BAC Information

Click to search

BAC

Clone NameB6Ng01-237J18
Chromosome14 (Build37)
Map Location 117,499,552 - 117,590,897
singlet/doubletdoublet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237J18.bB6Ng01-237J18.g
ACCGA048518GA048519
length1,2121,109
definitionB6Ng01-237J18.b B6Ng01-237J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,499,552 - 117,500,753)(117,589,791 - 117,590,897)
sequence
gaattctttcttctgaactatgatttaaaatgagtctgaatggttaaaca
ggcaatcatccaggaaatgtatgctattctttacttcaatgtatatagag
ccagaaatattctttcataacaaggatggaagagaaaaagaatcagataa
aactcagttgtcaatcaacataaggaagagtatcttttgctcagatttct
tacttatttccttcttccttctttacttttggcttctacggtgactattt
atttgatttttcaaatttggttacacaaattatatccagcttctaaaatt
agtagcctagtgtcaccttgctgtggtgaaggcttggctaccttgccttt
ccgttagtttggaatgcatatttataattttctcacagcccctttcagtc
agtaatgttcactgtgttatcagactgcccattctgcgtatcccagccca
cactctctccatctacttcttggttatggaaagtctacctggtacctggc
tgacttcatgtgtgagcacatcattgtttgacttcttgaggattcattca
gaaataccaccatcacaaattattttacagcgactctgggtaagaggtca
tcggtagcttctagaatcatcaattaaactagaataggcttctgcagcca
agtaggatttttacgacccattaaaaaccacattttgtacacatgaagaa
gtttcagaaatggctgttcatgggagtaattagatataacaggatgacta
caatccagtttttctatctccacaaatatatttttgatctaaccgagaat
gcaatttttttgctgaagtagaattttactaaaatatgatacttcctctt
gtcattttgtagatgtttattttctcttaaaacacctttatctaatgagt
gtttgtccagatgcatacattgccccagcttcaccttttagtctattgct
aatcaattttttgtttgtttgtttgttttggtttgattttcatacaatgt
ttctctattgtagtcttgggctgtccaagaacttgctttgtagcccaggc
tggccttgtgcctcaataaatgcaggtacttcttcttcccaaatcctcac
cccaccatcttctagctagtatcaaattggaataatagccattattttta
tttttcgggaaccaagactcactattatagccttggctgcctttgagaaa
cacacactatgt

gaattcctaccttcctgcctctatctccacactatggcatttcaagtgtg
catgatcataaccagacaaacctgcttttaatttccatttaatatttata
tctctttcaagatgaaatactacagcaatgaacacattttagttattact
agtcatttttctatataagccacacttgcctaagagttgtccatctgcag
agaaagcttttcaaatagaaattatacatgtatactctgccagacacgta
cattatgacccatatgatggaaaataaggaagagtctatcaccatatgga
ccccctttttattctttcatgtaggtgctttctctgagaaattagactat
attttaaagaagttattacattactgtcgtctatgtggtatataatgaga
aactattttaaaagtaagtatgagcaggcttgcactgtgataacactaca
cctctgcacataaataaggtctgctttcagtgaaatgggtattctaaggg
cgttaacacagtatacattctgcataagaagggaaattagtgttctgttt
ttagtttgctttttaaaaaatgtacttgtggccaaaattctgggcaaatg
tatatcattaaaatatataaattaagaattaggaagcaaagtccaataat
aagatcaagaagaaagttcaacaagatcaacaacaattaaaaaaccttca
tagaaagatcaaattgtaggtaaatttcatattgaataaatataaaggaa
agccatattcatttaagcatggaaataatctgtgttccacaggcaatctc
gagaaagggttcaacggcctaccccatgatagaatctacccggctacata
agctaaggagtatacacaactggcctccactgcatcaggaaagttggttt
tttattcttttaaactttggaacaacagtcaactgaatcttgtggctacc
ttttccatgtgggtagatgcttagtgtgcaattattgcaatcgttttgtt
aaggaagcatcagaaaggtttgtcagtgtatactttaaaacaaaataaac
taaatattgattgcctacaacaacggctatttttaagactgaatgtagta
ttcaggtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117499552_117500753
seq2: B6Ng01-237J18.b_46_1257

seq1  GAATTCTTTCTTCTGAACTATGATTTAAAATGAGTCTGAATGGTTAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTCTGAACTATGATTTAAAATGAGTCTGAATGGTTAAACA  50

seq1  GGCAATCATCCAGGAAATGTATGCTATTCTTTACTTCAATGTATATAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCATCCAGGAAATGTATGCTATTCTTTACTTCAATGTATATAGAG  100

seq1  CCAGAAATATTCTTTCATAACAAGGATGGAAGAGAAAAAGAATCAGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATATTCTTTCATAACAAGGATGGAAGAGAAAAAGAATCAGATAA  150

seq1  AACTCAGTTGTCAATCAACATAAGGAAGAGTATCTTTTGCTCAGATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTTGTCAATCAACATAAGGAAGAGTATCTTTTGCTCAGATTTCT  200

seq1  TACTTATTTCCTTCTTCCTTCTTTACTTTTGGCTTCTACGGTGACTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTTCCTTCTTCCTTCTTTACTTTTGGCTTCTACGGTGACTATTT  250

seq1  ATTTGATTTTTCAAATTTGGTTACACAAATTATATCCAGCTTCTAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTTTCAAATTTGGTTACACAAATTATATCCAGCTTCTAAAATT  300

seq1  AGTAGCCTAGTGTCACCTTGCTGTGGTGAAGGCTTGGCTACCTTGCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCTAGTGTCACCTTGCTGTGGTGAAGGCTTGGCTACCTTGCCTTT  350

seq1  CCGTTAGTTTGGAATGCATATTTATAATTTTCTCACAGCCCCTTTCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTAGTTTGGAATGCATATTTATAATTTTCTCACAGCCCCTTTCAGTC  400

seq1  AGTAATGTTCACTGTGTTATCAGACTGCCCATTCTGCGTATCCCAGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTTCACTGTGTTATCAGACTGCCCATTCTGCGTATCCCAGCCCA  450

seq1  CACTCTCTCCATCTACTTCTTGGTTATGGAAAGTCTACCTGGTACCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTCCATCTACTTCTTGGTTATGGAAAGTCTACCTGGTACCTGGC  500

seq1  TGACTTCATGTGTGAGCACATCATTGTTTGACTTCTTGAGGATTCATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCATGTGTGAGCACATCATTGTTTGACTTCTTGAGGATTCATTCA  550

seq1  GAAATACCACCATCACAAATTATTTTACAGCGACTCTGGGTAAGAGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACCACCATCACAAATTATTTTACAGCGACTCTGGGTAAGAGGTCA  600

seq1  TCGGTAGCTTCTAGAATCATCAATTAAACTAGAATAGGCTTCTGCAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTAGCTTCTAGAATCATCAATTAAACTAGAATAGGCTTCTGCAGCCA  650

seq1  AGTAGGATTTTTACGACCCATTAAAAACCACATTTTGTACACATGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGATTTTTACGACCCATTAAAAACCACATTTTGTACACATGAAGAA  700

seq1  GTTTCAGAAATGGCTGTTCATGGGAGTAATTAGATATAACAGGATGACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAAATGGCTGTTCATGGGAGTAATTAGATATAACAGGATGACTA  750

seq1  CAATCCAGTTTTTCTATCTCCACAAATATATTTTTGATCTAACCGAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAGTTTTTCTATCTCCACAAATATATTTTTGATCTAACCGAGAAT  800

seq1  GCAATTTTTTTGCTGAAGTAGAATTTTACTAAAATATGATACTTCCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTTTTGCTGAAGTAGAATTTTACTAAAATATGATACTTCCTCTT  850

seq1  GTCATTTTGTAGATGTTTATTTTCTCTTAAAACACCTTTATCTAATGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTGTAGATGTTTATTTTCTCTTAAAACACCTTTATCTAATGAGT  900

seq1  GTTTGTCCAGATGCATACATTGCCCCAGCTTCACCTTTTAGTCTATTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCCAGATGCATACATTGCCCCAGCTTCACCTTTTAGTCTATTGCT  950

seq1  AATCAATTTTTTGTTTGTTTGTTTGTTTTGGTTTGATTTTCAATACAATG  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATCAATTTTTTGTTTGTTTGTTTGTTTTGGTTTGATTTTC-ATACAATG  999

seq1  TTTCTCTA-TGTAGTCTT-GGCTGTCCAAGAACTTGCTTTGTAGCCCAGG  1048
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  TTTCTCTATTGTAGTCTTGGGCTGTCCAAGAACTTGCTTTGTAGCCCAGG  1049

seq1  CTGGCCTTGTG-CTCAATAAATGCAGGTACTTCTTCTTCCCAAAATCTCA  1097
      ||||||||||| ||||||||||||||||||||||||||||||||  ||||
seq2  CTGGCCTTGTGCCTCAATAAATGCAGGTACTTCTTCTTCCCAAATCCTCA  1099

seq1  -CCCACCATCTCCTAGCTAGTAATCAATTTG--ATAATAGCCATTATTTT  1144
       |||||||||| ||||||||| ||||| |||  |||||||||||||||||
seq2  CCCCACCATCTTCTAGCTAGT-ATCAAATTGGAATAATAGCCATTATTTT  1148

seq1  TATTTTTTCTGGACAAAGACTCACTA-TATAGCCCTGGCTGC--TTGAGA  1191
      |||||||   | || ||||||||||| ||||||| |||||||  ||||||
seq2  TATTTTTCGGGAACCAAGACTCACTATTATAGCCTTGGCTGCCTTTGAGA  1198

seq1  ---ACACACTATGT  1202
         |||||||||||
seq2  AACACACACTATGT  1212


seq1: chr14_117589791_117590897
seq2: B6Ng01-237J18.g_62_1170 (reverse)

seq1  TAACCTGATACCTACA-TCAGTCTTAAAAATAGCCG-TGTTGTAGGCAAT  48
      ||||||||   ||||| ||||||||||||||||||| |||||||||||||
seq2  TAACCTGAATACTACATTCAGTCTTAAAAATAGCCGTTGTTGTAGGCAAT  50

seq1  CAATATTTAGTTTA-TTTGTTTT-AAGTATACACTGACAAACCTTTCCTG  96
      |||||||||||||| |||||||| |||||||||||||||||||||| |||
seq2  CAATATTTAGTTTATTTTGTTTTAAAGTATACACTGACAAACCTTT-CTG  99

seq1  ATGCTTCCTTAACAAAAACGATTGCAATAATTGCACACTAAGCATCTACC  146
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCTTAAC-AAAACGATTGCAATAATTGCACACTAAGCATCTACC  148

seq1  CACATGGAAAAGGTAGCCACAAGATTCAGTTGACTGTTGTTCCAAAGTTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGAAAAGGTAGCCACAAGATTCAGTTGACTGTTGTTCCAAAGTTT  198

seq1  AAAAGAATAAAAAACCAACTTTCCTGATGCAGTGGAGGCCAGTTGTGTAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATAAAAAACCAACTTTCCTGATGCAGTGGAGGCCAGTTGTGTAT  248

seq1  ACTCCTTAGCTTATGTAGCCGGGTAGATTCTATCATGGGGTAGGCCGTTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTAGCTTATGTAGCCGGGTAGATTCTATCATGGGGTAGGCCGTTG  298

seq1  AACCCTTTCTCGAGATTGCCTGTGGAACACAGATTATTTCCATGCTTAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTCTCGAGATTGCCTGTGGAACACAGATTATTTCCATGCTTAAA  348

seq1  TGAATATGGCTTTCCTTTATATTTATTCAATATGAAATTTACCTACAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGGCTTTCCTTTATATTTATTCAATATGAAATTTACCTACAATT  398

seq1  TGATCTTTCTATGAAGGTTTTTTAATTGTTGTTGATCTTGTTGAACTTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTCTATGAAGGTTTTTTAATTGTTGTTGATCTTGTTGAACTTTC  448

seq1  TTCTTGATCTTATTATTGGACTTTGCTTCCTAATTCTTAATTTATATATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATCTTATTATTGGACTTTGCTTCCTAATTCTTAATTTATATATT  498

seq1  TTAATGATATACATTTGCCCAGAATTTTGGCCACAAGTACATTTTTTAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATATACATTTGCCCAGAATTTTGGCCACAAGTACATTTTTTAAA  548

seq1  AAGCAAACTAAAAACAGAACACTAATTTCCCTTCTTATGCAGAATGTATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACTAAAAACAGAACACTAATTTCCCTTCTTATGCAGAATGTATA  598

seq1  CTGTGTTAACGCCCTTAGAATACCCATTTCACTGAAAGCAGACCTTATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTAACGCCCTTAGAATACCCATTTCACTGAAAGCAGACCTTATTT  648

seq1  ATGTGCAGAGGTGTAGTGTTATCACAGTGCAAGCCTGCTCATACTTACTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGAGGTGTAGTGTTATCACAGTGCAAGCCTGCTCATACTTACTT  698

seq1  TTAAAATAGTTTCTCATTATATACCACATAGACGACAGTAATGTAATAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAGTTTCTCATTATATACCACATAGACGACAGTAATGTAATAAC  748

seq1  TTCTTTAAAATATAGTCTAATTTCTCAGAGAAAGCACCTACATGAAAGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAAATATAGTCTAATTTCTCAGAGAAAGCACCTACATGAAAGAA  798

seq1  TAAAAAGGGGGTCCATATGGTGATAGACTCTTCCTTATTTTCCATCATAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGGGGTCCATATGGTGATAGACTCTTCCTTATTTTCCATCATAT  848

seq1  GGGTCATAATGTACGTGTCTGGCAGAGTATACATGTATAATTTCTATTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATAATGTACGTGTCTGGCAGAGTATACATGTATAATTTCTATTTG  898

seq1  AAAAGCTTTCTCTGCAGATGGACAACTCTTAGGCAAGTGTGGCTTATATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTTCTCTGCAGATGGACAACTCTTAGGCAAGTGTGGCTTATATA  948

seq1  GAAAAATGACTAGTAATAACTAAAATGTGTTCATTGCTGTAGTATTTCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGACTAGTAATAACTAAAATGTGTTCATTGCTGTAGTATTTCAT  998

seq1  CTTGAAAGAGATATAAATATTAAATGGAAATTAAAAGCAGGTTTGTCTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGAGATATAAATATTAAATGGAAATTAAAAGCAGGTTTGTCTGG  1048

seq1  TTATGATCATGCACACTTGAAATGCCATAGTGTGGAGATAGAGGCAGGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATCATGCACACTTGAAATGCCATAGTGTGGAGATAGAGGCAGGAA  1098

seq1  GGTAGGAATTC  1107
      |||||||||||
seq2  GGTAGGAATTC  1109


| Home | SequenceCutter | Blast | Download |