BAC Information

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BAC

Clone NameB6Ng01-239D04
Chromosome14 (Build37)
Map Location 47,560,457 - 47,713,144
singlet/doubletdoublet
Overlap geneSamd4
Upstream geneLOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1
Downstream geneGch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239D04.bB6Ng01-239D04.g
ACCGA049688GA049689
length804544
definitionB6Ng01-239D04.b B6Ng01-239D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,712,341 - 47,713,144)(47,560,457 - 47,561,006)
sequence
gaattccaagtcttggtgaagcccatatgttcacgccgcagagaacctta
acagtgtgactttttaattgtgtgcttgatgaaaacagaccaatgacgtc
ttgccgcacacatcaggcggagaggctgatcagatagatgggggcttctg
tctcaagctaacacccttcagtcatttgctgcttagtggggtagaaccct
ccgtaaatttagctccaggacaatcaggctgtgctgcgggctggtagata
cacgttagcatgtaggtctcaggcatcatagggctacaagcgctgagtaa
gacaataggaaggactggcttgaacccactcactgttgtctccaggaagt
ctgtttcttccctggaaccgccgctcggagctgttggaaaaggcccaaat
ctggaacctttccttgtggacacgatgctaccaatactttggatttggat
gcatttcagacattcagattggtgtggagtttatgcaaatattctggaat
ttgaaaaaccctgacatttgaaacacatccagtcctaaacaccctgaata
atgaatattaaacctgtaacaggaatttttttttgtatcattagattatt
ctagggtttggtgaggattctgaagggttaaggtggactcaaaactgaaa
aagaaaaaattatttaaaaattttatgtaatgtgtatgtctgagtgagta
tatgccgcatgtgtacatgtgcccatggaggccaagcaagagcatagatc
ccttggtgctggtgatggtggggccacctgatggtggtggtgatggtggt
ggtg
caagcaactgtttttctctttacaaatcagaaaacgctcaccattttagt
tctgcagcgccttttacctcctggtccccacgccggggttaattttactc
ctttatatttttcctggcttagtctttgaagaaatatcataggaaaagag
aaaggggcagaaagtagagaatcaggccaaggaatgtctgagggtttttg
gctttttttttccttctttttcttttttgagacagggtttctttgtgtag
ccctggctgccctggatctcgctttgtagaccaggctggcctggaacttg
tgtagatcctcctgcctctctccagcccactggtcaggttctataccttc
cgactgtctggacacagtgttagcctgtggtttgcatttgcttgactgtg
gtgtggatgtatattccttagagttcctctaggacgtccacaggagcaga
gtcccagctgggttttgtgttagtggtactgttcctgcacaggtgggtgg
agcctcctctgcaatacaaggttgtgggggtagagtgggggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_47712341_47713144
seq2: B6Ng01-239D04.b_48_851 (reverse)

seq1  CACCACCACCATCACCACCACCATCAGGTGGCCCCACCATCACCAGCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACCATCACCACCACCATCAGGTGGCCCCACCATCACCAGCACC  50

seq1  AAGGGATCTATGCTCTTGCTTGGCCTCCATGGGCACATGTACACATGCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATCTATGCTCTTGCTTGGCCTCCATGGGCACATGTACACATGCGG  100

seq1  CATATACTCACTCAGACATACACATTACATAAAATTTTTAAATAATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTCACTCAGACATACACATTACATAAAATTTTTAAATAATTTTT  150

seq1  TCTTTTTCAGTTTTGAGTCCACCTTAACCCTTCAGAATCCTCACCAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCAGTTTTGAGTCCACCTTAACCCTTCAGAATCCTCACCAAACC  200

seq1  CTAGAATAATCTAATGATACAAAAAAAAATTCCTGTTACAGGTTTAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATAATCTAATGATACAAAAAAAAATTCCTGTTACAGGTTTAATAT  250

seq1  TCATTATTCAGGGTGTTTAGGACTGGATGTGTTTCAAATGTCAGGGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTCAGGGTGTTTAGGACTGGATGTGTTTCAAATGTCAGGGTTTT  300

seq1  TCAAATTCCAGAATATTTGCATAAACTCCACACCAATCTGAATGTCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCCAGAATATTTGCATAAACTCCACACCAATCTGAATGTCTGAA  350

seq1  ATGCATCCAAATCCAAAGTATTGGTAGCATCGTGTCCACAAGGAAAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCCAAATCCAAAGTATTGGTAGCATCGTGTCCACAAGGAAAGGTT  400

seq1  CCAGATTTGGGCCTTTTCCAACAGCTCCGAGCGGCGGTTCCAGGGAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTTGGGCCTTTTCCAACAGCTCCGAGCGGCGGTTCCAGGGAAGAA  450

seq1  ACAGACTTCCTGGAGACAACAGTGAGTGGGTTCAAGCCAGTCCTTCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTTCCTGGAGACAACAGTGAGTGGGTTCAAGCCAGTCCTTCCTAT  500

seq1  TGTCTTACTCAGCGCTTGTAGCCCTATGATGCCTGAGACCTACATGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTACTCAGCGCTTGTAGCCCTATGATGCCTGAGACCTACATGCTAA  550

seq1  CGTGTATCTACCAGCCCGCAGCACAGCCTGATTGTCCTGGAGCTAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTATCTACCAGCCCGCAGCACAGCCTGATTGTCCTGGAGCTAAATTT  600

seq1  ACGGAGGGTTCTACCCCACTAAGCAGCAAATGACTGAAGGGTGTTAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGGGTTCTACCCCACTAAGCAGCAAATGACTGAAGGGTGTTAGCTT  650

seq1  GAGACAGAAGCCCCCATCTATCTGATCAGCCTCTCCGCCTGATGTGTGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAAGCCCCCATCTATCTGATCAGCCTCTCCGCCTGATGTGTGCG  700

seq1  GCAAGACGTCATTGGTCTGTTTTCATCAAGCACACAATTAAAAAGTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACGTCATTGGTCTGTTTTCATCAAGCACACAATTAAAAAGTCACA  750

seq1  CTGTTAAGGTTCTCTGCGGCGTGAACATATGGGCTTCACCAAGACTTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAGGTTCTCTGCGGCGTGAACATATGGGCTTCACCAAGACTTGGA  800

seq1  ATTC  804
      ||||
seq2  ATTC  804

seq1: chr14_47560457_47561006
seq2: B6Ng01-239D04.g_68_617

seq1  GAATTCCAAGCAACTGTTTTTCTCTTTACAAATCAGAAAACGCTCACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCAACTGTTTTTCTCTTTACAAATCAGAAAACGCTCACCAT  50

seq1  TTTAGTTCTGCAGCGCCTTTTACCTCCTGGTCCCCACGCCGGGGTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCTGCAGCGCCTTTTACCTCCTGGTCCCCACGCCGGGGTTAATT  100

seq1  TTACTCCTTTATATTTTTCCTGGCTTAGTCTTTGAAGAAATATCATAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCTTTATATTTTTCCTGGCTTAGTCTTTGAAGAAATATCATAGGA  150

seq1  AAAGAGAAAGGGGCAGAAAGTAGAGAATCAGGCCAAGGAATGTCTGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAAGGGGCAGAAAGTAGAGAATCAGGCCAAGGAATGTCTGAGGG  200

seq1  TTTTTGGCTTTTTTTTTCCTTCTTTTTCTTTTTTGAGACAGGGTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGCTTTTTTTTTCCTTCTTTTTCTTTTTTGAGACAGGGTTTCTTT  250

seq1  GTGTAGCCCTGGCTGCCCTGGATCTCGCTTTGTAGACCAGGCTGGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCCCTGGCTGCCCTGGATCTCGCTTTGTAGACCAGGCTGGCCTGG  300

seq1  AACTTGTGTAGATCCTCCTGCCTCTCTCCAGCCCACTGGTCAGGTTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTGTAGATCCTCCTGCCTCTCTCCAGCCCACTGGTCAGGTTCTAT  350

seq1  ACCTTCCGACTGTCTGGACACAGTGTTAGCCTGTGGTTTGCATTTGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCGACTGTCTGGACACAGTGTTAGCCTGTGGTTTGCATTTGCTTG  400

seq1  ACTGTGGTGTGGATGTATATTCCTTAGAGTTCCTCTAGGACGTCCACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTGTGGATGTATATTCCTTAGAGTTCCTCTAGGACGTCCACAGG  450

seq1  AGCAGAGTCCCAGCTGGGTTTTGTGTTAGTGGTACTGTTCCTGCACAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGTCCCAGCTGGGTTTTGTGTTAGTGGTACTGTTCCTGCACAGGT  500

seq1  GGGTGGAGCCTCCTCTGCAATACAAGGTTGTGGGGGTAGAGTGGGGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAGCCTCCTCTGCAATACAAGGTTGTGGGGGTAGAGTGGGGGTTG  550