BAC Information

Click to search

BAC

Clone NameB6Ng01-236L14
Chromosome14 (Build37)
Map Location 53,547,102 - 53,548,289
singlet/doubletsinglet
Overlap genenone
Upstream geneE130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850
Downstream geneLOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236L14.bB6Ng01-236L14.g
ACCGA047872GA047873
length1,1851,176
definitionB6Ng01-236L14.b B6Ng01-236L14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagaggtgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggcattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccgt
ttaactctcctatctggccagtgcagaaaacagaatggatcatggagaat
gacagttgattatcgaaaactaaattaggtggtaactccaattgcagctg
ctgtaccagatgtagtttcgttacttgagcaaattaacacatctcctggc
acctggtatgcggctattgatctggcaaatgccttcttctcagtacctgt
ccataaggaccaccagaagcaatttgctttcagttggcaaggccaacagt
ataccttcacagttttgcctcaaggatatattaactctcctgccctgtgt
cataatttagttagaagggatcttgatcgtttggatcttccacaaaatat
cacattggtgcactatattgatgacattatgctgattggaccaagtgagc
aggaagtagcaaccactttggactcattggtaacacatatgcgtatcaga
ggatgggaaataaatccaaccaaaattcaaggaccatctacctcagtgaa
attcttaggagtccagtggtgtggggcatgcagagatatttctttctaag
gtgaaagataagttattgcacctggcccctcctacaaccaagaaagaagc
acaacgtttagtgggtctatttggattctggagacaacacatccctcact
tgggtgtgttacttaggcctatttacaagtgactcggaaaagctgctagc
tttttgtggggcctggaacaggagaaaggcccttcaacaggtccaggctt
gctgtgcaggctgctctacccacttggaccaatatgacccagcagacccg
atggtacttgagtgtctgtggctgaatagagaatgctgtttggagctctg
caagcccctgtaatgtgatccaaaaaaagaccttttgggatatttggagc
aaagcctctaacatctacttgccggacaatattcctccattgaaaaacag
gctcttggcctgccatattggggcctaattggtca
gaattcactgaaataggtggaacattgtcctcttgcaaccgaaagcctat
aagagacatgaaaaaaagccatttctcaggtgtcataactctcaagaaca
aacagagacctaaatatcatttccaagaaaaggaagagttgcttgataaa
tgataaaagtactctgtgatatgagagtggattagtaaatacagtactag
atagaagtaatgttacatatacacacattatatcggaatatatcacacat
acatttatatatgaaaacgtcacatatatacacttgcatgtgaaatatag
tgtatatgatgcattaggtttaaagctaagaaataacctcactagtgtgt
acaaataccattattgatctttcaatattagaacatatttgatatgacat
gttgctgtttcatgtgtctgagtcactcatagggtcagagagcacttaac
tagagtcctgactggctttgaatgcaaccacaaggtggtagtaaatctca
actgctaaggaatatgcggagagctcacttctgtgtatgctgatgattaa
ggcttggggcagaagcaaagcctttttctcagtggctgagtggacgactc
cagagctagaattgttactgagaaacaaccaccctctgataattataagt
caactgccagtcatcaagatctgggaagaacaatgaagacatgtgttgct
agtttatttacatttttctgtctatatctcattaatgagttaatattcta
gggccagagaatcatcagtgggcattcctgagacatctatgggaccactg
ttttactcaggatttctttagttactatagacaaagagaatcctggaagt
gatgatgccacagcctttctcttctctttccatctttctggatagggatg
agccaaggtcagcatgtgtaagagctttctttcatcctaagaggccagat
ggttccagtgccatcatcaactgcacttatgtagacagtgcctctctctg
cttcccttgctatagcagacttggaaagcatcctagcttcttccatggca
tttgtcagctatggaaagaaaagagacctgagatcttacttgacaagaaa
gctaaccatctcctacaatcataaccagcttgctgactagctatgactct
ggtccaaaagtgcacccttgctccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_53547102_53548289
seq2: B6Ng01-236L14.g_66_1241

seq1  GAATTCACTGAAATAGGTGGAACATTGTCCTCTTGCAACCGAAAGCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAATAGGTGGAACATTGTCCTCTTGCAACCGAAAGCCTAT  50

seq1  AAGAGACATGAAAAAAAGCCATTTCTCAGGTGTCATAACTCTCAAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACATGAAAAAAAGCCATTTCTCAGGTGTCATAACTCTCAAGAACA  100

seq1  AACAGAGACCTAAATATCATTTCCAAGAAAAGGAAGAGTTGCTTGATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGACCTAAATATCATTTCCAAGAAAAGGAAGAGTTGCTTGATAAA  150

seq1  TGATAAAAGTACTCTGTGATATGAGAGTGGATTAGTAAATACAGTACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAGTACTCTGTGATATGAGAGTGGATTAGTAAATACAGTACTAG  200

seq1  ATAGAAGTAATGTTACATATACACACATTATATCGGAATATATCACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTAATGTTACATATACACACATTATATCGGAATATATCACACAT  250

seq1  ACATTTATATATGAAAACGTCACATATATACACTTGCATGTGAAATATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATATATGAAAACGTCACATATATACACTTGCATGTGAAATATAG  300

seq1  TGTATATGATGCATTAGGTTTAAAGCTAAGAAATAACCTCACTAGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGATGCATTAGGTTTAAAGCTAAGAAATAACCTCACTAGTGTGT  350

seq1  ACAAATACCATTATTGATCTTTCAATATTAGAACATATTTGATATGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACCATTATTGATCTTTCAATATTAGAACATATTTGATATGACAT  400

seq1  GTTGCTGTTTCATGTGTCTGAGTCACTCATAGGGTCAGAGAGCACTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTTCATGTGTCTGAGTCACTCATAGGGTCAGAGAGCACTTAAC  450

seq1  TAGAGTCCTGACTGGCTTTGAATGCAACCACAAGGTGGTAGTAAATCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCCTGACTGGCTTTGAATGCAACCACAAGGTGGTAGTAAATCTCA  500

seq1  ACTGCTAAGGAATATGCGGAGAGCTCACTTCTGTGTATGCTGATGATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAAGGAATATGCGGAGAGCTCACTTCTGTGTATGCTGATGATTAA  550

seq1  GGCTTGGGGCAGAAGCAAAGCCTTTTTCTCAGTGGCTGAGTGGACGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGGGCAGAAGCAAAGCCTTTTTCTCAGTGGCTGAGTGGACGACTC  600

seq1  CAGAGCTAGAATTGTTACTGAGAAACAACCACCCTCTGATAATTATAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTAGAATTGTTACTGAGAAACAACCACCCTCTGATAATTATAAGT  650

seq1  CAACTGCCAGTCATCAAGATCTGGGAAGAACAATGAAGACATGTGTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCAGTCATCAAGATCTGGGAAGAACAATGAAGACATGTGTTGCT  700

seq1  AGTTTATTTACATTTTTCTGTCTATATCTCATTAATGAGTTAATATTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTTACATTTTTCTGTCTATATCTCATTAATGAGTTAATATTCTA  750

seq1  GGGCCAGAGAATCATCAGTGGGCATTCCTGAGACATCTATGGGACCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGAGAATCATCAGTGGGCATTCCTGAGACATCTATGGGACCACTG  800

seq1  TTTTACTCAGGATTTCTTTAGTTACTATAGACAAAGAGAATCCTGGAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCAGGATTTCTTTAGTTACTATAGACAAAGAGAATCCTGGAAGT  850

seq1  GATGATGCCACAGCCTTTCTCTTCTCTTTCCATCTTTCTGGATAGGGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGCCACAGCCTTTCTCTTCTCTTTCCATCTTTCTGGATAGGGATG  900

seq1  AGCCAAGGTCAGCATGTGTAAGAGCTTTCTTTCATCCTAAGAGGCCAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCCAAGGTCAGCATGTGTAAGAGCTTTCTTTCATCCTAAGAGGCCAGAT  950

seq1  GGGTCCAGTGCCATCATCAACTGCACTTATGTAGACAGTGCCTCTCTCTG  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAGTGCCATCATCAACTGCACTTATGTAGACAGTGCCTCTCTCTG  1000

seq1  CTTCCCTTGCTATAAGCAAGAACCTGGAAAGCATCCTAAGCTCTCCATTG  1050
      ||||||||||||| ||||   || ||||||||||||||   ||| |  ||
seq2  CTTCCCTTGCTAT-AGCA--GACTTGGAAAGCATCCTAGCTTCTTCCATG  1047

seq1  GCATTTGTTCAGCTATGGAAAGAAAAGAGACCCTGAGAATTCTACTGGAC  1100
      ||||||| |||||||||||||||||||||| |||||| ||  |||| |||
seq2  GCATTTG-TCAGCTATGGAAAGAAAAGAGA-CCTGAG-ATCTTACTTGAC  1094

seq1  AAGAAAGCTAAACCCTTCTCCCTACACATCATAAACAGCCTGCTGACTAA  1150
      |||||||||||  || ||| |||||| ||||||| |||| |||||||| |
seq2  AAGAAAGCTAA--CCATCT-CCTACA-ATCATAACCAGCTTGCTGACT-A  1139

seq1  GCTATGCACTTCTGTGCCACAAGTGCACCC-TGCTCCAC  1188
      |||||| || ||||  ||| |||||||||| ||||||||
seq2  GCTATG-AC-TCTGGTCCAAAAGTGCACCCTTGCTCCAC  1176