BAC Information

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BAC

Clone NameB6Ng01-236J06
Chromosome14 (Build37)
Map Location 110,106,038 - 110,241,071
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk1, LOC640892
Downstream geneSlitrk6, EG668772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236J06.bB6Ng01-236J06.g
ACCGA047762GA047763
length1,1341,063
definitionB6Ng01-236J06.b B6Ng01-236J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,106,038 - 110,107,188)(110,240,057 - 110,241,071)
sequence
gaattcatgctatcctttactttaagcttggtccccactgctaccattaa
taatgctagactgtcttgtgcgtgcaatcagaggagaaagtaatcatttg
gagtagataggccttagagataaaatactctttaccctataaagatacat
ccactactacgaagtgttatggatgttttgggaatatccaaaacctttct
tagtgatccacatggtgactataccattataaatgtcaaaaaaaaaaaaa
aaaaaaaaaaaacaaacaaaaaaacaaaaaaaccctttggctacagagat
caaaagctcaagaataaaacctaacagtattatcctgcaaggtgtacttg
atttgaaactcacatataataacctttccttatacctgtagattagttta
tgttacatatcttagcagagcaacagatagaaattccaatcagatattag
taagttcccaaggcccaggggataagttaatacacggtgaacatgcctag
atggcatgtttatgtcatgtcacttcccttactcctaaacattatctcag
acacaccagaagagggcttcagatcccattacagatggttgtgagccacc
atgtggttgcttaaaactgaactcaggacctttgggagagcaggtagtgg
tcttaactgctagtctatagctccagccccaagaatgatctcaaagaagg
gacaaatatatgagagcaagaggctgtggccacagaaaggctggttaacg
tacggacttcacagtggtatgaaagcagaaatagtatctgtacaagttca
attcatacaaaactcagcccatacatgagcagcgtcttacaaagtcctgg
ctgagaagctattagcaatcattgacttctgagagaaagaagtgatttta
ttttatttttttatttttttccatatttttttatgggtatttattcaata
cattccaatgctatcccaaagttccccacaggctcccccacccattccct
cccaccccactcccactctggccctgtcatcactgtaacgaggcatataa
agtttgcacgacatgggcctctcttcaactgatgcgactaagcattcttc
tgattccaattgcagctgagaaccgagctcaggg
gaattcaagcaggtcaggaagcaggagctgatacagtggccgtggaggaa
tgttccttactggcttgcctccccttgctcaacctgctctcttatagaac
taagactatcagcccagagatggcaccacccacaaggggccttttcccct
tgatcactaattgagaaaatgccttacagctggatctcatggagacattt
cctcaactgaagctcctttctctgtgataactccagctgtgtcaagtgga
cacaaaactagccagtacactgttcctactcttgggcactttcccttctg
ttggtttatccagaataaatttaatgggatagtatttgttttattatatt
atattttattttgttatgttttatttttaacctttttgaaatatgttcct
tcaatgtttctggacaggggtaggtccagatgagaggggaggtggggaag
aacttggtgcaatagaaggaggtgaaagcataattgggaggtatttggaa
agaaatggatctatttttaataaaataaaactttagaaaatattttattt
atccttgtttctgaaattatttacaactatttattcaataaaatgaaaat
tgtccttaataattgggatttgagggagagatcacaaagggtatataggt
tgttctagtgggacaaataaaaagggaaaatttgtaattattttatcatc
tcaaaataaaaacgaaatatttttaatatatggcaaaacgaagtataaga
tgatgatgccaggcttcttttatttttataatgaggcagctaaaaacaaa
tcatctgttcagtttaaacacactacacagggcagggaaatactgaaaga
tgaatgtcatcgaggccagagggggtaaaaattgttgattctgaccaaag
caattagctgcgcatttgtgacgaatttgcccaaacacttgagacacttt
catctttcacagcaccttgagagttctgacactttcatcttgcattgcag
tgatcactgccattttgatctgtgcaggtcatttcattaaacacaattgc
ctttgaaagtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_110106038_110107188
seq2: B6Ng01-236J06.b_40_1173

seq1  GAATTCATGCTATCCTTTACTTTAAGCTTGGTCCCCACTGCTACCATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTATCCTTTACTTTAAGCTTGGTCCCCACTGCTACCATTAA  50

seq1  TAATGCTAGACTGTCTTGTGCGTGCAATCAGAGGAGAAAGTAATCATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTAGACTGTCTTGTGCGTGCAATCAGAGGAGAAAGTAATCATTTG  100

seq1  GAGTAGATAGGCCTTAGAGATAAAATACTCTTTACCCTATAAAGATACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGATAGGCCTTAGAGATAAAATACTCTTTACCCTATAAAGATACAT  150

seq1  CCACTACTACGAAGTGTTATGGATGTTTTGGGAATATCCAAAACCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACTACGAAGTGTTATGGATGTTTTGGGAATATCCAAAACCTTTCT  200

seq1  TAGTGATCCACATGGTGACTATACCATTATAAATGTCAAAAAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATCCACATGGTGACTATACCATTATAAATGTCAAAAAAAAAAAAA  250

seq1  AAAAAAAAAAAACAAACAAAAAAACAAAAAAACCCTTTGGCTACAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACAAACAAAAAAACAAAAAAACCCTTTGGCTACAGAGAT  300

seq1  CAAAAGCTCAAGAATAAAACCTAACAGTATTATCCTGCAAGGTGTACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTCAAGAATAAAACCTAACAGTATTATCCTGCAAGGTGTACTTG  350

seq1  ATTTGAAACTCACATATAATAACCTTTCCTTATACCTGTAGATTAGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAACTCACATATAATAACCTTTCCTTATACCTGTAGATTAGTTTA  400

seq1  TGTTACATATCTTAGCAGAGCAACAGATAGAAATTCCAATCAGATATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATATCTTAGCAGAGCAACAGATAGAAATTCCAATCAGATATTAG  450

seq1  TAAGTTCCCAAGGCCCAGGGGATAAGTTAATACACGGTGAACATGCCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCCCAAGGCCCAGGGGATAAGTTAATACACGGTGAACATGCCTAG  500

seq1  ATGGCATGTTTATGTCATGTCACTTCCCTTACTCCTAAACATTATCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGTTTATGTCATGTCACTTCCCTTACTCCTAAACATTATCTCAG  550

seq1  ACACACCAGAAGAGGGCTTCAGATCCCATTACAGATGGTTGTGAGCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAGAAGAGGGCTTCAGATCCCATTACAGATGGTTGTGAGCCACC  600

seq1  ATGTGGTTGCTTAAAACTGAACTCAGGACCTTTGGGAGAGCAGGTAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTGCTTAAAACTGAACTCAGGACCTTTGGGAGAGCAGGTAGTGG  650

seq1  TCTTAACTGCTAGTCTATAGCTCCAGCCCCAAGAATGATCTCAAAGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTGCTAGTCTATAGCTCCAGCCCCAAGAATGATCTCAAAGAAGG  700

seq1  GACAAATATATGAGAGCAAGAGGCTGTGGCCACAGAAAGGCTGGTTAACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATATATGAGAGCAAGAGGCTGTGGCCACAGAAAGGCTGGTTAACG  750

seq1  TACGGACTTCACAGTGGTATGAAAGCAGAAATAGTATCTGTACAAGTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGACTTCACAGTGGTATGAAAGCAGAAATAGTATCTGTACAAGTTCA  800

seq1  ATTCATACAAAACTCAGCCCATACATGAGCAGCGTCTTACAAAGTCCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACAAAACTCAGCCCATACATGAGCAGCGTCTTACAAAGTCCTGG  850

seq1  CTGAGAAGCTATTAGCAATCATTGACTTCTGAGAGAAAGAAGGTGATTTT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGAGAAGCTATTAGCAATCATTGACTTCTGAGAGAAAGAA-GTGATTTT  899

seq1  ATTTTATTTTTTTATTTTTTTCCATATTTTTTTATTGGGTATTTATTTCA  950
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  ATTTTATTTTTTTATTTTTTTCCATATTTTTTTA-TGGGTATTTA-TTCA  947

seq1  ATTACATTTCCAATGCTATCCCAAAAGTTCCCCACAGGCTCCCCCACCCA  1000
      | |||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  A-TACA-TTCCAATGCTATCCC-AAAGTTCCCCACAGGCTCCCCCACCCA  994

seq1  TTCCCCTTCCCA-CCCACTCCCACTTCTTGGCCCTGTCATTCACCTGTAC  1049
      |||||  ||||| ||||||||||||   ||||||||||| ||| ||||| 
seq2  TTCCC--TCCCACCCCACTCCCACT--CTGGCCCTGTCA-TCA-CTGTAA  1038

seq1  CGAGGCATATAAAGTTTGCACGACCAATGGGCCTCTCTTTCCACTGATGG  1099
      ||||||||||||||||||||||||  ||||||||||| ||| ||||||| 
seq2  CGAGGCATATAAAGTTTGCACGAC--ATGGGCCTCTC-TTCAACTGATG-  1084

seq1  CCGACTAGGCCATCTTCTGATT-CATATGCAGCTAGAGACACGAGCTCCA  1148
       |||||| ||  |||||||||| ||  ||||||| ||||  |||||| ||
seq2  -CGACTAAGCATTCTTCTGATTCCAATTGCAGCT-GAGAACCGAGCT-CA  1131

seq1  GGG  1151
      |||
seq2  GGG  1134

seq1: chr14_110240057_110241071
seq2: B6Ng01-236J06.g_96_1127 (reverse)

seq1  TTTAC-TTCAAA-GCAATTGTGTTTAATGAAAATGA-CTG--CAGATTCA  45
      ||||| |||||| |||||||||||||||| |||||| |||  |||||  |
seq2  TTTACTTTCAAAGGCAATTGTGTTTAATG-AAATGACCTGCACAGATCAA  49

seq1  AATGGCAGTGATCACTGCATTG-AAGATGAAA--GTCAG-ACTCTCAA-G  90
      ||||||||||||||||||| || |||||||||  ||||| |||||||| |
seq2  AATGGCAGTGATCACTGCAATGCAAGATGAAAGTGTCAGAACTCTCAAGG  99

seq1  TGCTGTG-AAGATGAAAGTGTCTCAAGTGTTTGGGCAAATTCGTCAC-AA  138
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCTGTGAAAGATGAAAGTGTCTCAAGTGTTTGGGCAAATTCGTCACAAA  149

seq1  TGCGCAGCTAATTGCTTTGGTCAGAATCA--CATTTTTA-CCCCTCTGGC  185
      |||||||||||||||||||||||||||||   ||||||| ||||||||||
seq2  TGCGCAGCTAATTGCTTTGGTCAGAATCAACAATTTTTACCCCCTCTGGC  199

seq1  CTCGATGACATTCATCTTTCAGTATTT-CCTG-CCTGTGTAGTGTGTTT-  232
      ||||||||||||||||||||||||||| |||| |||||||||||||||| 
seq2  CTCGATGACATTCATCTTTCAGTATTTCCCTGCCCTGTGTAGTGTGTTTA  249

seq1  AACTGAACAGATGATTTGTTTTTAGCTGCCTCATTATAAAAATAAAAGAA  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAACAGATGATTTGTTTTTAGCTGCCTCATTATAAAAATAAAAGAA  299

seq1  GCCTGGCATCATCATCTTATACTTCGTTTTGCCATATATTAAAAATATTT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCATCATCATCTTATACTTCGTTTTGCCATATATTAAAAATATTT  349

seq1  CGTTTTTATTTTGAGATGATAAAATAATTACAAATTTTCCCTTTTTATTT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTTATTTTGAGATGATAAAATAATTACAAATTTTCCCTTTTTATTT  399

seq1  GTCCCACTAGAACAACCTATATACCCTTTGTGATCTCTCCCTCAAATCCC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACTAGAACAACCTATATACCCTTTGTGATCTCTCCCTCAAATCCC  449

seq1  AATTATTAAGGACAATTTTCATTTTATTGAATAAATAGTTGTAAATAATT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAAGGACAATTTTCATTTTATTGAATAAATAGTTGTAAATAATT  499

seq1  TCAGAAACAAGGATAAATAAAATATTTTCTAAAGTTTTATTTTATTAAAA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACAAGGATAAATAAAATATTTTCTAAAGTTTTATTTTATTAAAA  549

seq1  ATAGATCCATTTCTTTCCAAATACCTCCCAATTATGCTTTCACCTCCTTC  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCCATTTCTTTCCAAATACCTCCCAATTATGCTTTCACCTCCTTC  599

seq1  TATTGCACCAAGTTCTTCCCCACCTCCCCTCTCATCTGGACCTACCCCTG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCACCAAGTTCTTCCCCACCTCCCCTCTCATCTGGACCTACCCCTG  649

seq1  TCCAGAAACATTGAAGGAACATATTTCAAAAAGGTTAAAAATAAAACATA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAACATTGAAGGAACATATTTCAAAAAGGTTAAAAATAAAACATA  699

seq1  ACAAAATAAAATATAATATAATAAAACAAATACTATCCCATTAAATTTAT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAAAATATAATATAATAAAACAAATACTATCCCATTAAATTTAT  749

seq1  TCTGGATAAACCAACAGAAGGGAAAGTGCCCAAGAGTAGGAACAGTGTAC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATAAACCAACAGAAGGGAAAGTGCCCAAGAGTAGGAACAGTGTAC  799

seq1  TGGCTAGTTTTGTGTCCACTTGACACAGCTGGAGTTATCACAGAGAAAGG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGTTTTGTGTCCACTTGACACAGCTGGAGTTATCACAGAGAAAGG  849

seq1  AGCTTCAGTTGAGGAAATGTCTCCATGAGATCCAGCTGTAAGGCATTTTC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAGTTGAGGAAATGTCTCCATGAGATCCAGCTGTAAGGCATTTTC  899

seq1  TCAATTAGTGATCAAGGGGAAAAGGCCCCTTGTGGGTGGTGCCATCTCTG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAGTGATCAAGGGGAAAAGGCCCCTTGTGGGTGGTGCCATCTCTG  949

seq1  GGCTGATAGTCTTAGTTCTATAAGAGAGCAGGTTGAGCAAGGGGAGGCAA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATAGTCTTAGTTCTATAAGAGAGCAGGTTGAGCAAGGGGAGGCAA  999

seq1  GCCAGTAAGGAACATTCCTCCACGGCCACTGTA  1015
      |||||||||||||||||||||||||||||||||
seq2  GCCAGTAAGGAACATTCCTCCACGGCCACTGTA  1032