BAC Information

Click to search

BAC

Clone NameB6Ng01-237C13
Chromosome14 (Build37)
Map Location 60,474,914 - 60,633,823
singlet/doubletdoublet
Overlap geneAtp8a2
Upstream geneEG668177, EG668182, 1700129C05Rik, EG380907, Rcbtb1, EG628693, Phf11, EG236451, D14Ertd668e, EG628705, Setdb2, Cab39l, Cdadc1, Tmem46
Downstream geneLOC668162, LOC628768, Nupl1, Mtmr6, 2600011E07Rik, Ppia-ps14_696.1, EG628836, Spata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237C13.bB6Ng01-237C13.g
ACCGA048195GA048196
length1,221891
definitionB6Ng01-237C13.b B6Ng01-237C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,632,387 - 60,633,823)(60,474,914 - 60,475,802)
sequence
gaattcattctttttaatagctgagtagtactccatagtgtaagtgtacc
acattttttgtatccattcctctgttgaggggcacctgggttctttctat
ttagacattaatcatgataagtgccccttcccactgcccccatcttagaa
tttaagggtttcattaaggagagctcagttggcaactccattttcttctc
acagcaatgttaaccctctccagcctcctttgcctttagccttctagcgc
tgggtgctgggtgttcttacatcggcagctgcagacatgtgcaaggctca
gagaatgtggcaagggcgttggcttcattgtctcagctcaggttctgtga
ggtcaggtctccatctctgtctgagcaagaaactaatgtagccactgagc
agatgtggtcagtttattctctcaggaggcttggtctccaggaggccaca
ctcccaggattgtcctgaagctgtcacacccagacatttcttcaagacct
aggaatatttgtcagattctctggctttcccagggctttcatagtttatt
ctgaggagtgagtctgaacatacctctctctccttgcacactggacggtc
agtacgagggcagaggggcagcactggggagtggcgtgagcagagctgcc
ttccggtactagagcaaagtcctgttgtcttttgtcttgagactaccttt
gcctgatatcgagcatagatgcagctgggcatggtggctcaggcatataa
tgccagaaaacaatgctggaaaaactgaggtagtggaatcaccccaagtt
cgagaccagcatgagctacatagtgagtcccagcacagtctcaggaaaaa
aaacaaaatacttagtgttctagacatctttgttaaattgttcacaaatg
gcttgaaaggggcagtgtttttatatcatcaccgagggaatattttcctg
cctgatgcttacccgagagctgtgagcttggttctgtgggtgagaataag
ccatagggtggctgctgatggtggcagttcatgacgggcatgtgacaagt
gtgcctgttgtggagcctcctagacggtgtttaacaagctctcagaccat
tttggttctcttttcctcaattctctttcatatgttgcaatgtaatgtag
ccatgcatgtgtttatgctctttccatgccatggcatgtggtaagcgaag
ttgaaacctgttactctccag
gaattcaccagctgccaatagtttctgaaattgtgttatgtttggaattc
tgggaacttttcagaggctatataaatgctagagtcttgagagaagttgg
ccagttgttttgttggatgctgttggttggggtttgtcagaagtaatttg
atatcctagcagagatcaaacttgccccaaggaactggaactccctaatc
agcaggaagtagtctaccaatatcttcactcccctttccttctattcttt
tttctctcctacctaatgttagggggttaatagtgtggaagaaggaggct
gaaagaaagaacccacaaagtagtcaaaagtcaggccacacaatgtgaca
ttttaaacaatcctatcagtgtcctactagatgtccctctcatgtccacc
cctttgccacatatgtcctagtatccaagtatcccaggggtagtgaggat
atgttcagggaacagcagattctatgacaaatgcagcagggaattaggct
ctattcatgctggggtagggtggtagttgtggacacagcataggcacagg
ttgcccagaagtatcctagtggcacccagaaagttggccacctctgtttc
ctagcactgaccacacttgtctcattctgccctagcaagatgaaggagag
agtgacgcggcattctctgccaccacggacacagaagcagcaaggaagag
gagaacagcatcaggcctgggattggggatcttgggaggatagggaagaa
aggctgtacccggccatgtcacttattacaagcctcatggtacagccagc
taaaaaagaggctgcacaatacagatcctagtaggacccaacaggaagct
tttattttccatagcaaaccccttccttagtgtgggattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_60632387_60633823
seq2: B6Ng01-237C13.b_44_1264 (reverse)

seq1  CTGGAGAGATGGCTCGGTGAACAAAGTGCTCATAGTATAAAGCATGAGGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCGGAGGAGGATGGATCACCAGCATCCACATAAAAGCAGGACATAGTGGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATGTATCTATAACCCTGAGACCTGGAGAATGGGGACAGGCAGGTCATGGC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTCACTGGCCATCCAATCTAAACTGTGATTTCTTGACTCTGTGAGAGA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTGATGGCTATCTGTCTCAAAGGACTAAGCTGGAG-GTGACAGGTTTC  249
                                     |||||| || |||||||||
seq2  -------------------------------CTGGAGAGTAACAGGTTTC  19

seq1  TACTTCTGGCTT-CCACATGCACAT-GCATGG-AAGAGCAT--ACACATG  294
       |||||  |||| |||||||| ||| |||||| ||||||||  |||||||
seq2  AACTTC--GCTTACCACATGC-CATGGCATGGAAAGAGCATAAACACATG  66

seq1  CAT-GCTACA-TACA-TACAACATATGAAAGAGAATGAAGAAAAGGAGA-  340
      ||| |||||| |||| | ||||||||||||||||||  || ||| |||| 
seq2  CATGGCTACATTACATTGCAACATATGAAAGAGAATTGAGGAAAAGAGAA  116

seq1  -CAAAA-GGTCTGAGGAGCT--GTAAACACCG-CTA-GAAGCTCCAC-AC  383
       ||||| ||||||| |||||   ||||||||| ||| || ||||||| ||
seq2  CCAAAATGGTCTGA-GAGCTTGTTAAACACCGTCTAGGAGGCTCCACAAC  165

seq1  AGGCACAC-TGTCACCATG-CCGTCATGAACTGCCACCATCAGCAGCCAC  431
      |||||||| ||||| |||| ||||||||||||||||||||||||||||||
seq2  AGGCACACTTGTCA-CATGCCCGTCATGAACTGCCACCATCAGCAGCCAC  214

seq1  CCTATGGCTTA-TCTCACCCACAGAACCAAGCTCACAGCTCTCGGGTAAG  480
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGCTTATTCTCACCCACAGAACCAAGCTCACAGCTCTCGGGTAAG  264

seq1  CATCAGGCAGGAAAATATTCCCTCGGTGATGATATAAAAACACTGCCCCT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGCAGGAAAATATTCCCTCGGTGATGATATAAAAACACTGCCCCT  314

seq1  TTCAAGCCATTTGTGAACAATTTAACAAAGATGTCTAGAACACTAAGTAT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCCATTTGTGAACAATTTAACAAAGATGTCTAGAACACTAAGTAT  364

seq1  TTTGTTTTTTTTCCTGAGACTGTGCTGGGACTCACTATGTAGCTCATGCT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTCCTGAGACTGTGCTGGGACTCACTATGTAGCTCATGCT  414

seq1  GGTCTCGAACTTGGGGTGATTCCACTACCTCAGTTTTTCCAGCATTGTTT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCGAACTTGGGGTGATTCCACTACCTCAGTTTTTCCAGCATTGTTT  464

seq1  TCTGGCATTATATGCCTGAGCCACCATGCCCAGCTGCATCTATGCTCGAT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATTATATGCCTGAGCCACCATGCCCAGCTGCATCTATGCTCGAT  514

seq1  ATCAGGCAAAGGTAGTCTCAAGACAAAAGACAACAGGACTTTGCTCTAGT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCAAAGGTAGTCTCAAGACAAAAGACAACAGGACTTTGCTCTAGT  564

seq1  ACCGGAAGGCAGCTCTGCTCACGCCACTCCCCAGTGCTGCCCCTCTGCCC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGAAGGCAGCTCTGCTCACGCCACTCCCCAGTGCTGCCCCTCTGCCC  614

seq1  TCGTACTGACCGTCCAGTGTGCAAGGAGAGAGAGGTATGTTCAGACTCAC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTACTGACCGTCCAGTGTGCAAGGAGAGAGAGGTATGTTCAGACTCAC  664

seq1  TCCTCAGAATAAACTATGAAAGCCCTGGGAAAGCCAGAGAATCTGACAAA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAATAAACTATGAAAGCCCTGGGAAAGCCAGAGAATCTGACAAA  714

seq1  TATTCCTAGGTCTTGAAGAAATGTCTGGGTGTGACAGCTTCAGGACAATC  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTAGGTCTTGAAGAAATGTCTGGGTGTGACAGCTTCAGGACAATC  764

seq1  CTGGGAGTGTGGCCTCCTGGAGACCAAGCCTCCTGAGAGAATAAACTGAC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTGTGGCCTCCTGGAGACCAAGCCTCCTGAGAGAATAAACTGAC  814

seq1  CACATCTGCTCAGTGGCTACATTAGTTTCTTGCTCAGACAGAGATGGAGA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGCTCAGTGGCTACATTAGTTTCTTGCTCAGACAGAGATGGAGA  864

seq1  CCTGACCTCACAGAACCTGAGCTGAGACAATGAAGCCAACGCCCTTGCCA  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCTCACAGAACCTGAGCTGAGACAATGAAGCCAACGCCCTTGCCA  914

seq1  CATTCTCTGAGCCTTGCACATGTCTGCAGCTGCCGATGTAAGAACACCCA  1180
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTGAGCCTTGCACATGTCTGCAGCTGCCGATGTAAGAACACCCA  964

seq1  GCACCCAGCGCTAGAAGGCTAAAGGCAAAGGAGGCTGGAGAGGGTTAACA  1230
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAGCGCTAGAAGGCTAAAGGCAAAGGAGGCTGGAGAGGGTTAACA  1014

seq1  TTGCTGTGAGAAGAAAATGGAGTTGCCAACTGAGCTCTCCTTAATGAAAC  1280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGAGAAGAAAATGGAGTTGCCAACTGAGCTCTCCTTAATGAAAC  1064

seq1  CCTTAAATTCTAAGATGGGGGCAGTGGGAAGGGGCACTTATCATGATTAA  1330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATTCTAAGATGGGGGCAGTGGGAAGGGGCACTTATCATGATTAA  1114

seq1  TGTCTAAATAGAAAGAACCCAGGTGCCCCTCAACAGAGGAATGGATACAA  1380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAATAGAAAGAACCCAGGTGCCCCTCAACAGAGGAATGGATACAA  1164

seq1  AAAATGTGGTACACTTACACTATGGAGTACTACTCAGCTATTAAAAAGAA  1430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGGTACACTTACACTATGGAGTACTACTCAGCTATTAAAAAGAA  1214

seq1  TGAATTC  1437
      |||||||
seq2  TGAATTC  1221

seq1: chr14_60474914_60475802
seq2: B6Ng01-237C13.g_69_959

seq1  GAATTCACCAGCTGCCAATAGTTTCTGAAATTGTGTTATGTTTGGAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGCTGCCAATAGTTTCTGAAATTGTGTTATGTTTGGAATTC  50

seq1  TGGGAACTTTTCAGAGGCTATATAAATGCTAGAGTCTTGAGAGAAGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTTTTCAGAGGCTATATAAATGCTAGAGTCTTGAGAGAAGTTGG  100

seq1  CCAGTTGTTTTGTTGGATGCTGTTGGTTGGGGTTTGTCAGAAGTAATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGTTTTGTTGGATGCTGTTGGTTGGGGTTTGTCAGAAGTAATTTG  150

seq1  ATATCCTAGCAGAGATCAAACTTGCCCCAAGGAACTGGAACTCCCTAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTAGCAGAGATCAAACTTGCCCCAAGGAACTGGAACTCCCTAATC  200

seq1  AGCAGGAAGTAGTCTACCAATATCTTCACTCCCCTTTCCTTCTATTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAGTAGTCTACCAATATCTTCACTCCCCTTTCCTTCTATTCTTT  250

seq1  TTTCTCTCCTACCTAATGTTAGGGGGTTAATAGTGTGGAAGAAGGAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCTACCTAATGTTAGGGGGTTAATAGTGTGGAAGAAGGAGGCT  300

seq1  GAAAGAAAGAACCCACAAAGTAGTCAAAAGTCAGGCCACACAATGTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAACCCACAAAGTAGTCAAAAGTCAGGCCACACAATGTGACA  350

seq1  TTTTAAACAATCCTATCAGTGTCCTACTAGATGTCCCTCTCATGTCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACAATCCTATCAGTGTCCTACTAGATGTCCCTCTCATGTCCACC  400

seq1  CCTTTGCCACATATGTCCTAGTATCCAAGTATCCCAGGGGTAGTGAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCACATATGTCCTAGTATCCAAGTATCCCAGGGGTAGTGAGGAT  450

seq1  ATGTTCAGGGAACAGCAGATTCTATGACAAATGCAGCAGGGAATTAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGGGAACAGCAGATTCTATGACAAATGCAGCAGGGAATTAGGCT  500

seq1  CTATTCATGCTGGGGTAGGGTGGTAGTTGTGGACACAGCATAGGCACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATGCTGGGGTAGGGTGGTAGTTGTGGACACAGCATAGGCACAGG  550

seq1  TTGCCCAGAAGTATCCTAGTGGCACCCAGAAAGTTGGCCACCTCTGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAGAAGTATCCTAGTGGCACCCAGAAAGTTGGCCACCTCTGTTTC  600

seq1  CTAGCACTGACCACACTTGTCTCATTCTGCCCTAGCAAGATGAAGGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTGACCACACTTGTCTCATTCTGCCCTAGCAAGATGAAGGAGAG  650

seq1  AGTGACGCGGCATTCTCTGCCACCACGGACACAGAAGCAGCAAGGAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACGCGGCATTCTCTGCCACCACGGACACAGAAGCAGCAAGGAAGAG  700

seq1  GAGAACAGCATCAGGCCTGGGATTGGGGATCTTGGGAGGATAGGGAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGCATCAGGCCTGGGATTGGGGATCTTGGGAGGATAGGGAAGAA  750

seq1  AGGCTGTACCCGGCCATGTCACTTATTACAAGCCTCATGGTACAGCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTACCCGGCCATGTCACTTATTACAAGCCTCATGGTACAGCCAGC  800

seq1  T-AAAAAGAGGCTGCACAACACAGATCCTAGTAGGACCCAACA-GTAGCT  848
      | ||||||||||||||||| ||||||||||||||||||||||| | ||||
seq2  TAAAAAAGAGGCTGCACAATACAGATCCTAGTAGGACCCAACAGGAAGCT  850

seq1  TTAATTTTCCATTAGCAAAACCCTTCCTTAGGGT-GGATTCA  889
      || |||||||| ||||||| ||||||||||| || |||||||
seq2  TTTATTTTCCA-TAGCAAACCCCTTCCTTAGTGTGGGATTCA  891