgggttgtttttacttattcttcagtgtgtgatttcaaggcctt
ttggtaatttacacctatttaataaagatcttaggaaagcttttcttgca
ttttatcttcttgtgatttgtttattttctaaaaccctgaaccaaagata
tgactggagtccttatctgctcagggatgttatactccactatcatgcat
tcctgtctgttttcatcatgggggcatagcattgctgtaacaatgcggtt
cccactacagctctcaggctggcagccttctgtctaagggccaaggtgac
ttcatatcagattagtacttcctgtttatgtgtctcctggcaggatgaca
aggcagcatcataaaatgtaagagtttcttaagttgtggaggatggaggg
aagggaagattagggagttcaggaatataaaactatcattatccatagac
attcggagcccagttttctgaaactgaattcttgttcaatcccaattatg
actgtctcaatttagaatttcggcttttgacctcagatatccctactaaa
ggatagaatgaagaattaggttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_10083568_10084656
seq2: B6Ng01-236G18.b_45_1129

seq1  GAATTCCTCTACATGAAAACTAGAATTAATTCATGCTTGATAATTTCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTACATGAAAACTAGAATTAATTCATGCTTGATAATTTCCTA  50

seq1  CTTCTCTCTTATGTTTTACATGGGGCCCTTACAATAAATACACAGTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCTTATGTTTTACATGGGGCCCTTACAATAAATACACAGTACAA  100

seq1  TACTGTTCTGATCCATGTTAATGGCTTTCTCTTTCCCTCTAATCTTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTCTGATCCATGTTAATGGCTTTCTCTTTCCCTCTAATCTTCAAG  150

seq1  GTGTATATATTTTGGCACCTAACTAGTTCATTTCAGTTTGGTAGACACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATATTTTGGCACCTAACTAGTTCATTTCAGTTTGGTAGACACCA  200

seq1  AAGGATATATTGAAACAAAAGCACCTTAGCTATTTTTTTTCCTGTTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATATTGAAACAAAAGCACCTTAGCTATTTTTTTTCCTGTTGCTG  250

seq1  GCATAAAGTGCCATGTCAAAAGCAATGTACAGAAGGAAGAGTTTATTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAGTGCCATGTCAAAAGCAATGTACAGAAGGAAGAGTTTATTTGG  300

seq1  GTCTATGCTTCCAGATGGATAAGACTGAACGATAGAAATGGTATGTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGCTTCCAGATGGATAAGACTGAACGATAGAAATGGTATGTGACT  350

seq1  ATGAAATGTCAAATTCCAGTGTCACACTTGCCCCAGCAAAGCCACAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGTCAAATTCCAGTGTCACACTTGCCCCAGCAAAGCCACAACTC  400

seq1  TTATATCTACTTAAACAGAGCCACCAACTCAAGACCAAGTATTCCAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTACTTAAACAGAGCCACCAACTCAAGACCAAGTATTCCAACAT  450

seq1  CTGAGCCCATGAGGAATGCCCTCCTTCTAAACATCACAAAAAATACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCATGAGGAATGCCCTCCTTCTAAACATCACAAAAAATACAGAA  500

seq1  ACAGCACTAAGCAACATCATGGTGCTGGGGTGTTTGAGACCAATAGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTAAGCAACATCATGGTGCTGGGGTGTTTGAGACCAATAGATAA  550

seq1  CATCCTCCTAGATTTATGCTATCAGACACATATGGCAGAGGATGTGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCTAGATTTATGCTATCAGACACATATGGCAGAGGATGTGTGAA  600

seq1  GGCAATCTAGCATAGACATTGCATTACCAACAGCACTTAGACTAAATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCTAGCATAGACATTGCATTACCAACAGCACTTAGACTAAATGAG  650

seq1  TCAGTCTGCCCATTTGTTGGTAGTTCCATACAGATTGTCTGAGTGGAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTGCCCATTTGTTGGTAGTTCCATACAGATTGTCTGAGTGGAGTC  700

seq1  CTTCTGTCCCTCTCCATGTAAAGGTGACCAACCCCACCTTCTCCATGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCCCTCTCCATGTAAAGGTGACCAACCCCACCTTCTCCATGTCC  750

seq1  TCACTGAACATGTTTGTTTTGGCATTCATGATGCTTCCAGGTAAAGATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAACATGTTTGTTTTGGCATTCATGATGCTTCCAGGTAAAGATAA  800

seq1  GCTGTAGCTCTGGATCACTCACAGCTTCAGGATGGAACGTCTCTGTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGCTCTGGATCACTCACAGCTTCAGGATGGAACGTCTCTGTGGTT  850

seq1  GGGACCTGGCTTCTTAGTTGTTTTTCGAGTTCCTAGCTGAGTTTGCAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTGGCTTCTTAGTTGTTTTTCGAGTTCCTAGCTGAGTTTGCAGTA  900

seq1  GGAGGCACATCATTAGAACTCAGGAATATTTGTTTTGTGATTCTGAAAGT  950
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  GGAGGCACATCATTAGAACTCA-GAATA-TTGTTTTGTGATTCTGAAAGT  948

seq1  A-TTTCAGTATCATCTTACTCCTGTAGTTGGTAGAAAAACTCACTATCAT  999
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTTCAGTATCATCTTACTCCTGTAGTTGGTAG-AAAACTCACTATCAT  997

seq1  TGCACAGTACCTTCCTTATGACCCAAAACGTACATGGAAATAAGAGGATT  1049
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TGCACAGTACCTTCCTTATGA-CCAAAACGTACATGGTAATAAGAGGATT  1046

seq1  GGCTTGCTGCCTATGACACCCAGTGTCTAGTACACACAGT  1089
       |||||||||||||||||||||||||||||||||||||||
seq2  -GCTTGCTGCCTATGACACCCAGTGTCTAGTACACACAGT  1085

seq1: chr14_10233293_10234363
seq2: B6Ng01-236G18.g_66_1139 (reverse)

seq1  AGAACCTTCTTCTTCTTTTCTTCCTTTAGTGGGGCTATCTGAGGTCAAAA  50
      |||||||  |||||| ||   ||||||||| ||| |||||||||||||||
seq2  AGAACCTAATTCTTCATTCTATCCTTTAGTAGGGATATCTGAGGTCAAAA  50

seq1  GCAGAAA-TCTGAATTGAGACAGTCATAGTCTGGGGAATGGACAAGAA-T  98
      || |||| ||| ||||||||||||||||   | |||| || ||||||| |
seq2  GCCGAAATTCTAAATTGAGACAGTCATA--ATTGGGATTGAACAAGAATT  98

seq1  CAGTTTTCAGAAACCT-GGCTCC-AATGTCTTTGTATAATTGTTAGTTTT  146
      ||| ||||||||| || |||||| ||||||| || |||| || |||||||
seq2  CAG-TTTCAGAAAACTGGGCTCCGAATGTCTATGGATAA-TGATAGTTTT  146

seq1  AT-CTCCTG-ACTCCCTAATCTTCCCTTCCCTCCATCCTCCACAACTT-A  193
      ||  ||||| |||||||||||||||||||||||||||||||||||||| |
seq2  ATATTCCTGAACTCCCTAATCTTCCCTTCCCTCCATCCTCCACAACTTAA  196

seq1  GGAACTCTTACATTTTATGATGCTGCCTTGTCATCCTGCCAGGAGACACA  243
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTTACATTTTATGATGCTGCCTTGTCATCCTGCCAGGAGACACA  246

seq1  TAAACAGGAAGTACTAATCTGATATGAAGTCACCTTGGCCCTTAGACAGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGGAAGTACTAATCTGATATGAAGTCACCTTGGCCCTTAGACAGA  296

seq1  AGGCTGCCAGCCTGAGAGCTGTAGTGGGAACCGCATTGTTACAGCAATGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCCAGCCTGAGAGCTGTAGTGGGAACCGCATTGTTACAGCAATGC  346

seq1  TATGCCCCCATGATGAAAACAGACAGGAATGCATGATAGTGGAGTATAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCCCATGATGAAAACAGACAGGAATGCATGATAGTGGAGTATAAC  396

seq1  ATCCCTGAGCAGATAAGGACTCCAGTCATATCTTTGGTTCAGGGTTTTAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGAGCAGATAAGGACTCCAGTCATATCTTTGGTTCAGGGTTTTAG  446

seq1  AAAATAAACAAATCACAAGAAGATAAAATGCAAGAAAAGCTTTCCTAAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACAAATCACAAGAAGATAAAATGCAAGAAAAGCTTTCCTAAGA  496

seq1  TCTTTATTAAATAGGTGTAAATTACCAAAAGGCCTTGAAATCACACACTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTAAATAGGTGTAAATTACCAAAAGGCCTTGAAATCACACACTG  546

seq1  AAGAATAAGTAAAAACAACCCAGCAAAGTTGCCTGTCCTGAATGACATGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAGTAAAAACAACCCAGCAAAGTTGCCTGTCCTGAATGACATGG  596

seq1  TATGTAATAAAGCCTCTTTACTTTGAAAAAGCATAGACTAAAGGATATCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATAAAGCCTCTTTACTTTGAAAAAGCATAGACTAAAGGATATCT  646

seq1  AAACACAGAGGAGAGAACACTCCAATAGCTTATAAAAGTAAATATTAATG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGAGGAGAGAACACTCCAATAGCTTATAAAAGTAAATATTAATG  696

seq1  GAATGGACAAGAAATAAAATTTTAAGATAAGTATATCTGCAAAAAGAACA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGACAAGAAATAAAATTTTAAGATAAGTATATCTGCAAAAAGAACA  746

seq1  CATGAGTTCTCTATATTTATCAGTTGCATGGAGTTTTTGTTTGTTTGTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTCTCTATATTTATCAGTTGCATGGAGTTTTTGTTTGTTTGTTT  796

seq1  TTTGGTTTGTTTGTTTGGTTTTTTTTTTTAATTTTGGAATTTCAAAATAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTGTTTGTTTGGTTTTTTTTTTTAATTTTGGAATTTCAAAATAG  846

seq1  TGCCCAAGAGAATAAATATTTAGAAACATGATTCCTCTCTGTGTTTTAAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGAGAATAAATATTTAGAAACATGATTCCTCTCTGTGTTTTAAG  896

seq1  AACAGGAATATTTATCTCCAAAGCAGGAATCTACAGAATGGGCGTGTGTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAATATTTATCTCCAAAGCAGGAATCTACAGAATGGGCGTGTGTA  946

seq1  TTTGCCTCTGATTTCCCCAGACCAGGAATCTCACTGTCCTAGAAGCCTAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCTGATTTCCCCAGACCAGGAATCTCACTGTCCTAGAAGCCTAT  996

seq1  TCTGGCACTGGCTGAAATGGAAATTTGGTTCACAGAAAGCGAACATTGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCACTGGCTGAAATGGAAATTTGGTTCACAGAAAGCGAACATTGAA  1046

seq1  GGACCTGGTGGGCAGGTGGGTGGAATTC  1071
      ||||||||||||||||||||||||||||
seq2  GGACCTGGTGGGCAGGTGGGTGGAATTC  1074